Wall clock time and date at job start Tue Mar 31 2020 11:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38340 * 119.93960 * 2 1 4 4 C 1.38309 * 120.24854 * 180.25329 * 3 2 1 5 5 C 1.38033 * 120.11786 * 359.75429 * 4 3 2 6 6 C 1.39337 * 119.88032 * 359.97438 * 5 4 3 7 7 C 1.48352 * 120.12282 * 180.02562 * 6 5 4 8 8 N 1.30899 * 121.24824 * 180.02562 * 7 6 5 9 9 S 1.69928 * 105.77677 * 179.97438 * 8 7 6 10 10 C 1.72253 * 94.71544 * 359.97438 * 9 8 7 11 11 N 1.38293 * 127.38657 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00161 * 0.02562 * 11 10 9 13 13 C 1.52999 * 109.47175 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46856 * 299.99977 * 13 12 11 15 15 C 1.52998 * 109.47174 * 59.99628 * 13 12 11 16 16 C 1.50692 * 109.47324 * 180.02562 * 13 12 11 17 17 H 1.08007 * 119.99852 * 359.97438 * 16 13 12 18 18 C 1.37869 * 120.00368 * 179.97438 * 16 13 12 19 19 N 1.31522 * 120.00064 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 120.00375 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46979 * 90.00083 * 20 18 16 22 22 H 1.48502 * 109.47078 * 210.00252 * 20 18 16 23 23 H 1.48499 * 109.46742 * 330.00303 * 20 18 16 24 24 N 1.31418 * 105.22388 * 359.77118 * 10 9 8 25 25 C 1.37990 * 119.93483 * 179.74784 * 2 1 3 26 26 H 1.09006 * 109.46671 * 270.25308 * 1 2 3 27 27 H 1.08994 * 109.46913 * 30.25146 * 1 2 3 28 28 H 1.08995 * 109.47320 * 150.25300 * 1 2 3 29 29 H 1.08001 * 119.87791 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.93627 * 179.72160 * 4 3 2 31 31 H 1.08005 * 120.05677 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99852 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.47087 * 299.99945 * 12 11 10 34 34 H 1.08994 * 109.46885 * 59.99766 * 12 11 10 35 35 H 1.09011 * 109.47174 * 60.00175 * 14 13 12 36 36 H 1.08997 * 109.47221 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47295 * 300.00355 * 14 13 12 38 38 H 1.08999 * 109.47063 * 60.00325 * 15 13 12 39 39 H 1.09001 * 109.47033 * 179.97438 * 15 13 12 40 40 H 1.08997 * 109.47479 * 300.00271 * 15 13 12 41 41 H 0.96996 * 120.00028 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.06760 * 0.02718 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1988 0.0000 4 6 3.5806 1.2063 -0.0053 5 6 4.2796 0.0160 -0.0055 6 6 3.5894 -1.1944 0.0002 7 6 4.3353 -2.4767 0.0006 8 7 3.7094 -3.6264 0.0054 9 16 4.9247 -4.8141 0.0033 10 6 6.2258 -3.6854 -0.0048 11 7 7.5801 -3.9652 -0.0102 12 6 8.0409 -5.3559 -0.0099 13 6 9.5705 -5.3864 -0.0159 14 6 10.0899 -4.6773 -1.2682 15 6 10.0997 -4.6735 1.2302 16 6 10.0445 -6.8168 -0.0162 17 1 9.3264 -7.6236 -0.0121 18 6 11.3946 -7.0958 -0.0217 19 7 12.2691 -6.1134 -0.0261 20 14 11.9821 -8.8691 -0.0214 21 1 12.1316 -9.3412 -1.4214 22 1 13.2918 -8.9565 0.6731 23 1 10.9898 -9.7191 0.6843 24 7 5.6556 -2.5014 -0.0104 25 6 2.1957 -1.1958 0.0053 26 1 -0.3633 0.0045 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6545 2.1324 0.0004 30 1 4.1144 2.1450 -0.0098 31 1 5.3596 0.0230 -0.0092 32 1 8.2250 -3.2406 -0.0142 33 1 7.6712 -5.8609 0.8825 34 1 7.6635 -5.8638 -0.8974 35 1 9.7471 -3.6425 -1.2684 36 1 11.1796 -4.6986 -1.2723 37 1 9.7128 -5.1851 -2.1560 38 1 9.7297 -5.1786 2.1224 39 1 11.1895 -4.6957 1.2262 40 1 9.7569 -3.6388 1.2300 41 1 13.2190 -6.3097 -0.0296 42 1 1.6557 -2.1311 0.0089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163466539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:04 Heat of formation + Delta-G solvation = 66.401431 kcal Electronic energy + Delta-G solvation = -22933.988646 eV Core-core repulsion = 19619.160835 eV Total energy + Delta-G solvation = -3314.827810 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22692 -38.87589 -37.46216 -34.51509 -32.94134 -32.05889 -30.95233 -30.21710 -27.15083 -25.99649 -25.88421 -25.42276 -24.34166 -22.24058 -21.83609 -19.98583 -19.03147 -18.06324 -16.96893 -16.63805 -15.84748 -15.46783 -15.34895 -15.10772 -14.76906 -14.27950 -14.02430 -13.82378 -13.66812 -13.19411 -13.07303 -12.45241 -12.42910 -12.27813 -11.89608 -11.76701 -11.49182 -11.33125 -11.24188 -11.15863 -11.07099 -10.81213 -10.76938 -10.46063 -10.31813 -9.79167 -9.62644 -9.57456 -9.38783 -8.97820 -8.86674 -8.62030 -8.51089 -7.76062 -6.15650 -4.27537 0.60008 1.26998 1.28937 1.42046 2.00746 2.95828 3.08170 3.20271 3.28218 3.31437 3.82589 4.25935 4.33951 4.67806 4.78689 4.99904 5.11584 5.14115 5.27988 5.34832 5.40472 5.59334 5.64963 5.78494 5.84482 5.88872 5.91192 6.01975 6.19075 6.37113 6.42707 6.44535 6.51077 6.67388 6.73399 6.82326 6.83972 6.88614 7.18383 7.38224 7.48770 7.57510 7.84258 7.94073 8.02789 8.20967 8.72211 9.39489 10.85836 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.033628 B = 0.002490 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.434043 B =11243.650852 C =11879.716757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.107 4.107 4 C -0.125 4.125 5 C -0.076 4.076 6 C -0.016 4.016 7 C 0.346 3.654 8 N -0.513 5.513 9 S 0.180 5.820 10 C 0.352 3.648 11 N -0.645 5.645 12 C 0.122 3.878 13 C 0.061 3.939 14 C -0.135 4.135 15 C -0.134 4.134 16 C -0.512 4.512 17 H 0.060 0.940 18 C 0.068 3.932 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 N -0.595 5.595 25 C -0.078 4.078 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.416 0.584 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.008 0.992 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.089 0.911 40 H 0.008 0.992 41 H 0.262 0.738 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 11.280 0.073 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.126 4.126 4 C -0.144 4.144 5 C -0.097 4.097 6 C -0.021 4.021 7 C 0.059 3.941 8 N -0.348 5.348 9 S 0.314 5.686 10 C -0.027 4.027 11 N -0.282 5.282 12 C 0.000 4.000 13 C 0.061 3.939 14 C -0.192 4.192 15 C -0.192 4.192 16 C -0.550 4.550 17 H 0.078 0.922 18 C -0.134 4.134 19 N -0.520 5.520 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 N -0.332 5.332 25 C -0.098 4.098 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.256 0.744 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.027 0.973 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.729 10.147 0.074 19.566 hybrid contribution 1.267 0.125 -0.009 1.273 sum -15.463 10.272 0.065 18.564 Atomic orbital electron populations 1.20768 0.90927 1.02801 1.02355 1.19816 0.96218 0.92755 1.01024 1.21155 0.94337 0.97461 0.99615 1.21092 0.94134 0.97944 1.01185 1.21325 1.00990 0.90804 0.96542 1.17773 0.92012 0.88546 1.03734 1.21204 0.85545 0.92817 0.94490 1.77550 1.21811 1.00618 1.34793 1.84942 0.93181 1.17669 1.72799 1.25178 0.93350 0.92381 0.91838 1.44759 0.99202 1.11342 1.72856 1.22292 0.99823 0.76884 1.01015 1.18336 0.85538 0.96739 0.93322 1.21876 1.04976 0.95021 0.97354 1.21870 1.04979 0.95020 0.97355 1.20886 0.91927 0.90299 1.51893 0.92213 1.24878 0.96678 0.97337 0.94491 1.69795 1.01717 1.30735 1.49803 0.86529 0.78214 0.84694 0.78209 1.20608 1.21176 1.19816 1.67342 1.08774 1.23523 1.33570 1.21128 0.92619 0.98334 0.97747 0.91186 0.91552 0.91432 0.85965 0.85539 0.84551 0.74364 0.91657 0.91658 0.97314 0.89240 0.95167 0.95166 0.89241 0.97299 0.92768 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.10 -1.00 5.87 -104.67 -0.61 -1.61 16 3 C -0.11 -1.00 9.69 -39.52 -0.38 -1.38 16 4 C -0.13 -1.27 10.03 -39.63 -0.40 -1.66 16 5 C -0.08 -0.96 9.60 -39.25 -0.38 -1.34 16 6 C -0.02 -0.22 5.88 -104.90 -0.62 -0.84 16 7 C 0.35 5.79 7.44 -158.85 -1.18 4.60 16 8 N -0.51 -8.69 11.42 29.64 0.34 -8.35 16 9 S 0.18 2.91 23.14 -107.50 -2.49 0.42 16 10 C 0.35 6.01 8.55 -86.56 -0.74 5.27 16 11 N -0.65 -10.91 5.10 -61.64 -0.31 -11.22 16 12 C 0.12 2.23 4.55 -4.04 -0.02 2.21 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 15 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 16 C -0.51 -12.37 8.01 -34.45 -0.28 -12.64 16 17 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 18 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 19 N -0.88 -22.46 9.35 55.43 0.52 -21.94 16 20 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 N -0.59 -10.28 9.87 -14.52 -0.14 -10.43 16 25 C -0.08 -0.97 9.25 -39.25 -0.36 -1.34 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.07 0.47 8.08 -51.93 -0.42 0.06 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.14 1.75 7.62 -52.48 -0.40 1.35 16 32 H 0.42 6.94 6.29 -40.82 -0.26 6.69 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.01 0.15 6.86 -51.92 -0.36 -0.20 16 36 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 40 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 41 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 42 H 0.13 1.65 7.62 -52.49 -0.40 1.25 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -25.97 356.87 -11.65 -37.62 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.74 Total: 5.33 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -4.18 Total: -11.47 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.40 Total: -51.95 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.49 Total: 0.42 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -25.97 -11.65 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163466539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.019 kcal (2) G-P(sol) polarization free energy of solvation -25.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds