Wall clock time and date at job start Tue Mar 31 2020 11:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38297 * 119.96817 * 2 1 4 4 C 1.38263 * 120.14517 * 180.27712 * 3 2 1 5 5 C 1.38128 * 120.06987 * 359.48385 * 4 3 2 6 6 C 1.38860 * 119.92880 * 0.26054 * 5 4 3 7 7 N 1.39890 * 120.07328 * 179.97438 * 6 5 4 8 8 C 1.34771 * 120.00051 * 312.67714 * 7 6 5 9 9 S 1.71202 * 120.00161 * 4.26024 * 8 7 6 10 10 N 1.34777 * 119.99929 * 184.27122 * 8 7 6 11 11 C 1.46506 * 119.99964 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47161 * 89.99503 * 11 10 8 13 13 H 1.08000 * 119.99893 * 0.02562 * 12 11 10 14 14 C 1.37871 * 119.99635 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00733 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99727 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46989 * 60.00432 * 16 14 12 18 18 H 1.48498 * 109.46870 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47439 * 300.00357 * 16 14 12 20 20 C 1.46497 * 120.00187 * 359.97438 * 10 8 7 21 21 C 1.52996 * 109.47054 * 90.00143 * 20 10 8 22 22 C 1.47198 * 109.47325 * 180.02562 * 21 20 10 23 23 N 7.97757 * 105.45553 * 173.93812 * 2 1 3 24 24 C 1.38093 * 119.96063 * 179.76461 * 2 1 3 25 25 C 1.50703 * 120.03763 * 359.97438 * 24 2 1 26 26 H 1.08997 * 109.47175 * 270.23889 * 1 2 3 27 27 H 1.09003 * 109.46204 * 30.23600 * 1 2 3 28 28 H 1.08994 * 109.46803 * 150.23394 * 1 2 3 29 29 H 1.08004 * 119.92978 * 0.03827 * 3 2 1 30 30 H 1.08003 * 119.96531 * 179.76578 * 4 3 2 31 31 H 1.07998 * 120.03493 * 180.27454 * 5 4 3 32 32 H 0.97002 * 119.99972 * 132.66618 * 7 6 5 33 33 H 1.09001 * 109.46974 * 209.99801 * 11 10 8 34 34 H 1.09003 * 109.46653 * 329.99779 * 11 10 8 35 35 H 0.96999 * 120.00549 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47461 * 210.00596 * 20 10 8 37 37 H 1.08999 * 109.46801 * 330.00737 * 20 10 8 38 38 H 1.08998 * 109.47357 * 300.00517 * 21 20 10 39 39 H 1.09005 * 109.47258 * 60.00476 * 21 20 10 40 40 H 1.08994 * 109.47030 * 269.98102 * 25 24 2 41 41 H 1.09003 * 109.46490 * 29.97891 * 25 24 2 42 42 H 1.08997 * 109.46998 * 149.97594 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5805 1.2023 -0.0058 5 6 4.2763 0.0091 -0.0008 6 6 3.5857 -1.1956 0.0045 7 7 4.2874 -2.4058 0.0090 8 6 5.3093 -2.5954 -0.8489 9 16 5.8195 -1.3181 -1.8683 10 7 5.9295 -3.7907 -0.9045 11 6 7.0400 -3.9971 -1.8375 12 6 8.3379 -3.6382 -1.1609 13 1 8.3358 -3.2915 -0.1381 14 6 9.5280 -3.7535 -1.8474 15 7 9.5307 -4.1761 -3.0928 16 14 11.1368 -3.3080 -1.0089 17 1 11.3271 -4.1688 0.1860 18 1 12.2624 -3.5184 -1.9543 19 1 11.0997 -1.8833 -0.5918 20 6 5.4932 -4.8836 -0.0320 21 6 4.4103 -5.7002 -0.7400 22 6 3.9714 -6.7980 0.1368 23 7 3.6330 -7.6461 0.8120 24 6 2.1967 -1.1964 0.0049 25 6 1.4432 -2.5015 0.0109 26 1 -0.3633 0.0043 1.0276 27 1 -0.3632 0.8879 -0.5175 28 1 -0.3633 -0.8920 -0.5102 29 1 1.6562 2.1325 0.0006 30 1 4.1170 2.1397 -0.0096 31 1 5.3563 0.0132 -0.0009 32 1 4.0385 -3.1084 0.6298 33 1 7.0672 -5.0426 -2.1445 34 1 6.9003 -3.3645 -2.7142 35 1 10.3679 -4.2568 -3.5758 36 1 6.3426 -5.5274 0.1965 37 1 5.0906 -4.4713 0.8932 38 1 3.5609 -5.0564 -0.9685 39 1 4.8128 -6.1126 -1.6653 40 1 1.2622 -2.8118 1.0399 41 1 0.4904 -2.3731 -0.5029 42 1 2.0318 -3.2632 -0.5003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196411245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:02 Heat of formation + Delta-G solvation = 59.232816 kcal Electronic energy + Delta-G solvation = -23856.189809 eV Core-core repulsion = 20541.051144 eV Total energy + Delta-G solvation = -3315.138665 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46532 -39.94661 -37.82947 -36.76708 -34.78947 -34.20549 -32.99561 -31.79195 -29.27139 -28.11055 -27.23303 -26.53798 -25.32104 -22.76068 -22.55267 -21.35946 -19.49950 -18.83947 -18.67766 -18.23682 -17.01850 -16.70398 -16.44621 -16.37565 -16.13571 -15.52163 -15.34272 -15.10438 -14.51434 -14.45414 -14.01388 -13.81971 -13.78627 -13.75723 -13.55645 -13.40585 -13.31891 -13.07143 -12.85477 -12.65354 -12.57396 -12.52114 -12.27906 -12.12546 -12.05895 -11.92212 -11.81769 -11.60815 -10.54996 -10.37415 -9.45086 -9.19333 -8.71755 -8.15225 -7.94756 -6.24100 0.10392 0.59006 0.76829 1.04879 1.40952 1.45974 1.50458 1.60761 1.72968 1.76901 2.29227 2.45558 2.90816 3.01670 3.19663 3.66769 3.79031 3.96815 4.02342 4.20572 4.24250 4.33682 4.42313 4.53483 4.60588 4.75552 4.79401 4.83187 4.90272 4.96671 5.00714 5.06810 5.13257 5.27590 5.34852 5.45599 5.51978 5.65561 5.74167 5.78988 5.82883 5.93090 6.08549 6.23660 6.45746 6.49376 6.80289 7.42088 8.91983 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.004622 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.791837 B = 6056.809567 C = 7991.685594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.114 4.114 4 C -0.132 4.132 5 C -0.089 4.089 6 C 0.116 3.884 7 N -0.621 5.621 8 C 0.581 3.419 9 S -0.723 6.723 10 N -0.532 5.532 11 C 0.254 3.746 12 C -0.526 4.526 13 H 0.050 0.950 14 C 0.023 3.977 15 N -0.920 5.920 16 Si 0.951 3.049 17 H -0.264 1.264 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.091 3.909 21 C -0.034 4.034 22 C 0.243 3.757 23 N -0.475 5.475 24 C -0.092 4.092 25 C -0.118 4.118 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.265 0.735 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.511 2.595 8.873 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.132 4.132 4 C -0.152 4.152 5 C -0.112 4.112 6 C 0.023 3.977 7 N -0.251 5.251 8 C 0.220 3.780 9 S -0.590 6.590 10 N -0.235 5.235 11 C 0.134 3.866 12 C -0.565 4.565 13 H 0.068 0.932 14 C -0.177 4.177 15 N -0.559 5.559 16 Si 0.777 3.223 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.211 1.211 20 C -0.035 4.035 21 C -0.076 4.076 22 C -0.075 4.075 23 N -0.152 5.152 24 C -0.095 4.095 25 C -0.174 4.174 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.260 0.740 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.473 1.930 9.033 21.552 hybrid contribution 1.591 -0.187 0.444 1.662 sum -17.882 1.743 9.477 20.312 Atomic orbital electron populations 1.20854 0.88750 1.03701 1.03222 1.19858 0.97452 0.91513 1.00831 1.21311 0.93554 0.98674 0.99688 1.21090 0.94964 0.97335 1.01784 1.21357 1.00661 0.92354 0.96811 1.17320 0.90463 0.83903 1.06047 1.42069 1.30281 1.17521 1.35252 1.21691 0.82442 0.88594 0.85267 1.93439 1.78714 1.35129 1.51722 1.47535 1.31151 1.07340 1.37439 1.19493 0.81052 0.97668 0.88430 1.21341 0.91671 1.44591 0.98864 0.93221 1.25487 1.01911 0.95074 0.95270 1.69984 1.27982 1.47365 1.10581 0.85725 0.79556 0.78414 0.78623 1.18884 1.20914 1.21075 1.21944 0.99531 0.89211 0.92848 1.19698 1.00181 0.90976 0.96728 1.28825 0.92157 0.93537 0.92948 1.81277 1.10639 1.12137 1.11177 1.19810 0.90466 0.97369 1.01806 1.20911 1.00559 0.92455 1.03518 0.89984 0.90751 0.90410 0.83788 0.85329 0.87053 0.74010 0.93413 0.93799 0.92644 0.87150 0.87876 0.85118 0.85177 0.89334 0.89202 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.60 71.24 0.68 -0.61 16 2 C -0.10 -1.84 5.88 -19.88 -0.12 -1.96 16 3 C -0.11 -2.39 9.70 22.29 0.22 -2.17 16 4 C -0.13 -3.48 10.04 22.25 0.22 -3.26 16 5 C -0.09 -2.84 7.88 22.39 0.18 -2.67 16 6 C 0.12 3.17 5.86 38.16 0.22 3.39 16 7 N -0.62 -16.03 4.30 -189.99 -0.82 -16.84 16 8 C 0.58 20.40 7.56 179.06 1.35 21.76 16 9 S -0.72 -34.29 24.40 -56.49 -1.38 -35.67 16 10 N -0.53 -17.56 2.46 -714.17 -1.75 -19.32 16 11 C 0.25 11.41 4.92 85.63 0.42 11.83 16 12 C -0.53 -27.04 9.39 25.60 0.24 -26.80 16 13 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 14 C 0.02 1.21 5.46 84.65 0.46 1.68 16 15 N -0.92 -52.05 13.29 21.45 0.28 -51.77 16 16 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 20 C 0.09 1.92 5.17 86.38 0.45 2.37 16 21 C -0.03 -0.52 6.03 28.79 0.17 -0.35 16 22 C 0.24 4.48 15.43 89.45 1.38 5.86 16 23 N -0.47 -11.63 18.53 20.00 0.37 -11.26 16 24 C -0.09 -1.94 5.90 -19.74 -0.12 -2.06 16 25 C -0.12 -1.64 9.19 71.24 0.65 -0.98 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 28 H 0.08 0.79 5.94 -2.39 -0.01 0.78 16 29 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.11 4.31 6.31 -4.64 -0.03 4.28 16 32 H 0.42 7.48 6.16 -92.71 -0.57 6.91 16 33 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 34 H 0.04 2.36 6.58 -2.39 -0.02 2.34 16 35 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.11 2.49 8.07 -2.39 -0.02 2.47 16 37 H 0.10 1.60 6.30 -2.39 -0.02 1.58 16 38 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.09 1.00 5.94 -2.39 -0.01 0.99 16 42 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16 Total: -1.00 -74.94 365.48 5.62 -69.32 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.47 Total: 14.04 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.42 Total: 6.02 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -1.92 Total: -99.19 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -34.29 SS G_CDS: -1.38 Total: -35.67 kcal Total: -74.94 5.62 -69.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196411245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.552 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds