Wall clock time and date at job start Tue Mar 31 2020 12:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38202 * 120.26094 * 2 1 4 4 N 1.31969 * 121.17116 * 179.97438 * 3 2 1 5 5 C 1.32298 * 121.77078 * 359.97438 * 4 3 2 6 6 N 1.38742 * 119.80820 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99879 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47209 * 204.99832 * 7 6 5 9 9 N 1.27937 * 120.00131 * 4.99845 * 8 7 6 10 10 Si 1.86804 * 120.00012 * 184.99646 * 8 7 6 11 11 H 1.48500 * 109.46856 * 90.00092 * 10 8 7 12 12 H 1.48502 * 109.47259 * 209.99801 * 10 8 7 13 13 H 1.48494 * 109.47067 * 330.00348 * 10 8 7 14 14 C 1.50703 * 109.47279 * 84.99403 * 7 6 5 15 15 N 1.34772 * 119.99905 * 179.97438 * 14 7 6 16 16 O 1.21277 * 119.99817 * 0.02562 * 14 7 6 17 17 C 1.40383 * 120.38710 * 0.02562 * 5 4 3 18 18 C 1.43207 * 120.58642 * 180.02562 * 17 5 4 19 19 C 4.83970 * 136.21442 * 179.97438 * 2 1 3 20 20 Si 6.70057 * 132.35428 * 179.97438 * 2 1 3 21 21 C 1.86302 * 109.47127 * 230.70473 * 20 19 18 22 22 C 1.86292 * 109.47406 * 350.70866 * 20 19 18 23 23 C 1.86304 * 109.46894 * 110.70752 * 20 19 18 24 24 C 1.38528 * 120.26261 * 179.71534 * 2 1 3 25 25 H 1.09001 * 109.46953 * 90.00145 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99743 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00373 * 1 2 3 28 28 H 1.08001 * 119.41583 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00291 * 180.02562 * 6 5 4 30 30 H 1.09009 * 109.46975 * 325.00047 * 7 6 5 31 31 H 0.97002 * 120.00019 * 180.02562 * 9 8 7 32 32 H 0.97002 * 120.00568 * 0.02562 * 15 14 7 33 33 H 0.97005 * 119.99884 * 180.02562 * 15 14 7 34 34 H 1.08997 * 109.46998 * 60.00094 * 21 20 19 35 35 H 1.08993 * 109.47143 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.47082 * 300.00389 * 21 20 19 37 37 H 1.09003 * 109.47432 * 59.99976 * 22 20 19 38 38 H 1.09007 * 109.47440 * 179.97438 * 22 20 19 39 39 H 1.09005 * 109.47106 * 299.99960 * 22 20 19 40 40 H 1.09002 * 109.47167 * 59.99702 * 23 20 19 41 41 H 1.09001 * 109.47231 * 179.97438 * 23 20 19 42 42 H 1.08996 * 109.46942 * 299.99915 * 23 20 19 43 43 H 1.08000 * 120.81378 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2035 1.1937 0.0000 4 7 3.5230 1.2147 0.0005 5 6 4.2374 0.1011 0.0015 6 7 5.6231 0.1707 0.0015 7 6 6.2910 1.4745 0.0009 8 6 7.6661 1.3342 -0.5995 9 7 8.0359 0.2150 -1.0968 10 14 8.8308 2.7946 -0.6176 11 1 9.6444 2.7942 0.6247 12 1 9.7281 2.6976 -1.7969 13 1 8.0459 4.0528 -0.6948 14 6 6.4098 1.9788 1.4161 15 7 6.9953 3.1678 1.6608 16 8 5.9793 1.3143 2.3347 17 6 3.6016 -1.1504 0.0016 18 6 4.3706 -2.3585 0.0032 19 6 5.0010 -3.3489 0.0015 20 14 6.0213 -4.9517 0.0022 21 6 7.2929 -4.8777 1.3618 22 6 4.8926 -6.4063 0.2860 23 6 6.8791 -5.1425 -1.6406 24 6 2.2052 -1.1965 0.0059 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6582 2.1260 -0.0004 29 1 6.1496 -0.6440 0.0019 30 1 5.7074 2.1815 -0.5889 31 1 8.9211 0.1246 -1.4829 32 1 7.3399 3.6992 0.9261 33 1 7.0720 3.4923 2.5718 34 1 6.7911 -4.7661 2.3229 35 1 7.8785 -5.7970 1.3619 36 1 7.9533 -4.0266 1.1957 37 1 4.1486 -6.4496 -0.5095 38 1 5.4779 -7.3259 0.2860 39 1 4.3907 -6.2947 1.2472 40 1 7.5395 -4.2914 -1.8067 41 1 7.4648 -6.0617 -1.6401 42 1 6.1351 -5.1857 -2.4360 43 1 1.6829 -2.1418 0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159474619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:32 Heat of formation + Delta-G solvation = 38.914029 kcal Electronic energy + Delta-G solvation = -23994.275582 eV Core-core repulsion = 20585.053666 eV Total energy + Delta-G solvation = -3409.221916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47657 -40.50063 -37.76206 -35.89830 -34.81575 -34.80290 -33.25574 -31.15780 -29.53886 -29.45682 -28.37857 -28.36843 -26.79661 -24.84029 -23.18019 -22.82815 -20.97103 -19.35168 -19.14857 -18.40248 -17.87989 -17.52686 -17.20068 -16.29869 -15.62572 -15.59319 -15.44283 -15.15422 -14.92097 -14.49951 -14.20469 -13.97679 -13.97521 -13.95015 -13.86173 -13.76236 -13.35748 -13.28152 -13.27538 -13.16998 -13.05303 -12.87789 -12.46319 -12.30987 -12.07564 -11.98998 -11.57657 -11.51729 -10.92624 -10.74058 -10.71297 -10.70924 -10.35013 -10.20439 -9.99407 -8.37173 0.05924 0.40302 0.57515 0.62322 0.99894 1.29737 1.44590 1.50639 1.61737 1.73061 1.74807 2.14697 2.45104 2.48013 2.50467 2.60715 3.11713 3.30486 3.63292 3.82438 3.99840 4.04551 4.11443 4.26390 4.34293 4.52702 4.57730 4.74788 4.75349 4.79198 4.79857 4.80577 4.81730 4.82217 4.95207 5.08125 5.18970 5.46385 5.48372 5.57889 5.59151 5.63306 5.72611 6.04564 6.23129 6.49238 6.52073 6.90009 7.17676 7.32576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.200 4.200 3 C 0.161 3.839 4 N -0.541 5.541 5 C 0.429 3.571 6 N -0.681 5.681 7 C 0.168 3.832 8 C -0.028 4.028 9 N -0.607 5.607 10 Si 0.938 3.062 11 H -0.226 1.226 12 H -0.238 1.238 13 H -0.225 1.225 14 C 0.512 3.488 15 N -0.858 5.858 16 O -0.511 6.511 17 C -0.107 4.107 18 C -0.123 4.123 19 C -0.404 4.404 20 Si 1.143 2.857 21 C -0.453 4.453 22 C -0.452 4.452 23 C -0.451 4.451 24 C -0.011 4.011 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.159 0.841 29 H 0.425 0.575 30 H 0.141 0.859 31 H 0.349 0.651 32 H 0.393 0.607 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 2.283 -2.588 4.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.204 4.204 3 C 0.003 3.997 4 N -0.258 5.258 5 C 0.192 3.808 6 N -0.314 5.314 7 C 0.056 3.944 8 C -0.277 4.277 9 N -0.221 5.221 10 Si 0.753 3.247 11 H -0.149 1.149 12 H -0.162 1.162 13 H -0.149 1.149 14 C 0.293 3.707 15 N -0.429 5.429 16 O -0.384 6.384 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.439 4.439 20 Si 1.328 2.672 21 C -0.560 4.560 22 C -0.560 4.560 23 C -0.559 4.559 24 C -0.036 4.036 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.176 0.824 29 H 0.265 0.735 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.225 0.775 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.794 2.513 -2.253 4.381 hybrid contribution 0.193 -0.100 -0.086 0.234 sum 2.987 2.412 -2.339 4.495 Atomic orbital electron populations 1.20582 0.89951 1.02909 1.02276 1.20518 0.97620 0.93462 1.08829 1.22406 0.88226 0.97643 0.91436 1.67132 1.08601 1.28634 1.21384 1.18211 0.85042 0.88238 0.89302 1.43903 1.01559 1.07301 1.78634 1.20022 0.91632 0.89199 0.93504 1.30523 0.99973 1.02560 0.94610 1.67888 1.22536 1.25832 1.05867 0.85711 0.78936 0.76492 0.83517 1.14860 1.16154 1.14876 1.20870 0.77092 0.81250 0.91509 1.44336 1.63317 1.22061 1.13198 1.90788 1.45860 1.56377 1.45336 1.16298 0.92534 0.88639 1.13972 1.20573 0.98001 0.94394 0.99390 1.35857 1.01555 1.04730 1.01754 0.76971 0.63935 0.59046 0.67212 1.26121 1.11906 1.04808 1.13205 1.26112 1.10685 1.13875 1.05305 1.26107 1.08033 1.04929 1.16830 1.21318 0.91453 0.98557 0.92310 0.91361 0.91650 0.91374 0.82429 0.73483 0.84238 0.83238 0.77492 0.76045 0.90918 0.90542 0.90963 0.90929 0.90504 0.90911 0.90850 0.90577 0.90958 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.03 10.03 36.01 0.36 0.39 16 2 C -0.20 -0.48 5.89 -104.53 -0.62 -1.09 16 3 C 0.16 0.45 10.83 -17.51 -0.19 0.26 16 4 N -0.54 -2.56 9.19 -12.16 -0.11 -2.67 16 5 C 0.43 2.39 7.37 -154.89 -1.14 1.25 16 6 N -0.68 -2.96 4.49 -55.94 -0.25 -3.21 16 7 C 0.17 0.29 2.61 -70.23 -0.18 0.11 16 8 C -0.03 0.01 5.36 -13.90 -0.07 -0.06 16 9 N -0.61 -0.09 12.48 56.22 0.70 0.61 16 10 Si 0.94 -3.01 25.67 -169.99 -4.36 -7.37 16 11 H -0.23 0.63 7.11 56.52 0.40 1.03 16 12 H -0.24 0.64 7.11 56.52 0.40 1.04 16 13 H -0.23 1.08 6.43 56.52 0.36 1.44 16 14 C 0.51 1.42 7.34 -10.99 -0.08 1.34 16 15 N -0.86 1.02 7.86 31.22 0.25 1.26 16 16 O -0.51 -3.78 17.19 5.56 0.10 -3.68 16 17 C -0.11 -0.60 5.76 -106.61 -0.61 -1.21 16 18 C -0.12 -0.67 12.03 -38.83 -0.47 -1.14 16 19 C -0.40 -1.38 12.14 29.55 0.36 -1.02 16 20 Si 1.14 -1.30 14.26 -169.99 -2.42 -3.72 16 21 C -0.45 0.22 8.65 101.05 0.87 1.10 16 22 C -0.45 0.39 8.65 101.05 0.87 1.27 16 23 C -0.45 0.42 8.65 101.05 0.87 1.29 16 24 C -0.01 -0.04 9.57 -38.92 -0.37 -0.41 16 25 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.06 -0.04 8.09 -51.93 -0.42 -0.46 16 27 H 0.07 -0.09 8.09 -51.93 -0.42 -0.51 16 28 H 0.16 -0.02 8.06 -52.49 -0.42 -0.45 16 29 H 0.42 1.95 6.58 -40.82 -0.27 1.68 16 30 H 0.14 0.05 7.54 -51.92 -0.39 -0.34 16 31 H 0.35 -0.74 8.23 -40.82 -0.34 -1.07 16 32 H 0.39 -1.40 4.62 -40.82 -0.19 -1.58 16 33 H 0.41 -0.91 8.93 -40.82 -0.36 -1.28 16 34 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 35 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 37 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 38 H 0.08 -0.13 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 40 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 41 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 43 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 374.70 15.07 5.65 5.65 Total: 0.00 -9.43 374.70 -7.07 -16.50 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -6.21 Total: -5.43 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.40 Total: 2.07 kcal Atomic # 7 Polarization: -4.59 SS G_CDS: 0.58 Total: -4.01 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: 0.10 Total: -3.68 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: -6.79 Total: -11.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -9.43 -7.07 -16.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159474619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.411 kcal (2) G-P(sol) polarization free energy of solvation -9.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds