Wall clock time and date at job start Tue Mar 31 2020 11:52:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38257 * 120.00493 * 2 1
4 4 C 1.38214 * 120.07593 * 180.02562 * 3 2 1
5 5 C 1.38252 * 120.06444 * 0.02562 * 4 3 2
6 6 C 1.50707 * 119.99533 * 179.97438 * 5 4 3
7 7 N 1.46495 * 109.47212 * 100.32257 * 6 5 4
8 8 C 1.36935 * 120.00025 * 275.47394 * 7 6 5
9 9 H 1.08002 * 120.00536 * 141.72212 * 8 7 6
10 10 C 1.38812 * 119.99799 * 321.71539 * 8 7 6
11 11 N 1.31618 * 119.99805 * 158.69709 * 10 8 7
12 12 Si 1.86798 * 120.00289 * 338.70190 * 10 8 7
13 13 H 1.48495 * 109.47144 * 95.20075 * 12 10 8
14 14 H 1.48494 * 109.47318 * 215.20590 * 12 10 8
15 15 H 1.48505 * 109.46889 * 335.20132 * 12 10 8
16 16 C 1.46499 * 120.00195 * 95.46988 * 7 6 5
17 17 C 1.50707 * 109.47117 * 90.00167 * 16 7 6
18 18 C 1.38233 * 119.99779 * 269.72931 * 17 16 7
19 19 C 1.38233 * 119.99918 * 180.32484 * 18 17 16
20 20 C 1.38233 * 119.99903 * 359.94462 * 19 18 17
21 21 C 1.38232 * 120.00002 * 0.03060 * 20 19 18
22 22 C 1.38230 * 120.00234 * 359.97438 * 21 20 19
23 23 C 1.38369 * 120.00456 * 0.25561 * 5 4 3
24 24 F 1.35100 * 120.03301 * 179.69983 * 23 5 4
25 25 C 1.38372 * 119.99958 * 180.02562 * 2 1 3
26 26 F 1.35105 * 120.03287 * 0.02562 * 25 2 1
27 27 H 1.09004 * 109.47167 * 89.99697 * 1 2 3
28 28 H 1.09001 * 109.47379 * 209.99995 * 1 2 3
29 29 H 1.08999 * 109.46983 * 330.00101 * 1 2 3
30 30 H 1.08003 * 119.95968 * 0.03786 * 3 2 1
31 31 H 1.07997 * 119.96715 * 180.02562 * 4 3 2
32 32 H 1.08993 * 109.47166 * 340.32214 * 6 5 4
33 33 H 1.09000 * 109.47159 * 220.32241 * 6 5 4
34 34 H 0.96997 * 120.00195 * 180.02562 * 11 10 8
35 35 H 1.08996 * 109.47206 * 330.00463 * 16 7 6
36 36 H 1.09000 * 109.47651 * 210.00112 * 16 7 6
37 37 H 1.08007 * 120.00364 * 0.26742 * 18 17 16
38 38 H 1.08007 * 120.00072 * 179.97438 * 19 18 17
39 39 H 1.07997 * 119.99765 * 180.02562 * 20 19 18
40 40 H 1.08007 * 119.99754 * 179.97438 * 21 20 19
41 41 H 1.08000 * 119.99978 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1984 1.1973 0.0000
4 6 3.5805 1.1990 -0.0005
5 6 4.2746 0.0033 -0.0016
6 6 5.7817 0.0070 -0.0028
7 7 6.2716 -0.2399 1.3555
8 6 6.3914 0.7990 2.2396
9 1 6.1417 0.6540 3.2803
10 6 6.8338 2.0384 1.7982
11 7 6.5643 3.1206 2.4973
12 14 7.8115 2.1707 0.2120
13 1 6.8944 2.4992 -0.9088
14 1 8.8315 3.2413 0.3470
15 1 8.4857 0.8765 -0.0632
16 6 6.6335 -1.5982 1.7682
17 6 8.0902 -1.8428 1.4692
18 6 8.4662 -2.3681 0.2471
19 6 9.8018 -2.5987 -0.0247
20 6 10.7615 -2.3029 0.9252
21 6 10.3855 -1.7771 2.1471
22 6 9.0499 -1.5466 2.4189
23 6 3.5857 -1.1967 -0.0075
24 9 4.2634 -2.3654 -0.0147
25 6 2.1988 -1.1983 -0.0005
26 9 1.5240 -2.3688 -0.0016
27 1 -0.3634 0.0001 -1.0277
28 1 -0.3634 -0.8900 0.5138
29 1 -0.3633 0.8900 0.5138
30 1 1.6578 2.1323 0.0006
31 1 4.1188 2.1352 -0.0001
32 1 6.1423 0.9756 -0.3486
33 1 6.1464 -0.7753 -0.6684
34 1 6.8731 3.9867 2.1887
35 1 6.0246 -2.3183 1.2216
36 1 6.4581 -1.7119 2.8379
37 1 7.7164 -2.5992 -0.4952
38 1 10.0955 -3.0095 -0.9794
39 1 11.8050 -2.4827 0.7127
40 1 11.1353 -1.5465 2.8895
41 1 8.7562 -1.1362 3.3738
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001137970070.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:52:38
Heat of formation + Delta-G solvation = -31.034029 kcal
Electronic energy + Delta-G solvation = -26696.717523 eV
Core-core repulsion = 22791.531456 eV
Total energy + Delta-G solvation = -3905.186067 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.129 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-50.46591 -49.55523 -40.37457 -39.92428 -37.64661 -34.21824 -33.95029 -32.02665
-31.69094 -31.23869 -29.49918 -27.56516 -26.19339 -23.98939 -23.61409 -23.32795
-22.53106 -21.59616 -19.15536 -18.67872 -18.12123 -17.71307 -17.50244 -17.40656
-17.05802 -16.30200 -16.09630 -15.86326 -15.76285 -15.55305 -15.43969 -14.88036
-14.59251 -14.48102 -14.24469 -14.19460 -14.04926 -13.86739 -13.58714 -13.29276
-13.00672 -12.81919 -12.72212 -12.61065 -12.25175 -12.13125 -12.04879 -12.00009
-11.70291 -11.54219 -10.70051 -9.73015 -9.69336 -9.65286 -9.52864 -8.88805
-8.21595 -5.61301 0.00186 0.03421 0.56603 0.59770 1.22784 1.39108
1.50916 2.35527 2.39512 2.81539 2.92973 3.07928 3.36865 3.53882
3.63129 3.74691 4.00903 4.02899 4.06680 4.13382 4.24527 4.31533
4.34569 4.48938 4.52195 4.65659 4.72272 4.75848 4.79267 4.85475
4.93156 5.00538 5.06345 5.19906 5.23139 5.25538 5.30340 5.43558
5.64659 5.67598 5.82089 5.86301 5.96356 6.15239 6.23808 6.88769
7.54371 7.98301 8.97173
Molecular weight = 317.13amu
Principal moments of inertia in cm(-1)
A = 0.014060 B = 0.005296 C = 0.004241
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1990.939740 B = 5286.184281 C = 6600.836545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 C -0.097 4.097
3 C -0.093 4.093
4 C -0.089 4.089
5 C -0.108 4.108
6 C 0.172 3.828
7 N -0.592 5.592
8 C -0.248 4.248
9 H 0.044 0.956
10 C 0.005 3.995
11 N -0.935 5.935
12 Si 0.918 3.082
13 H -0.267 1.267
14 H -0.312 1.312
15 H -0.263 1.263
16 C 0.176 3.824
17 C -0.101 4.101
18 C -0.130 4.130
19 C -0.128 4.128
20 C -0.135 4.135
21 C -0.132 4.132
22 C -0.121 4.121
23 C 0.061 3.939
24 F -0.136 7.136
25 C 0.045 3.955
26 F -0.136 7.136
27 H 0.093 0.907
28 H 0.068 0.932
29 H 0.095 0.905
30 H 0.169 0.831
31 H 0.125 0.875
32 H 0.050 0.950
33 H 0.070 0.930
34 H 0.264 0.736
35 H 0.070 0.930
36 H 0.050 0.950
37 H 0.121 0.879
38 H 0.144 0.856
39 H 0.146 0.854
40 H 0.136 0.864
41 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.864 -7.933 -7.919 12.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.098 4.098
3 C -0.111 4.111
4 C -0.108 4.108
5 C -0.111 4.111
6 C 0.047 3.953
7 N -0.312 5.312
8 C -0.377 4.377
9 H 0.062 0.938
10 C -0.193 4.193
11 N -0.578 5.578
12 Si 0.748 3.252
13 H -0.194 1.194
14 H -0.241 1.241
15 H -0.188 1.188
16 C 0.051 3.949
17 C -0.103 4.103
18 C -0.149 4.149
19 C -0.146 4.146
20 C -0.153 4.153
21 C -0.150 4.150
22 C -0.140 4.140
23 C 0.041 3.959
24 F -0.115 7.115
25 C 0.025 3.975
26 F -0.114 7.114
27 H 0.111 0.889
28 H 0.087 0.913
29 H 0.114 0.886
30 H 0.186 0.814
31 H 0.143 0.857
32 H 0.068 0.932
33 H 0.088 0.912
34 H 0.073 0.927
35 H 0.088 0.912
36 H 0.069 0.931
37 H 0.139 0.861
38 H 0.161 0.839
39 H 0.164 0.836
40 H 0.154 0.846
41 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -4.848 -7.876 -7.872 12.145
hybrid contribution 0.847 0.124 -0.205 0.881
sum -4.001 -7.752 -8.077 11.888
Atomic orbital electron populations
1.20806 0.86972 1.04430 1.04211 1.20127 0.98867 0.90055 1.00750
1.21271 0.92906 0.98511 0.98378 1.21129 0.95043 0.97064 0.97533
1.20723 0.98819 0.91602 0.99998 1.20130 0.87580 1.00126 0.87419
1.44141 1.72473 1.04236 1.10365 1.18523 1.38324 0.89208 0.91684
0.93806 1.25788 0.98234 0.95381 0.99859 1.69944 1.47245 0.98421
1.42204 0.86252 0.79807 0.77236 0.81912 1.19397 1.24080 1.18789
1.20150 0.89828 0.85861 0.99014 1.20854 0.97907 0.96815 0.94742
1.21194 0.97093 1.00309 0.96288 1.21410 0.92590 1.00385 1.00234
1.21401 1.00457 0.99870 0.93558 1.21405 0.95656 0.99641 0.98283
1.21152 0.93763 0.99532 0.99582 1.17559 0.88512 0.81862 1.07989
1.91405 1.80000 1.45877 1.94192 1.17605 0.87721 0.82725 1.09412
1.91450 1.79738 1.45848 1.94397 0.88870 0.91278 0.88638 0.81396
0.85743 0.93245 0.91167 0.92671 0.91187 0.93124 0.86108 0.83853
0.83591 0.84643 0.87456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.97 9.83 71.23 0.70 -1.27 16
2 C -0.10 -2.58 5.88 -19.83 -0.12 -2.70 16
3 C -0.09 -2.56 9.70 22.27 0.22 -2.34 16
4 C -0.09 -3.13 9.67 22.27 0.22 -2.92 16
5 C -0.11 -4.15 5.43 -19.83 -0.11 -4.25 16
6 C 0.17 7.26 4.53 85.64 0.39 7.65 16
7 N -0.59 -27.32 2.05 -710.69 -1.46 -28.77 16
8 C -0.25 -13.44 9.88 84.03 0.83 -12.61 16
9 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16
10 C 0.01 0.30 5.34 84.86 0.45 0.75 16
11 N -0.94 -55.29 13.97 21.65 0.30 -54.99 16
12 Si 0.92 44.70 25.00 68.60 1.72 46.41 16
13 H -0.27 -12.07 6.69 99.48 0.67 -11.40 16
14 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16
15 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16
16 C 0.18 7.23 5.77 85.64 0.49 7.72 16
17 C -0.10 -3.89 5.46 -19.86 -0.11 -4.00 16
18 C -0.13 -4.44 9.70 22.27 0.22 -4.22 16
19 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16
20 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16
21 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16
22 C -0.12 -4.61 9.70 22.27 0.22 -4.39 16
23 C 0.06 2.23 7.25 22.41 0.16 2.39 16
24 F -0.14 -5.01 14.49 44.97 0.65 -4.36 16
25 C 0.05 1.46 7.25 22.41 0.16 1.62 16
26 F -0.14 -4.26 16.39 44.97 0.74 -3.52 16
27 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16
28 H 0.07 1.29 7.64 -2.39 -0.02 1.27 16
29 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16
30 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16
31 H 0.12 4.70 8.03 -2.91 -0.02 4.67 16
32 H 0.05 2.22 2.90 -2.39 -0.01 2.21 16
33 H 0.07 2.72 7.83 -2.39 -0.02 2.70 16
34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16
35 H 0.07 2.69 5.82 -2.39 -0.01 2.67 16
36 H 0.05 2.14 7.98 -2.39 -0.02 2.12 16
37 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16
38 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16
39 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16
40 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16
41 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16
Total: -1.00 -64.43 349.49 7.35 -57.08
By element:
Atomic # 1 Polarization: 16.81 SS G_CDS: 1.01 Total: 17.81 kcal
Atomic # 6 Polarization: -34.07 SS G_CDS: 4.39 Total: -29.67 kcal
Atomic # 7 Polarization: -82.61 SS G_CDS: -1.15 Total: -83.76 kcal
Atomic # 9 Polarization: -9.26 SS G_CDS: 1.39 Total: -7.87 kcal
Atomic # 14 Polarization: 44.70 SS G_CDS: 1.72 Total: 46.41 kcal
Total: -64.43 7.35 -57.08 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001137970070.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.050 kcal
(2) G-P(sol) polarization free energy of solvation -64.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.084 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds