Wall clock time and date at job start Tue Mar 31 2020 11:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38340 * 119.93960 * 2 1 4 4 C 1.38309 * 120.24854 * 180.25329 * 3 2 1 5 5 C 1.38033 * 120.11786 * 359.75429 * 4 3 2 6 6 C 1.39337 * 119.88032 * 359.97438 * 5 4 3 7 7 C 1.48352 * 120.12282 * 180.02562 * 6 5 4 8 8 N 1.30899 * 121.24824 * 180.02562 * 7 6 5 9 9 S 1.69928 * 105.77677 * 179.97438 * 8 7 6 10 10 C 1.72253 * 94.71544 * 359.97438 * 9 8 7 11 11 N 1.38293 * 127.38657 * 180.02562 * 10 9 8 12 12 C 1.46501 * 120.00161 * 0.02562 * 11 10 9 13 13 C 1.52999 * 109.47175 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46856 * 299.99977 * 13 12 11 15 15 C 1.52998 * 109.47174 * 59.99628 * 13 12 11 16 16 C 1.50692 * 109.47324 * 180.02562 * 13 12 11 17 17 H 1.08007 * 119.99852 * 359.97438 * 16 13 12 18 18 C 1.37869 * 120.00368 * 179.97438 * 16 13 12 19 19 N 1.31522 * 120.00064 * 0.02562 * 18 16 13 20 20 Si 1.86807 * 120.00375 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46979 * 90.00083 * 20 18 16 22 22 H 1.48502 * 109.47078 * 210.00252 * 20 18 16 23 23 H 1.48499 * 109.46742 * 330.00303 * 20 18 16 24 24 N 1.31418 * 105.22388 * 359.77118 * 10 9 8 25 25 C 1.37990 * 119.93483 * 179.74784 * 2 1 3 26 26 H 1.09006 * 109.46671 * 270.25308 * 1 2 3 27 27 H 1.08994 * 109.46913 * 30.25146 * 1 2 3 28 28 H 1.08995 * 109.47320 * 150.25300 * 1 2 3 29 29 H 1.08001 * 119.87791 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.93627 * 179.72160 * 4 3 2 31 31 H 1.08005 * 120.05677 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99852 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.47087 * 299.99945 * 12 11 10 34 34 H 1.08994 * 109.46885 * 59.99766 * 12 11 10 35 35 H 1.09011 * 109.47174 * 60.00175 * 14 13 12 36 36 H 1.08997 * 109.47221 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47295 * 300.00355 * 14 13 12 38 38 H 1.08999 * 109.47063 * 60.00325 * 15 13 12 39 39 H 1.09001 * 109.47033 * 179.97438 * 15 13 12 40 40 H 1.08997 * 109.47479 * 300.00271 * 15 13 12 41 41 H 0.96996 * 120.00028 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.06760 * 0.02718 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1988 0.0000 4 6 3.5806 1.2063 -0.0053 5 6 4.2796 0.0160 -0.0055 6 6 3.5894 -1.1944 0.0002 7 6 4.3353 -2.4767 0.0006 8 7 3.7094 -3.6264 0.0054 9 16 4.9247 -4.8141 0.0033 10 6 6.2258 -3.6854 -0.0048 11 7 7.5801 -3.9652 -0.0102 12 6 8.0409 -5.3559 -0.0099 13 6 9.5705 -5.3864 -0.0159 14 6 10.0899 -4.6773 -1.2682 15 6 10.0997 -4.6735 1.2302 16 6 10.0445 -6.8168 -0.0162 17 1 9.3264 -7.6236 -0.0121 18 6 11.3946 -7.0958 -0.0217 19 7 12.2691 -6.1134 -0.0261 20 14 11.9821 -8.8691 -0.0214 21 1 12.1316 -9.3412 -1.4214 22 1 13.2918 -8.9565 0.6731 23 1 10.9898 -9.7191 0.6843 24 7 5.6556 -2.5014 -0.0104 25 6 2.1957 -1.1958 0.0053 26 1 -0.3633 0.0045 1.0277 27 1 -0.3633 0.8877 -0.5177 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6545 2.1324 0.0004 30 1 4.1144 2.1450 -0.0098 31 1 5.3596 0.0230 -0.0092 32 1 8.2250 -3.2406 -0.0142 33 1 7.6712 -5.8609 0.8825 34 1 7.6635 -5.8638 -0.8974 35 1 9.7471 -3.6425 -1.2684 36 1 11.1796 -4.6986 -1.2723 37 1 9.7128 -5.1851 -2.1560 38 1 9.7297 -5.1786 2.1224 39 1 11.1895 -4.6957 1.2262 40 1 9.7569 -3.6388 1.2300 41 1 13.2190 -6.3097 -0.0296 42 1 1.6557 -2.1311 0.0089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163466539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:03 Heat of formation + Delta-G solvation = 55.938376 kcal Electronic energy + Delta-G solvation = -22934.442358 eV Core-core repulsion = 19619.160835 eV Total energy + Delta-G solvation = -3315.281522 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39666 -39.87670 -38.97319 -36.05605 -33.80540 -33.46867 -32.28500 -31.43395 -27.96589 -27.61773 -27.52716 -26.98727 -25.65136 -23.40085 -22.69773 -21.33090 -20.46133 -19.41047 -18.39244 -17.68728 -17.46877 -16.72317 -16.67082 -16.28708 -15.93562 -15.68717 -15.27802 -14.85187 -14.68701 -14.54843 -14.13949 -13.99838 -13.51345 -13.22363 -13.12140 -13.03825 -12.94671 -12.78597 -12.63623 -12.56932 -12.40087 -12.18283 -12.13018 -12.03365 -11.92783 -11.48308 -11.32673 -10.77776 -10.74492 -10.68716 -10.39835 -9.79256 -9.59322 -9.04623 -8.03397 -6.19707 -0.54665 -0.04068 0.32435 0.44979 0.73632 1.44691 1.48466 1.55070 1.74551 1.79459 2.46626 2.89986 3.14030 3.21765 3.91997 4.02839 4.06895 4.22743 4.32443 4.36027 4.43595 4.48684 4.60098 4.64786 4.83257 4.85461 4.88771 4.97054 4.99411 5.03632 5.04838 5.13309 5.31054 5.34156 5.49358 5.52505 5.61232 5.61305 5.63827 5.67462 6.03191 6.08062 6.09716 6.21656 6.38427 6.70564 6.85856 7.48985 8.95866 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.033628 B = 0.002490 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.434043 B =11243.650852 C =11879.716757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.097 4.097 4 C -0.121 4.121 5 C -0.089 4.089 6 C -0.048 4.048 7 C 0.341 3.659 8 N -0.528 5.528 9 S 0.191 5.809 10 C 0.345 3.655 11 N -0.642 5.642 12 C 0.137 3.863 13 C 0.056 3.944 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.027 3.973 19 N -0.901 5.901 20 Si 0.946 3.054 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.270 1.270 24 N -0.603 5.603 25 C -0.090 4.090 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.417 0.583 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.259 0.741 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.105 12.874 0.080 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.116 4.116 4 C -0.139 4.139 5 C -0.110 4.110 6 C -0.053 4.053 7 C 0.055 3.945 8 N -0.362 5.362 9 S 0.325 5.675 10 C -0.035 4.035 11 N -0.279 5.279 12 C 0.014 3.986 13 C 0.055 3.945 14 C -0.184 4.184 15 C -0.183 4.183 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.173 4.173 19 N -0.540 5.540 20 Si 0.773 3.227 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.195 1.195 24 N -0.340 5.340 25 C -0.110 4.110 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.175 0.825 30 H 0.172 0.828 31 H 0.145 0.855 32 H 0.258 0.742 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.671 11.743 0.081 22.057 hybrid contribution 1.764 -0.263 -0.011 1.783 sum -16.908 11.480 0.070 20.437 Atomic orbital electron populations 1.20835 0.88762 1.03840 1.03307 1.20183 0.97813 0.92176 0.99639 1.21593 0.94162 0.98512 0.97351 1.21426 0.94767 0.97968 0.99763 1.21373 1.00757 0.91347 0.97509 1.17962 0.92815 0.88067 1.06416 1.21678 0.85472 0.93746 0.93604 1.77538 1.22171 1.00919 1.35607 1.84822 0.92695 1.17262 1.72696 1.25235 0.93361 0.92827 0.92047 1.44508 0.99274 1.10709 1.73450 1.21969 0.97658 0.77653 1.01313 1.18314 0.87505 0.95409 0.93257 1.21729 1.03134 0.96300 0.97187 1.21724 1.03137 0.96300 0.97185 1.21220 0.91998 0.91771 1.51230 0.92403 1.25478 0.97084 1.00040 0.94719 1.69922 1.01605 1.31863 1.50569 0.85738 0.77536 0.81496 0.77912 1.20645 1.21466 1.19504 1.67380 1.09263 1.23728 1.33674 1.21182 0.92012 0.99212 0.98607 0.90173 0.89477 0.91495 0.82451 0.82788 0.85485 0.74228 0.91413 0.91404 0.95237 0.91862 0.95541 0.95523 0.91866 0.95221 0.93107 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 71.24 0.71 -0.58 16 2 C -0.10 -1.76 5.87 -19.90 -0.12 -1.88 16 3 C -0.10 -1.48 9.69 22.31 0.22 -1.26 16 4 C -0.12 -2.13 10.03 22.24 0.22 -1.91 16 5 C -0.09 -2.18 9.60 22.49 0.22 -1.97 16 6 C -0.05 -1.36 5.88 -20.04 -0.12 -1.47 16 7 C 0.34 11.46 7.44 138.22 1.03 12.49 16 8 N -0.53 -17.96 11.42 -60.14 -0.69 -18.65 16 9 S 0.19 6.13 23.14 -56.49 -1.31 4.82 16 10 C 0.35 11.65 8.55 178.93 1.53 13.18 16 11 N -0.64 -21.26 5.10 -348.93 -1.78 -23.04 16 12 C 0.14 4.90 4.55 86.38 0.39 5.30 16 13 C 0.06 2.37 0.50 -52.93 -0.03 2.34 16 14 C -0.13 -5.32 8.08 71.98 0.58 -4.74 16 15 C -0.13 -5.32 8.08 71.98 0.58 -4.74 16 16 C -0.52 -25.27 8.01 25.60 0.21 -25.07 16 17 H 0.06 2.75 7.74 -2.91 -0.02 2.73 16 18 C 0.03 1.33 5.15 84.65 0.44 1.77 16 19 N -0.90 -46.44 9.35 21.45 0.20 -46.24 16 20 Si 0.95 40.48 29.54 68.60 2.03 42.50 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 N -0.60 -20.84 9.87 -199.84 -1.97 -22.81 16 25 C -0.09 -2.18 9.25 22.49 0.21 -1.97 16 26 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.09 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 29 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.13 3.26 7.62 -2.91 -0.02 3.23 16 32 H 0.42 13.54 6.29 -92.71 -0.58 12.96 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.03 1.08 6.86 -2.38 -0.02 1.07 16 36 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 40 H 0.03 1.09 6.86 -2.39 -0.02 1.07 16 41 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 42 H 0.12 3.13 7.62 -2.91 -0.02 3.11 16 Total: -1.00 -55.82 356.87 3.01 -52.81 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.46 Total: 21.13 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 6.07 Total: -10.53 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.24 Total: -110.74 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.31 Total: 4.82 kcal Total: -55.82 3.01 -52.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163466539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.751 kcal (2) G-P(sol) polarization free energy of solvation -55.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds