Wall clock time and date at job start Tue Mar 31 2020 11:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38497 * 119.99307 * 2 1 4 4 F 1.35097 * 120.00904 * 0.04325 * 3 2 1 5 5 C 1.38397 * 119.97729 * 180.25526 * 3 2 1 6 6 C 1.38446 * 119.94860 * 359.76699 * 5 3 2 7 7 F 1.35093 * 120.01157 * 180.02562 * 6 5 3 8 8 C 1.38455 * 119.97551 * 0.02562 * 6 5 3 9 9 C 1.38190 * 119.98229 * 179.77132 * 2 1 3 10 10 C 1.50700 * 119.97818 * 359.97438 * 9 2 1 11 11 N 1.46503 * 109.46550 * 77.11396 * 10 9 2 12 12 C 1.36941 * 119.99570 * 224.65130 * 11 10 9 13 13 H 1.07995 * 119.99744 * 188.83659 * 12 11 10 14 14 C 1.38811 * 120.00005 * 8.82776 * 12 11 10 15 15 N 1.31621 * 120.00207 * 41.51518 * 14 12 11 16 16 Si 1.86799 * 119.99807 * 221.51135 * 14 12 11 17 17 H 1.48502 * 109.47236 * 90.00306 * 16 14 12 18 18 H 1.48505 * 109.47128 * 209.99958 * 16 14 12 19 19 H 1.48501 * 109.47688 * 330.00309 * 16 14 12 20 20 C 1.46501 * 120.00349 * 44.64878 * 11 10 9 21 21 C 1.50695 * 109.46848 * 263.46860 * 20 11 10 22 22 C 1.38242 * 120.00029 * 98.84966 * 21 20 11 23 23 C 1.38231 * 120.00117 * 179.97438 * 22 21 20 24 24 C 1.38239 * 120.00186 * 0.09175 * 23 22 21 25 25 C 1.38231 * 119.99856 * 359.86117 * 24 23 22 26 26 C 1.38233 * 120.00279 * 278.81844 * 21 20 11 27 27 H 1.09001 * 109.46929 * 261.53037 * 1 2 3 28 28 H 1.09005 * 109.47225 * 21.52793 * 1 2 3 29 29 H 1.08997 * 109.47695 * 141.53112 * 1 2 3 30 30 H 1.07991 * 120.02482 * 179.75159 * 5 3 2 31 31 H 1.07996 * 119.98797 * 180.02562 * 8 6 5 32 32 H 1.08997 * 109.47092 * 317.11424 * 10 9 2 33 33 H 1.09002 * 109.47163 * 197.10717 * 10 9 2 34 34 H 0.96991 * 120.00304 * 185.01440 * 15 14 12 35 35 H 1.08997 * 109.46833 * 143.46902 * 20 11 10 36 36 H 1.08996 * 109.47108 * 23.46984 * 20 11 10 37 37 H 1.08005 * 119.99692 * 359.69026 * 22 21 20 38 38 H 1.07997 * 119.99984 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.00105 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00052 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.00045 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1995 0.0000 4 9 1.5239 2.3695 0.0009 5 6 3.5833 1.1991 -0.0053 6 6 4.2741 -0.0007 -0.0058 7 9 5.6250 -0.0025 -0.0105 8 6 3.5799 -1.1986 -0.0015 9 6 2.1975 -1.1970 0.0048 10 6 1.4431 -2.5015 0.0106 11 7 0.9316 -2.7756 -1.3346 12 6 -0.3546 -3.2151 -1.5015 13 1 -0.6882 -3.5528 -2.4715 14 6 -1.2295 -3.2266 -0.4239 15 7 -1.2475 -2.2167 0.4201 16 14 -2.3815 -4.6752 -0.1715 17 1 -1.7153 -5.6955 0.6773 18 1 -3.6233 -4.2097 0.4967 19 1 -2.7218 -5.2724 -1.4879 20 6 1.7959 -2.5796 -2.5011 21 6 1.5289 -1.2236 -3.1018 22 6 2.3652 -0.1619 -2.8111 23 6 2.1206 1.0818 -3.3626 24 6 1.0386 1.2645 -4.2032 25 6 0.2028 0.2027 -4.4947 26 6 0.4480 -1.0414 -3.9441 27 1 -0.3633 -0.1514 1.0165 28 1 -0.3634 0.9560 -0.3771 29 1 -0.3634 -0.8046 -0.6393 30 1 4.1239 2.1340 -0.0094 31 1 4.1186 -2.1346 -0.0014 32 1 0.6097 -2.4362 0.7100 33 1 2.1117 -3.3065 0.3160 34 1 -1.8055 -2.2566 1.2124 35 1 1.5879 -3.3522 -3.2413 36 1 2.8399 -2.6419 -2.1943 37 1 3.2071 -0.3032 -2.1495 38 1 2.7738 1.9112 -3.1351 39 1 0.8472 2.2363 -4.6337 40 1 -0.6423 0.3453 -5.1518 41 1 -0.2054 -1.8707 -4.1713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143767550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:43 Heat of formation + Delta-G solvation = -7.328562 kcal Electronic energy + Delta-G solvation = -28082.775147 eV Core-core repulsion = 24178.617027 eV Total energy + Delta-G solvation = -3904.158120 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.91387 -49.89534 -40.86478 -39.41779 -37.37633 -33.98994 -33.27609 -32.41158 -31.57235 -31.29033 -28.01619 -27.28889 -26.90352 -24.02586 -23.26672 -22.94414 -22.19133 -21.47078 -18.92787 -18.46367 -18.24772 -17.63543 -16.89195 -16.76376 -16.60539 -16.26019 -16.14799 -15.94212 -15.85960 -15.60244 -15.17023 -14.97394 -14.70376 -14.14545 -13.94034 -13.79388 -13.74973 -13.49030 -13.25002 -12.78651 -12.74173 -12.59886 -12.49080 -12.34019 -12.23389 -12.01886 -11.87281 -11.68733 -11.64483 -11.45762 -10.30630 -9.86100 -9.67096 -9.43366 -9.16967 -8.81473 -7.74875 -5.07572 0.10785 0.14776 0.69165 0.71539 1.53215 1.63537 1.65493 2.45527 2.64022 2.95929 3.08394 3.16573 3.53299 3.74115 3.89977 3.94117 4.10059 4.15026 4.23043 4.28345 4.31999 4.42242 4.60817 4.81433 4.81884 4.84788 4.91037 4.94218 4.98190 5.10060 5.19569 5.20718 5.33974 5.34830 5.37122 5.62207 5.75250 5.75851 5.78731 5.81999 5.92363 6.00496 6.25865 6.34084 6.46005 7.17584 7.87098 8.30126 9.08141 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.006595 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.135634 B = 4244.694545 C = 4964.452018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.088 4.088 3 C 0.106 3.894 4 F -0.142 7.142 5 C -0.190 4.190 6 C 0.109 3.891 7 F -0.136 7.136 8 C -0.159 4.159 9 C -0.032 4.032 10 C 0.153 3.847 11 N -0.576 5.576 12 C -0.246 4.246 13 H 0.074 0.926 14 C -0.032 4.032 15 N -0.869 5.869 16 Si 0.921 3.079 17 H -0.296 1.296 18 H -0.307 1.307 19 H -0.282 1.282 20 C 0.175 3.825 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.114 4.114 27 H 0.058 0.942 28 H 0.016 0.984 29 H 0.128 0.872 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.114 0.886 33 H 0.030 0.970 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.773 5.417 -3.420 10.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C 0.086 3.914 4 F -0.121 7.121 5 C -0.209 4.209 6 C 0.090 3.910 7 F -0.114 7.114 8 C -0.178 4.178 9 C -0.034 4.034 10 C 0.028 3.972 11 N -0.295 5.295 12 C -0.375 4.375 13 H 0.092 0.908 14 C -0.229 4.229 15 N -0.515 5.515 16 Si 0.752 3.248 17 H -0.224 1.224 18 H -0.235 1.235 19 H -0.207 1.207 20 C 0.050 3.950 21 C -0.097 4.097 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.150 4.150 26 C -0.133 4.133 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.146 0.854 30 H 0.178 0.822 31 H 0.168 0.832 32 H 0.130 0.870 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.637 5.458 -3.334 10.747 hybrid contribution -0.830 -0.281 0.429 0.976 sum 7.807 5.177 -2.905 9.808 Atomic orbital electron populations 1.21107 0.88814 1.01705 1.03715 1.20130 0.98160 0.91134 0.99510 1.17277 0.89463 0.80866 1.03764 1.91437 1.80545 1.46087 1.94019 1.20943 0.92342 0.99359 1.08287 1.17086 0.76714 0.93544 1.03673 1.91489 1.28486 1.97373 1.94090 1.21257 0.93951 0.97884 1.04731 1.20169 0.92364 0.96198 0.94679 1.20620 0.98285 0.88785 0.89463 1.44535 1.09977 1.74840 1.00160 1.19330 0.88301 1.33169 0.96688 0.90796 1.24847 0.98586 0.98989 1.00507 1.70506 1.40922 1.25096 1.14981 0.85965 0.78202 0.83277 0.77378 1.22350 1.23480 1.20710 1.20032 0.94486 0.91391 0.89104 1.20882 0.95091 0.98351 0.95358 1.21205 0.99852 0.93086 0.99575 1.21191 0.98445 0.97051 0.98250 1.21237 0.95591 0.99176 0.99386 1.21285 0.99904 0.93049 1.00772 1.21052 0.97077 0.97615 0.97580 0.92340 0.96471 0.85412 0.82160 0.83153 0.86970 0.95195 0.93925 0.92507 0.91655 0.86724 0.85966 0.84761 0.85221 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.24 7.78 71.23 0.55 -3.68 16 2 C -0.09 -3.33 4.22 -19.81 -0.08 -3.42 16 3 C 0.11 3.60 6.24 22.37 0.14 3.74 16 4 F -0.14 -5.01 16.34 44.97 0.73 -4.28 16 5 C -0.19 -5.47 9.50 22.36 0.21 -5.26 16 6 C 0.11 3.13 6.24 22.37 0.14 3.27 16 7 F -0.14 -3.68 17.27 44.97 0.78 -2.91 16 8 C -0.16 -4.85 7.79 22.32 0.17 -4.67 16 9 C -0.03 -1.16 3.15 -19.88 -0.06 -1.22 16 10 C 0.15 6.25 5.16 85.63 0.44 6.69 16 11 N -0.58 -24.23 2.24 -710.70 -1.59 -25.82 16 12 C -0.25 -11.58 8.70 84.03 0.73 -10.84 16 13 H 0.07 3.53 8.06 -2.91 -0.02 3.50 16 14 C -0.03 -1.55 4.65 84.86 0.39 -1.16 16 15 N -0.87 -42.56 6.84 21.65 0.15 -42.41 16 16 Si 0.92 40.66 29.69 68.60 2.04 42.70 16 17 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 18 H -0.31 -14.04 7.11 99.48 0.71 -13.34 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 C 0.18 6.42 5.27 85.63 0.45 6.87 16 21 C -0.09 -3.40 5.09 -19.87 -0.10 -3.51 16 22 C -0.12 -4.00 6.29 22.27 0.14 -3.86 16 23 C -0.13 -4.11 9.92 22.27 0.22 -3.89 16 24 C -0.14 -4.07 10.05 22.27 0.22 -3.85 16 25 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 26 C -0.11 -4.13 9.60 22.27 0.21 -3.91 16 27 H 0.06 2.66 7.39 -2.39 -0.02 2.64 16 28 H 0.02 0.72 7.41 -2.38 -0.02 0.70 16 29 H 0.13 6.26 3.96 -2.39 -0.01 6.25 16 30 H 0.16 3.78 8.06 -2.92 -0.02 3.76 16 31 H 0.15 4.02 8.02 -2.91 -0.02 4.00 16 32 H 0.11 5.24 4.33 -2.39 -0.01 5.23 16 33 H 0.03 1.16 7.97 -2.39 -0.02 1.14 16 34 H 0.25 12.18 8.32 -92.72 -0.77 11.41 16 35 H 0.06 2.04 8.09 -2.39 -0.02 2.02 16 36 H 0.07 2.18 7.13 -2.39 -0.02 2.16 16 37 H 0.11 3.77 4.10 -2.91 -0.01 3.75 16 38 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.11 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -49.53 328.43 7.18 -42.35 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 1.06 Total: 23.05 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 4.01 Total: -32.69 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.45 Total: -68.24 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 1.51 Total: -7.18 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.04 Total: 42.70 kcal Total: -49.53 7.18 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143767550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.025 kcal (2) G-P(sol) polarization free energy of solvation -49.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds