Wall clock time and date at job start Tue Mar 31 2020 11:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32369 * 124.62382 * 2 1 4 4 C 1.40382 * 115.77742 * 180.02562 * 3 2 1 5 5 N 1.35303 * 129.71622 * 179.71381 * 4 3 2 6 6 C 1.30892 * 121.14245 * 179.78389 * 5 4 3 7 7 N 1.32143 * 122.57061 * 0.53688 * 6 5 4 8 8 C 1.32733 * 120.76942 * 359.72960 * 7 6 5 9 9 N 1.38535 * 120.56227 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99842 * 236.02646 * 9 8 7 11 11 C 1.50700 * 109.47209 * 58.73620 * 10 9 8 12 12 H 1.07999 * 119.99807 * 4.83792 * 11 10 9 13 13 C 1.37875 * 119.99939 * 184.83127 * 11 10 9 14 14 N 1.31516 * 120.00298 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00094 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46669 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47119 * 120.00091 * 15 13 11 18 18 H 1.48496 * 109.47214 * 240.00465 * 15 13 11 19 19 C 1.46897 * 111.00120 * 359.97438 * 9 8 7 20 20 C 1.54265 * 110.03563 * 184.12086 * 19 9 8 21 21 C 1.54886 * 104.19766 * 217.10551 * 20 19 9 22 22 C 1.54884 * 102.74913 * 37.94321 * 21 20 19 23 23 C 1.53875 * 110.03172 * 66.95256 * 19 9 8 24 24 C 1.39661 * 112.50238 * 359.97438 * 4 3 2 25 25 S 1.75573 * 124.62532 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47274 * 299.97339 * 1 2 3 28 28 H 1.09000 * 109.47501 * 59.97833 * 1 2 3 29 29 H 1.07997 * 122.11178 * 0.02562 * 3 2 1 30 30 H 1.07998 * 118.71673 * 180.29543 * 6 5 4 31 31 H 1.09009 * 109.46950 * 178.73282 * 10 9 8 32 32 H 1.08998 * 109.47163 * 298.73167 * 10 9 8 33 33 H 0.97003 * 120.00463 * 180.02562 * 14 13 11 34 34 H 1.09003 * 110.01898 * 305.56608 * 19 9 8 35 35 H 1.08996 * 110.48818 * 335.79021 * 20 19 9 36 36 H 1.08999 * 110.48504 * 98.42807 * 20 19 9 37 37 H 1.08996 * 110.75898 * 279.62994 * 21 20 19 38 38 H 1.08998 * 110.91147 * 156.32840 * 21 20 19 39 39 H 1.08994 * 110.49313 * 203.37742 * 22 21 20 40 40 H 1.09002 * 110.59955 * 80.78742 * 22 21 20 41 41 H 1.08997 * 110.03935 * 238.57020 * 23 19 9 42 42 H 1.09003 * 110.03318 * 359.95680 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2591 1.0893 0.0000 4 6 3.6462 0.8734 -0.0006 5 7 4.6606 1.7688 -0.0059 6 6 5.9094 1.3770 -0.0013 7 7 6.2548 0.1015 -0.0017 8 6 5.3315 -0.8521 -0.0015 9 7 5.6984 -2.1879 -0.0014 10 6 5.0987 -2.8987 -1.1386 11 6 5.5401 -2.2503 -2.4254 12 1 6.2607 -1.4461 -2.4055 13 6 5.0241 -2.6839 -3.6282 14 7 4.1463 -3.6630 -3.6525 15 14 5.5706 -1.8799 -5.2233 16 1 6.5575 -0.8108 -4.9258 17 1 6.1963 -2.8998 -6.1027 18 1 4.3929 -1.2901 -5.9092 19 6 7.1603 -2.3323 -0.0021 20 6 7.5441 -3.8229 -0.1060 21 6 8.7925 -3.9579 0.8007 22 6 8.4576 -3.0182 1.9855 23 6 7.7411 -1.8206 1.3278 24 6 3.9759 -0.4838 -0.0005 25 16 2.5046 -1.4448 0.0006 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5135 0.8903 28 1 -0.3634 0.5142 -0.8898 29 1 1.8325 2.0814 0.0004 30 1 6.6881 2.1253 -0.0009 31 1 5.4211 -3.9399 -1.1272 32 1 4.0123 -2.8538 -1.0631 33 1 3.7835 -3.9683 -4.4987 34 1 7.5898 -1.7764 -0.8355 35 1 6.7343 -4.4520 0.2634 36 1 7.7905 -4.0824 -1.1356 37 1 9.6873 -3.6181 0.2793 38 1 8.9142 -4.9849 1.1448 39 1 9.3706 -2.6904 2.4824 40 1 7.7960 -3.5159 2.6946 41 1 8.4531 -1.0170 1.1398 42 1 6.9383 -1.4644 1.9734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:14 Heat of formation + Delta-G solvation = 51.608543 kcal Electronic energy + Delta-G solvation = -25086.537140 eV Core-core repulsion = 21771.067862 eV Total energy + Delta-G solvation = -3315.469278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.17158 -40.01750 -37.62071 -36.74108 -34.80060 -33.42711 -32.27609 -29.95837 -29.24831 -28.78776 -27.29116 -25.86206 -24.73494 -23.00499 -21.94586 -21.35262 -20.52512 -19.00874 -18.64380 -18.24563 -17.39763 -17.20669 -16.50211 -16.20997 -16.01596 -15.96529 -15.13995 -14.94903 -14.67048 -14.56925 -14.32747 -14.16961 -13.71180 -13.49420 -13.25803 -13.20914 -12.81174 -12.64696 -12.53179 -12.44733 -12.24505 -12.02149 -11.94080 -11.84371 -11.73009 -11.63311 -11.46754 -11.34656 -11.31630 -10.66502 -10.22794 -9.97392 -9.64200 -8.76757 -8.28089 -6.42304 -0.50729 0.04066 0.48576 0.97350 1.24781 1.26171 1.29174 1.38689 2.28098 2.58817 2.96693 3.02625 3.10599 3.38543 3.68800 3.83985 3.88957 3.93623 4.04902 4.17413 4.44810 4.59354 4.61030 4.65928 4.68750 4.77439 4.82298 4.84736 4.89323 4.99353 5.03131 5.07117 5.13627 5.18751 5.21978 5.25591 5.30162 5.37888 5.45797 5.52670 5.60917 5.71586 5.88863 6.19797 6.27446 6.67886 7.23294 7.27359 8.76586 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.007077 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.036546 B = 3955.471455 C = 5354.922845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.124 4.124 3 C -0.158 4.158 4 C 0.164 3.836 5 N -0.545 5.545 6 C 0.311 3.689 7 N -0.572 5.572 8 C 0.438 3.562 9 N -0.477 5.477 10 C 0.201 3.799 11 C -0.553 4.553 12 H 0.042 0.958 13 C 0.033 3.967 14 N -0.905 5.905 15 Si 0.940 3.060 16 H -0.281 1.281 17 H -0.269 1.269 18 H -0.278 1.278 19 C 0.100 3.900 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.092 4.092 24 C -0.296 4.296 25 S 0.153 5.847 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.171 0.829 30 H 0.225 0.775 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.268 0.732 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 4.177 9.738 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.245 4.245 3 C -0.188 4.188 4 C 0.025 3.975 5 N -0.264 5.264 6 C 0.018 3.982 7 N -0.295 5.295 8 C 0.189 3.811 9 N -0.193 5.193 10 C 0.077 3.923 11 C -0.592 4.592 12 H 0.060 0.940 13 C -0.169 4.169 14 N -0.543 5.543 15 Si 0.766 3.234 16 H -0.206 1.206 17 H -0.194 1.194 18 H -0.204 1.204 19 C -0.007 4.007 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.130 4.130 24 C -0.419 4.419 25 S 0.415 5.585 26 H 0.097 0.903 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.189 0.811 30 H 0.241 0.759 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.275 2.951 10.040 10.542 hybrid contribution 0.298 1.479 -1.915 2.438 sum -0.977 4.430 8.125 9.306 Atomic orbital electron populations 1.20627 0.83787 1.04550 1.05235 1.25165 1.02565 0.95596 1.01152 1.19527 0.88732 1.01475 1.09064 1.19472 0.95233 0.87335 0.95509 1.68409 1.00368 1.37667 1.19938 1.25127 0.92354 0.91241 0.89476 1.68654 1.36246 1.02118 1.22481 1.19488 0.87053 0.90562 0.84041 1.59490 1.12913 1.05733 1.41186 1.19851 0.95153 0.93700 0.83607 1.21678 1.25766 1.18942 0.92843 0.94015 1.25463 0.94686 0.95250 1.01501 1.69987 1.29404 1.27466 1.27439 0.85777 0.78245 0.78739 0.80623 1.20597 1.19369 1.20389 1.22121 0.83680 0.96806 0.98058 1.22401 0.98664 0.94353 0.99805 1.22426 0.96413 1.00412 0.95667 1.22338 1.00277 0.95297 0.97306 1.21979 0.98753 0.98152 0.94153 1.23937 0.99365 1.00262 1.18300 1.84425 0.92498 1.06965 1.74568 0.90256 0.87382 0.88453 0.81135 0.75866 0.94347 0.94229 0.92225 0.94284 0.91918 0.92986 0.90875 0.89843 0.89779 0.91706 0.91354 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.34 71.24 0.74 -0.83 16 2 C -0.12 -3.67 6.43 24.59 0.16 -3.51 16 3 C -0.16 -5.06 10.00 21.70 0.22 -4.85 16 4 C 0.16 6.54 7.02 39.47 0.28 6.82 16 5 N -0.55 -21.18 10.50 -194.87 -2.05 -23.23 16 6 C 0.31 11.48 12.23 181.05 2.21 13.69 16 7 N -0.57 -23.72 7.82 -197.46 -1.54 -25.27 16 8 C 0.44 19.53 4.60 133.45 0.61 20.15 16 9 N -0.48 -21.19 4.53 -677.03 -3.07 -24.26 16 10 C 0.20 10.09 4.50 85.56 0.38 10.48 16 11 C -0.55 -30.35 7.88 25.60 0.20 -30.15 16 12 H 0.04 2.42 6.56 -2.91 -0.02 2.40 16 13 C 0.03 1.81 5.46 84.65 0.46 2.27 16 14 N -0.90 -50.84 13.29 21.45 0.28 -50.56 16 15 Si 0.94 44.38 29.54 68.60 2.03 46.41 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 C 0.10 3.99 1.84 45.64 0.08 4.07 16 20 C -0.11 -4.09 5.06 31.67 0.16 -3.93 16 21 C -0.11 -2.95 6.91 31.88 0.22 -2.73 16 22 C -0.11 -2.96 6.83 31.67 0.22 -2.74 16 23 C -0.09 -3.04 5.19 31.32 0.16 -2.88 16 24 C -0.30 -12.75 6.06 23.16 0.14 -12.61 16 25 S 0.15 5.75 20.66 -56.49 -1.17 4.58 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.11 1.47 8.14 -2.38 -0.02 1.46 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.17 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.23 6.14 8.06 -2.91 -0.02 6.11 16 31 H 0.04 2.02 6.25 -2.38 -0.01 2.00 16 32 H 0.04 2.09 5.14 -5.11 -0.03 2.06 16 33 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.04 1.78 6.68 -2.39 -0.02 1.77 16 35 H 0.06 2.33 7.23 -2.39 -0.02 2.32 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.04 1.53 7.39 -2.39 -0.02 1.52 16 Total: -1.00 -65.62 344.96 1.75 -63.87 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.02 Total: 15.20 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.25 Total: -6.75 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.38 Total: -123.31 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.17 Total: 4.58 kcal Total: -65.62 1.75 -63.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.474 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds