Wall clock time and date at job start Tue Mar 31 2020 11:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 120.00493 * 2 1 4 4 C 1.38214 * 120.07593 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.06444 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99533 * 179.97438 * 5 4 3 7 7 N 1.46495 * 109.47212 * 100.32257 * 6 5 4 8 8 C 1.36935 * 120.00025 * 275.47394 * 7 6 5 9 9 H 1.08002 * 120.00536 * 141.72212 * 8 7 6 10 10 C 1.38812 * 119.99799 * 321.71539 * 8 7 6 11 11 N 1.31618 * 119.99805 * 158.69709 * 10 8 7 12 12 Si 1.86798 * 120.00289 * 338.70190 * 10 8 7 13 13 H 1.48495 * 109.47144 * 95.20075 * 12 10 8 14 14 H 1.48494 * 109.47318 * 215.20590 * 12 10 8 15 15 H 1.48505 * 109.46889 * 335.20132 * 12 10 8 16 16 C 1.46499 * 120.00195 * 95.46988 * 7 6 5 17 17 C 1.50707 * 109.47117 * 90.00167 * 16 7 6 18 18 C 1.38233 * 119.99779 * 269.72931 * 17 16 7 19 19 C 1.38233 * 119.99918 * 180.32484 * 18 17 16 20 20 C 1.38233 * 119.99903 * 359.94462 * 19 18 17 21 21 C 1.38232 * 120.00002 * 0.03060 * 20 19 18 22 22 C 1.38230 * 120.00234 * 359.97438 * 21 20 19 23 23 C 1.38369 * 120.00456 * 0.25561 * 5 4 3 24 24 F 1.35100 * 120.03301 * 179.69983 * 23 5 4 25 25 C 1.38372 * 119.99958 * 180.02562 * 2 1 3 26 26 F 1.35105 * 120.03287 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.47167 * 89.99697 * 1 2 3 28 28 H 1.09001 * 109.47379 * 209.99995 * 1 2 3 29 29 H 1.08999 * 109.46983 * 330.00101 * 1 2 3 30 30 H 1.08003 * 119.95968 * 0.03786 * 3 2 1 31 31 H 1.07997 * 119.96715 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.47166 * 340.32214 * 6 5 4 33 33 H 1.09000 * 109.47159 * 220.32241 * 6 5 4 34 34 H 0.96997 * 120.00195 * 180.02562 * 11 10 8 35 35 H 1.08996 * 109.47206 * 330.00463 * 16 7 6 36 36 H 1.09000 * 109.47651 * 210.00112 * 16 7 6 37 37 H 1.08007 * 120.00364 * 0.26742 * 18 17 16 38 38 H 1.08007 * 120.00072 * 179.97438 * 19 18 17 39 39 H 1.07997 * 119.99765 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.99754 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.99978 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1990 -0.0005 5 6 4.2746 0.0033 -0.0016 6 6 5.7817 0.0070 -0.0028 7 7 6.2716 -0.2399 1.3555 8 6 6.3914 0.7990 2.2396 9 1 6.1417 0.6540 3.2803 10 6 6.8338 2.0384 1.7982 11 7 6.5643 3.1206 2.4973 12 14 7.8115 2.1707 0.2120 13 1 6.8944 2.4992 -0.9088 14 1 8.8315 3.2413 0.3470 15 1 8.4857 0.8765 -0.0632 16 6 6.6335 -1.5982 1.7682 17 6 8.0902 -1.8428 1.4692 18 6 8.4662 -2.3681 0.2471 19 6 9.8018 -2.5987 -0.0247 20 6 10.7615 -2.3029 0.9252 21 6 10.3855 -1.7771 2.1471 22 6 9.0499 -1.5466 2.4189 23 6 3.5857 -1.1967 -0.0075 24 9 4.2634 -2.3654 -0.0147 25 6 2.1988 -1.1983 -0.0005 26 9 1.5240 -2.3688 -0.0016 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6578 2.1323 0.0006 31 1 4.1188 2.1352 -0.0001 32 1 6.1423 0.9756 -0.3486 33 1 6.1464 -0.7753 -0.6684 34 1 6.8731 3.9867 2.1887 35 1 6.0246 -2.3183 1.2216 36 1 6.4581 -1.7119 2.8379 37 1 7.7164 -2.5992 -0.4952 38 1 10.0955 -3.0095 -0.9794 39 1 11.8050 -2.4827 0.7127 40 1 11.1353 -1.5465 2.8895 41 1 8.7562 -1.1362 3.3738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137970070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:38 Heat of formation + Delta-G solvation = -31.034029 kcal Electronic energy + Delta-G solvation = -26696.717523 eV Core-core repulsion = 22791.531456 eV Total energy + Delta-G solvation = -3905.186067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.46591 -49.55523 -40.37457 -39.92428 -37.64661 -34.21824 -33.95029 -32.02665 -31.69094 -31.23869 -29.49918 -27.56516 -26.19339 -23.98939 -23.61409 -23.32795 -22.53106 -21.59616 -19.15536 -18.67872 -18.12123 -17.71307 -17.50244 -17.40656 -17.05802 -16.30200 -16.09630 -15.86326 -15.76285 -15.55305 -15.43969 -14.88036 -14.59251 -14.48102 -14.24469 -14.19460 -14.04926 -13.86739 -13.58714 -13.29276 -13.00672 -12.81919 -12.72212 -12.61065 -12.25175 -12.13125 -12.04879 -12.00009 -11.70291 -11.54219 -10.70051 -9.73015 -9.69336 -9.65286 -9.52864 -8.88805 -8.21595 -5.61301 0.00186 0.03421 0.56603 0.59770 1.22784 1.39108 1.50916 2.35527 2.39512 2.81539 2.92973 3.07928 3.36865 3.53882 3.63129 3.74691 4.00903 4.02899 4.06680 4.13382 4.24527 4.31533 4.34569 4.48938 4.52195 4.65659 4.72272 4.75848 4.79267 4.85475 4.93156 5.00538 5.06345 5.19906 5.23139 5.25538 5.30340 5.43558 5.64659 5.67598 5.82089 5.86301 5.96356 6.15239 6.23808 6.88769 7.54371 7.98301 8.97173 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.005296 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.939740 B = 5286.184281 C = 6600.836545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.097 4.097 3 C -0.093 4.093 4 C -0.089 4.089 5 C -0.108 4.108 6 C 0.172 3.828 7 N -0.592 5.592 8 C -0.248 4.248 9 H 0.044 0.956 10 C 0.005 3.995 11 N -0.935 5.935 12 Si 0.918 3.082 13 H -0.267 1.267 14 H -0.312 1.312 15 H -0.263 1.263 16 C 0.176 3.824 17 C -0.101 4.101 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.132 4.132 22 C -0.121 4.121 23 C 0.061 3.939 24 F -0.136 7.136 25 C 0.045 3.955 26 F -0.136 7.136 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.169 0.831 31 H 0.125 0.875 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.136 0.864 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 -7.933 -7.919 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.098 4.098 3 C -0.111 4.111 4 C -0.108 4.108 5 C -0.111 4.111 6 C 0.047 3.953 7 N -0.312 5.312 8 C -0.377 4.377 9 H 0.062 0.938 10 C -0.193 4.193 11 N -0.578 5.578 12 Si 0.748 3.252 13 H -0.194 1.194 14 H -0.241 1.241 15 H -0.188 1.188 16 C 0.051 3.949 17 C -0.103 4.103 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.140 4.140 23 C 0.041 3.959 24 F -0.115 7.115 25 C 0.025 3.975 26 F -0.114 7.114 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.186 0.814 31 H 0.143 0.857 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.848 -7.876 -7.872 12.145 hybrid contribution 0.847 0.124 -0.205 0.881 sum -4.001 -7.752 -8.077 11.888 Atomic orbital electron populations 1.20806 0.86972 1.04430 1.04211 1.20127 0.98867 0.90055 1.00750 1.21271 0.92906 0.98511 0.98378 1.21129 0.95043 0.97064 0.97533 1.20723 0.98819 0.91602 0.99998 1.20130 0.87580 1.00126 0.87419 1.44141 1.72473 1.04236 1.10365 1.18523 1.38324 0.89208 0.91684 0.93806 1.25788 0.98234 0.95381 0.99859 1.69944 1.47245 0.98421 1.42204 0.86252 0.79807 0.77236 0.81912 1.19397 1.24080 1.18789 1.20150 0.89828 0.85861 0.99014 1.20854 0.97907 0.96815 0.94742 1.21194 0.97093 1.00309 0.96288 1.21410 0.92590 1.00385 1.00234 1.21401 1.00457 0.99870 0.93558 1.21405 0.95656 0.99641 0.98283 1.21152 0.93763 0.99532 0.99582 1.17559 0.88512 0.81862 1.07989 1.91405 1.80000 1.45877 1.94192 1.17605 0.87721 0.82725 1.09412 1.91450 1.79738 1.45848 1.94397 0.88870 0.91278 0.88638 0.81396 0.85743 0.93245 0.91167 0.92671 0.91187 0.93124 0.86108 0.83853 0.83591 0.84643 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.83 71.23 0.70 -1.27 16 2 C -0.10 -2.58 5.88 -19.83 -0.12 -2.70 16 3 C -0.09 -2.56 9.70 22.27 0.22 -2.34 16 4 C -0.09 -3.13 9.67 22.27 0.22 -2.92 16 5 C -0.11 -4.15 5.43 -19.83 -0.11 -4.25 16 6 C 0.17 7.26 4.53 85.64 0.39 7.65 16 7 N -0.59 -27.32 2.05 -710.69 -1.46 -28.77 16 8 C -0.25 -13.44 9.88 84.03 0.83 -12.61 16 9 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 10 C 0.01 0.30 5.34 84.86 0.45 0.75 16 11 N -0.94 -55.29 13.97 21.65 0.30 -54.99 16 12 Si 0.92 44.70 25.00 68.60 1.72 46.41 16 13 H -0.27 -12.07 6.69 99.48 0.67 -11.40 16 14 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 15 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 16 C 0.18 7.23 5.77 85.64 0.49 7.72 16 17 C -0.10 -3.89 5.46 -19.86 -0.11 -4.00 16 18 C -0.13 -4.44 9.70 22.27 0.22 -4.22 16 19 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16 20 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16 21 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 22 C -0.12 -4.61 9.70 22.27 0.22 -4.39 16 23 C 0.06 2.23 7.25 22.41 0.16 2.39 16 24 F -0.14 -5.01 14.49 44.97 0.65 -4.36 16 25 C 0.05 1.46 7.25 22.41 0.16 1.62 16 26 F -0.14 -4.26 16.39 44.97 0.74 -3.52 16 27 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 1.29 7.64 -2.39 -0.02 1.27 16 29 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 30 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.12 4.70 8.03 -2.91 -0.02 4.67 16 32 H 0.05 2.22 2.90 -2.39 -0.01 2.21 16 33 H 0.07 2.72 7.83 -2.39 -0.02 2.70 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.07 2.69 5.82 -2.39 -0.01 2.67 16 36 H 0.05 2.14 7.98 -2.39 -0.02 2.12 16 37 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -64.43 349.49 7.35 -57.08 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.01 Total: 17.81 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 4.39 Total: -29.67 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -1.15 Total: -83.76 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 1.39 Total: -7.87 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.72 Total: 46.41 kcal Total: -64.43 7.35 -57.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137970070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.050 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds