Wall clock time and date at job start Tue Mar 31 2020 11:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38108 * 120.03897 * 2 1 4 4 C 1.38286 * 120.07471 * 179.72665 * 3 2 1 5 5 C 1.38287 * 120.14012 * 0.25269 * 4 3 2 6 6 C 1.38106 * 120.07147 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.03579 * 180.02562 * 6 5 4 8 8 C 1.38880 * 119.93052 * 359.97438 * 6 5 4 9 9 N 1.39891 * 120.07394 * 180.02562 * 8 6 5 10 10 C 1.34768 * 120.00216 * 237.38937 * 9 8 6 11 11 S 1.71199 * 120.00202 * 4.74078 * 10 9 8 12 12 N 1.34778 * 119.99854 * 184.74262 * 10 9 8 13 13 C 1.46500 * 119.99960 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47354 * 90.00097 * 13 12 10 15 15 H 1.08000 * 119.99794 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00090 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00185 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99992 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47015 * 89.99981 * 18 16 14 20 20 H 1.48495 * 109.47659 * 209.99988 * 18 16 14 21 21 H 1.48506 * 109.47288 * 330.00253 * 18 16 14 22 22 C 1.46503 * 120.00274 * 359.97438 * 12 10 9 23 23 C 1.52994 * 109.47193 * 90.00088 * 22 12 10 24 24 C 1.47203 * 109.47332 * 180.02562 * 23 22 12 25 25 N 7.18842 * 72.27186 * 151.36661 * 2 1 3 26 26 H 1.09003 * 109.46968 * 40.14783 * 1 2 3 27 27 H 1.08998 * 109.47159 * 160.15523 * 1 2 3 28 28 H 1.08996 * 109.46956 * 280.15786 * 1 2 3 29 29 H 1.08004 * 119.96696 * 359.97438 * 3 2 1 30 30 H 1.07995 * 119.92801 * 180.22804 * 4 3 2 31 31 H 1.07999 * 119.96081 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.46948 * 89.99878 * 7 6 5 33 33 H 1.09002 * 109.47217 * 210.00027 * 7 6 5 34 34 H 1.09003 * 109.46634 * 329.99653 * 7 6 5 35 35 H 0.97003 * 119.99361 * 57.39152 * 9 8 6 36 36 H 1.09009 * 109.46935 * 209.99865 * 13 12 10 37 37 H 1.09005 * 109.47512 * 329.99885 * 13 12 10 38 38 H 0.96997 * 120.00493 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47034 * 210.00094 * 22 12 10 40 40 H 1.09002 * 109.46694 * 329.99938 * 22 12 10 41 41 H 1.09005 * 109.47073 * 300.00238 * 23 22 12 42 42 H 1.09003 * 109.47499 * 59.99747 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1956 0.0000 4 6 3.5812 1.1964 0.0057 5 6 4.2763 0.0010 0.0062 6 6 3.5910 -1.1980 0.0004 7 6 4.3493 -2.5004 0.0015 8 6 2.2022 -1.2023 -0.0054 9 7 1.5050 -2.4151 -0.0107 10 6 0.6279 -2.6838 -0.9980 11 16 0.4556 -1.5968 -2.3093 12 7 -0.1137 -3.8083 -0.9529 13 6 -1.0676 -4.1002 -2.0258 14 6 -0.3813 -4.8972 -3.1052 15 1 0.6613 -5.1596 -3.0024 16 6 -1.0841 -5.2903 -4.2243 17 7 -2.3535 -4.9703 -4.3497 18 14 -0.2332 -6.2775 -5.5625 19 1 -0.3710 -7.7273 -5.2715 20 1 -0.8585 -5.9745 -6.8748 21 1 1.2065 -5.9159 -5.6049 22 6 0.0340 -4.7388 0.1690 23 6 -0.9434 -4.3553 1.2818 24 6 -0.7946 -5.2898 2.4093 25 7 -0.6819 -6.0097 3.2811 26 1 -0.3633 0.7856 -0.6626 27 1 -0.3633 -0.9666 -0.3489 28 1 -0.3633 0.1812 1.0115 29 1 1.6584 2.1310 -0.0004 30 1 4.1194 2.1327 0.0094 31 1 5.3563 0.0050 0.0110 32 1 4.5271 -2.8164 1.0293 33 1 3.7656 -3.2612 -0.5168 34 1 5.3037 -2.3654 -0.5075 35 1 1.6528 -3.0626 0.6963 36 1 -1.9016 -4.6757 -1.6239 37 1 -1.4398 -3.1655 -2.4454 38 1 -2.8480 -5.2472 -5.1369 39 1 -0.1802 -5.7526 -0.1692 40 1 1.0545 -4.6905 0.5491 41 1 -0.7293 -3.3414 1.6200 42 1 -1.9639 -4.4035 0.9017 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198350519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:02 Heat of formation + Delta-G solvation = 83.070528 kcal Electronic energy + Delta-G solvation = -24234.580471 eV Core-core repulsion = 20920.475487 eV Total energy + Delta-G solvation = -3314.104984 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44552 -38.66260 -36.80046 -35.32361 -33.52158 -32.94550 -31.75427 -30.57497 -27.90301 -26.69773 -26.61292 -25.24084 -23.48866 -21.60776 -21.17762 -20.51742 -18.30862 -17.83750 -17.36638 -16.54704 -15.90911 -15.66830 -15.16623 -14.88179 -14.67035 -14.26029 -14.03960 -13.87231 -13.61307 -13.21976 -13.04139 -12.84793 -12.73924 -12.63962 -12.57698 -12.23923 -12.04444 -11.64391 -11.49645 -11.40881 -11.23789 -11.15325 -11.01199 -10.79903 -10.74713 -10.30582 -10.20809 -9.87931 -8.90758 -8.50863 -8.42948 -8.07017 -6.89299 -6.33277 -6.11741 -4.15592 1.28937 1.50955 1.98820 2.43521 2.60305 2.66424 3.21607 3.27802 3.36491 3.40446 3.46753 3.82444 4.00826 4.40379 4.61126 4.73371 4.84718 4.90290 5.07548 5.08954 5.25017 5.31043 5.44254 5.46532 5.51328 5.59774 5.63381 5.68778 5.87182 5.93999 5.94813 6.13607 6.22461 6.48987 6.53754 6.59906 6.66265 6.75006 7.03256 7.11625 7.35503 7.36533 7.45109 7.79415 7.82768 8.05911 8.82673 9.48138 10.96550 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.005084 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.013729 B = 5506.645793 C = 6840.490328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.032 4.032 3 C -0.121 4.121 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.084 4.084 7 C -0.115 4.115 8 C 0.149 3.851 9 N -0.655 5.655 10 C 0.551 3.449 11 S -0.607 6.607 12 N -0.538 5.538 13 C 0.237 3.763 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.070 3.930 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.282 1.282 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.098 3.902 23 C -0.048 4.048 24 C 0.213 3.787 25 N -0.434 5.434 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.395 0.605 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.244 7.299 13.133 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.035 4.035 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.087 4.087 7 C -0.171 4.171 8 C 0.056 3.944 9 N -0.286 5.286 10 C 0.196 3.804 11 S -0.475 6.475 12 N -0.244 5.244 13 C 0.119 3.881 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.133 4.133 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.031 4.031 23 C -0.090 4.090 24 C -0.105 4.105 25 N -0.111 5.111 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.026 6.801 13.390 17.029 hybrid contribution 0.611 -1.201 -0.279 1.376 sum 8.638 5.600 13.111 16.669 Atomic orbital electron populations 1.21268 0.90665 1.05682 0.99993 1.19825 0.96615 0.91496 0.95515 1.20824 0.94006 0.97121 1.02091 1.21056 0.94254 0.97729 1.00118 1.20729 0.99347 0.91440 1.02777 1.19772 0.91928 0.95960 1.01049 1.20737 1.00128 0.94504 1.01767 1.16894 0.89406 0.84077 1.04037 1.42328 1.41461 1.18859 1.25951 1.22365 0.81583 0.87759 0.88705 1.93283 1.81560 1.44882 1.27776 1.47851 1.37485 1.16315 1.22702 1.20049 0.85547 0.99938 0.82580 1.21103 0.97074 1.33993 1.03898 0.92536 1.24790 0.94804 0.96032 0.97681 1.69895 1.07983 1.45633 1.29213 0.86505 0.79932 0.79677 0.81383 1.20844 1.21003 1.19849 1.21628 0.97982 0.96946 0.86498 1.19784 1.04663 0.95831 0.88681 1.28914 0.93402 0.94021 0.94180 1.81249 1.08565 1.10011 1.11262 0.90833 0.89770 0.93108 0.85975 0.86259 0.86140 0.91511 0.91580 0.91207 0.76508 0.94124 0.90054 0.92578 0.87067 0.90832 0.87432 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.52 36.01 0.31 -1.36 16 2 C -0.03 -0.45 5.01 -104.43 -0.52 -0.97 16 3 C -0.12 -1.50 9.73 -39.61 -0.39 -1.89 16 4 C -0.11 -1.26 10.04 -39.55 -0.40 -1.66 16 5 C -0.12 -1.42 9.70 -39.61 -0.38 -1.80 16 6 C -0.08 -1.07 5.90 -104.43 -0.62 -1.68 16 7 C -0.11 -1.22 9.75 36.01 0.35 -0.87 16 8 C 0.15 2.08 5.38 -83.70 -0.45 1.63 16 9 N -0.65 -8.79 3.87 -11.40 -0.04 -8.83 16 10 C 0.55 9.50 5.86 -86.92 -0.51 8.99 16 11 S -0.61 -13.52 23.89 -107.50 -2.57 -16.08 16 12 N -0.54 -8.95 2.46 -177.08 -0.43 -9.38 16 13 C 0.24 5.19 4.92 -5.19 -0.03 5.16 16 14 C -0.52 -13.24 9.39 -34.44 -0.32 -13.56 16 15 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 16 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 17 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.10 1.15 5.17 -4.04 -0.02 1.13 16 23 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 24 C 0.21 2.29 15.43 -20.75 -0.32 1.97 16 25 N -0.43 -5.86 18.54 42.16 0.78 -5.08 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.36 3.91 -37.78 -0.15 1.21 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.80 7.46 -51.93 -0.39 0.41 16 34 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.40 4.12 6.50 -40.82 -0.27 3.85 16 36 H 0.04 0.88 8.07 -51.92 -0.42 0.46 16 37 H 0.08 2.06 6.58 -51.93 -0.34 1.72 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.11 1.38 8.07 -51.93 -0.42 0.96 16 40 H 0.07 0.70 6.30 -51.93 -0.33 0.37 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -32.49 365.17 -10.27 -42.77 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.65 Total: 2.71 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.57 Total: -3.77 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 1.04 Total: -47.17 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -13.52 SS G_CDS: -2.57 Total: -16.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.49 -10.27 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198350519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.838 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds