Wall clock time and date at job start Tue Mar 31 2020 12:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38202 * 120.26094 * 2 1 4 4 N 1.31969 * 121.17116 * 179.97438 * 3 2 1 5 5 C 1.32298 * 121.77078 * 359.97438 * 4 3 2 6 6 N 1.38742 * 119.80820 * 179.97438 * 5 4 3 7 7 C 1.46500 * 119.99879 * 0.02562 * 6 5 4 8 8 C 1.50697 * 109.47209 * 204.99832 * 7 6 5 9 9 N 1.27937 * 120.00131 * 4.99845 * 8 7 6 10 10 Si 1.86804 * 120.00012 * 184.99646 * 8 7 6 11 11 H 1.48500 * 109.46856 * 90.00092 * 10 8 7 12 12 H 1.48502 * 109.47259 * 209.99801 * 10 8 7 13 13 H 1.48494 * 109.47067 * 330.00348 * 10 8 7 14 14 C 1.50703 * 109.47279 * 84.99403 * 7 6 5 15 15 N 1.34772 * 119.99905 * 179.97438 * 14 7 6 16 16 O 1.21277 * 119.99817 * 0.02562 * 14 7 6 17 17 C 1.40383 * 120.38710 * 0.02562 * 5 4 3 18 18 C 1.43207 * 120.58642 * 180.02562 * 17 5 4 19 19 C 4.83970 * 136.21442 * 179.97438 * 2 1 3 20 20 Si 6.70057 * 132.35428 * 179.97438 * 2 1 3 21 21 C 1.86302 * 109.47127 * 230.70473 * 20 19 18 22 22 C 1.86292 * 109.47406 * 350.70866 * 20 19 18 23 23 C 1.86304 * 109.46894 * 110.70752 * 20 19 18 24 24 C 1.38528 * 120.26261 * 179.71534 * 2 1 3 25 25 H 1.09001 * 109.46953 * 90.00145 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99743 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00373 * 1 2 3 28 28 H 1.08001 * 119.41583 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00291 * 180.02562 * 6 5 4 30 30 H 1.09009 * 109.46975 * 325.00047 * 7 6 5 31 31 H 0.97002 * 120.00019 * 180.02562 * 9 8 7 32 32 H 0.97002 * 120.00568 * 0.02562 * 15 14 7 33 33 H 0.97005 * 119.99884 * 180.02562 * 15 14 7 34 34 H 1.08997 * 109.46998 * 60.00094 * 21 20 19 35 35 H 1.08993 * 109.47143 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.47082 * 300.00389 * 21 20 19 37 37 H 1.09003 * 109.47432 * 59.99976 * 22 20 19 38 38 H 1.09007 * 109.47440 * 179.97438 * 22 20 19 39 39 H 1.09005 * 109.47106 * 299.99960 * 22 20 19 40 40 H 1.09002 * 109.47167 * 59.99702 * 23 20 19 41 41 H 1.09001 * 109.47231 * 179.97438 * 23 20 19 42 42 H 1.08996 * 109.46942 * 299.99915 * 23 20 19 43 43 H 1.08000 * 120.81378 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2035 1.1937 0.0000 4 7 3.5230 1.2147 0.0005 5 6 4.2374 0.1011 0.0015 6 7 5.6231 0.1707 0.0015 7 6 6.2910 1.4745 0.0009 8 6 7.6661 1.3342 -0.5995 9 7 8.0359 0.2150 -1.0968 10 14 8.8308 2.7946 -0.6176 11 1 9.6444 2.7942 0.6247 12 1 9.7281 2.6976 -1.7969 13 1 8.0459 4.0528 -0.6948 14 6 6.4098 1.9788 1.4161 15 7 6.9953 3.1678 1.6608 16 8 5.9793 1.3143 2.3347 17 6 3.6016 -1.1504 0.0016 18 6 4.3706 -2.3585 0.0032 19 6 5.0010 -3.3489 0.0015 20 14 6.0213 -4.9517 0.0022 21 6 7.2929 -4.8777 1.3618 22 6 4.8926 -6.4063 0.2860 23 6 6.8791 -5.1425 -1.6406 24 6 2.2052 -1.1965 0.0059 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6582 2.1260 -0.0004 29 1 6.1496 -0.6440 0.0019 30 1 5.7074 2.1815 -0.5889 31 1 8.9211 0.1246 -1.4829 32 1 7.3399 3.6992 0.9261 33 1 7.0720 3.4923 2.5718 34 1 6.7911 -4.7661 2.3229 35 1 7.8785 -5.7970 1.3619 36 1 7.9533 -4.0266 1.1957 37 1 4.1486 -6.4496 -0.5095 38 1 5.4779 -7.3259 0.2860 39 1 4.3907 -6.2947 1.2472 40 1 7.5395 -4.2914 -1.8067 41 1 7.4648 -6.0617 -1.6401 42 1 6.1351 -5.1857 -2.4360 43 1 1.6829 -2.1418 0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159474619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:31 Heat of formation + Delta-G solvation = 41.371614 kcal Electronic energy + Delta-G solvation = -23994.169013 eV Core-core repulsion = 20585.053666 eV Total energy + Delta-G solvation = -3409.115348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69045 -40.71487 -37.88465 -36.01359 -35.06480 -34.95171 -33.40683 -31.39367 -29.57662 -29.47698 -28.32380 -28.30312 -26.92363 -25.06564 -23.31422 -23.00099 -21.08550 -19.42800 -19.34289 -18.58218 -18.03199 -17.60651 -17.25920 -16.41219 -15.82582 -15.80758 -15.57482 -15.27267 -15.02795 -14.44573 -14.18022 -14.15316 -13.96547 -13.91563 -13.90290 -13.81773 -13.41128 -13.20924 -13.18618 -13.09887 -13.01650 -12.91950 -12.58995 -12.19286 -12.13406 -11.95933 -11.76936 -11.67520 -10.93731 -10.91882 -10.81439 -10.77496 -10.48905 -10.27799 -10.18563 -8.60433 -0.19515 0.34190 0.50207 0.77712 1.24055 1.37692 1.39841 1.58603 1.66573 1.68029 1.70853 2.01648 2.37613 2.38457 2.46160 2.47358 3.02484 3.13018 3.44375 3.76650 3.81792 3.88256 4.02215 4.09775 4.20185 4.44647 4.57541 4.79021 4.80046 4.81366 4.84445 4.86310 4.87139 4.87729 4.90534 4.93073 5.14507 5.31113 5.50625 5.54667 5.64000 5.66055 5.71857 5.90954 6.16043 6.20158 6.60139 6.63657 7.04537 7.09369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.198 4.198 3 C 0.151 3.849 4 N -0.551 5.551 5 C 0.408 3.592 6 N -0.687 5.687 7 C 0.159 3.841 8 C -0.037 4.037 9 N -0.634 5.634 10 Si 0.970 3.030 11 H -0.229 1.229 12 H -0.242 1.242 13 H -0.194 1.194 14 C 0.513 3.487 15 N -0.837 5.837 16 O -0.566 6.566 17 C -0.137 4.137 18 C -0.171 4.171 19 C -0.404 4.404 20 Si 1.194 2.806 21 C -0.463 4.463 22 C -0.458 4.458 23 C -0.457 4.457 24 C -0.024 4.024 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.188 0.812 29 H 0.418 0.582 30 H 0.151 0.849 31 H 0.360 0.640 32 H 0.407 0.593 33 H 0.415 0.585 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 2.998 -3.103 5.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.202 4.202 3 C -0.007 4.007 4 N -0.268 5.268 5 C 0.171 3.829 6 N -0.319 5.319 7 C 0.048 3.952 8 C -0.283 4.283 9 N -0.249 5.249 10 Si 0.781 3.219 11 H -0.152 1.152 12 H -0.166 1.166 13 H -0.116 1.116 14 C 0.294 3.706 15 N -0.408 5.408 16 O -0.443 6.443 17 C -0.144 4.144 18 C -0.172 4.172 19 C -0.435 4.435 20 Si 1.376 2.624 21 C -0.570 4.570 22 C -0.566 4.566 23 C -0.564 4.564 24 C -0.049 4.049 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.204 0.796 29 H 0.258 0.742 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.242 0.758 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.138 3.300 -2.786 5.338 hybrid contribution 0.079 -0.347 0.070 0.363 sum 3.217 2.953 -2.716 5.142 Atomic orbital electron populations 1.20629 0.87773 1.03801 1.03154 1.20841 0.99104 0.92804 1.07457 1.22988 0.87908 0.99071 0.90718 1.67165 1.09486 1.28406 1.21784 1.18464 0.85717 0.88618 0.90075 1.43998 1.01330 1.08046 1.78546 1.20300 0.93099 0.88459 0.93300 1.31057 0.99310 1.04085 0.93816 1.67860 1.23539 1.26935 1.06587 0.85324 0.77745 0.75735 0.83052 1.15185 1.16563 1.11592 1.21060 0.76487 0.81700 0.91311 1.44175 1.61606 1.20775 1.14291 1.90761 1.48573 1.58159 1.46815 1.16635 0.93585 0.89027 1.15112 1.21108 0.99559 0.95448 1.01084 1.37413 1.00656 1.05242 1.00190 0.76400 0.62617 0.56738 0.66654 1.26241 1.12301 1.05342 1.13118 1.26168 1.10840 1.14528 1.05057 1.26159 1.08146 1.05519 1.16626 1.21584 0.91105 0.99716 0.92506 0.90355 0.91291 0.89950 0.79553 0.74245 0.83169 0.82062 0.75803 0.75186 0.91647 0.89008 0.91558 0.90995 0.89067 0.91326 0.91284 0.89093 0.91177 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.10 10.03 71.24 0.71 0.82 16 2 C -0.20 -1.12 5.89 -19.80 -0.12 -1.24 16 3 C 0.15 0.96 10.83 84.66 0.92 1.88 16 4 N -0.55 -6.17 9.19 -192.40 -1.77 -7.94 16 5 C 0.41 5.68 7.37 133.49 0.98 6.66 16 6 N -0.69 -7.87 4.49 -330.89 -1.49 -9.35 16 7 C 0.16 0.79 2.61 43.50 0.11 0.90 16 8 C -0.04 0.01 5.36 88.67 0.48 0.48 16 9 N -0.63 -1.15 12.48 24.11 0.30 -0.85 16 10 Si 0.97 -7.30 25.67 68.60 1.76 -5.54 16 11 H -0.23 1.55 7.11 99.48 0.71 2.26 16 12 H -0.24 1.57 7.11 99.48 0.71 2.27 16 13 H -0.19 2.41 6.43 99.48 0.64 3.05 16 14 C 0.51 3.49 7.34 87.66 0.64 4.14 16 15 N -0.84 2.17 7.86 -173.54 -1.36 0.80 16 16 O -0.57 -9.76 17.19 -3.02 -0.05 -9.81 16 17 C -0.14 -1.95 5.76 -21.15 -0.12 -2.07 16 18 C -0.17 -2.43 12.03 30.02 0.36 -2.07 16 19 C -0.40 -3.71 12.14 74.32 0.90 -2.81 16 20 Si 1.19 -2.01 14.26 68.60 0.98 -1.03 16 21 C -0.46 0.20 8.65 113.37 0.98 1.18 16 22 C -0.46 0.85 8.65 113.37 0.98 1.83 16 23 C -0.46 0.84 8.65 113.37 0.98 1.82 16 24 C -0.02 -0.23 9.57 22.70 0.22 -0.01 16 25 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.07 -0.10 8.09 -2.39 -0.02 -0.12 16 27 H 0.08 -0.30 8.09 -2.39 -0.02 -0.32 16 28 H 0.19 -0.14 8.06 -2.91 -0.02 -0.17 16 29 H 0.42 5.29 6.58 -92.71 -0.61 4.68 16 30 H 0.15 0.27 7.54 -2.38 -0.02 0.25 16 31 H 0.36 -1.09 8.23 -92.71 -0.76 -1.85 16 32 H 0.41 -3.43 4.62 -92.71 -0.43 -3.86 16 33 H 0.41 -1.97 8.93 -92.70 -0.83 -2.80 16 34 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 35 H 0.09 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 37 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 38 H 0.09 -0.41 7.96 -2.38 -0.02 -0.43 16 39 H 0.07 -0.05 7.96 -2.38 -0.02 -0.06 16 40 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 41 H 0.09 -0.42 7.96 -2.39 -0.02 -0.44 16 42 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 43 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 Total: 0.00 -25.17 374.70 5.53 -19.63 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -0.87 Total: 2.56 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 8.03 Total: 11.52 kcal Atomic # 7 Polarization: -13.01 SS G_CDS: -4.32 Total: -17.33 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.05 Total: -9.81 kcal Atomic # 14 Polarization: -9.31 SS G_CDS: 2.74 Total: -6.57 kcal Total: -25.17 5.53 -19.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159474619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.006 kcal (2) G-P(sol) polarization free energy of solvation -25.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds