Wall clock time and date at job start Tue Mar 31 2020 11:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38283 * 119.96543 * 2 1 4 4 C 1.38289 * 120.14405 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.96129 * 180.02562 * 4 3 2 6 6 C 1.38107 * 120.07120 * 0.02562 * 4 3 2 7 7 C 1.38891 * 119.92770 * 0.02562 * 6 4 3 8 8 N 1.39883 * 120.06654 * 179.72442 * 7 6 4 9 9 C 1.34775 * 119.99830 * 134.86034 * 8 7 6 10 10 S 1.71204 * 120.00018 * 4.15640 * 9 8 7 11 11 N 1.34776 * 120.00142 * 184.15260 * 9 8 7 12 12 C 1.46504 * 120.00171 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47251 * 90.00284 * 12 11 9 14 14 H 1.08001 * 119.99359 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00216 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99903 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00411 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46574 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47104 * 119.99881 * 17 15 13 20 20 H 1.48497 * 109.47268 * 240.00163 * 17 15 13 21 21 C 1.46505 * 120.00171 * 0.02562 * 11 9 8 22 22 C 1.53004 * 109.47246 * 89.99473 * 21 11 9 23 23 C 1.47196 * 109.46850 * 180.02562 * 22 21 11 24 24 N 8.88953 * 149.68732 * 188.90740 * 2 1 3 25 25 C 1.38114 * 119.96491 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47168 * 89.99662 * 1 2 3 27 27 H 1.09006 * 109.47093 * 209.99219 * 1 2 3 28 28 H 1.08995 * 109.46846 * 329.99669 * 1 2 3 29 29 H 1.08001 * 119.92744 * 359.96001 * 3 2 1 30 30 H 1.09002 * 109.47280 * 269.97664 * 5 4 3 31 31 H 1.09000 * 109.47269 * 29.98417 * 5 4 3 32 32 H 1.09006 * 109.46701 * 149.97512 * 5 4 3 33 33 H 1.07997 * 120.03570 * 179.97438 * 6 4 3 34 34 H 0.97002 * 120.00533 * 314.85252 * 8 7 6 35 35 H 1.09002 * 109.47038 * 210.00591 * 12 11 9 36 36 H 1.08996 * 109.46708 * 330.00100 * 12 11 9 37 37 H 0.97003 * 120.00349 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.47078 * 209.99631 * 21 11 9 39 39 H 1.08999 * 109.46603 * 329.99863 * 21 11 9 40 40 H 1.08999 * 109.46943 * 300.00333 * 22 21 11 41 41 H 1.08998 * 109.46888 * 60.00093 * 22 21 11 42 42 H 1.08006 * 120.03468 * 0.04492 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5806 1.2023 0.0005 5 6 4.3291 2.5102 0.0011 6 6 4.2763 0.0093 0.0005 7 6 3.5856 -1.1957 -0.0005 8 7 4.2873 -2.4058 -0.0064 9 6 3.9160 -3.4041 0.8194 10 16 2.5221 -3.2314 1.7984 11 7 4.6418 -4.5383 0.8745 12 6 4.2385 -5.6233 1.7725 13 6 3.3035 -6.5554 1.0460 14 1 3.0368 -6.3594 0.0179 15 6 2.7886 -7.6583 1.6936 16 7 3.1138 -7.8971 2.9454 17 14 1.6290 -8.8134 0.7932 18 1 1.4243 -8.3263 -0.5946 19 1 2.2173 -10.1764 0.7573 20 1 0.3243 -8.8559 1.5010 21 6 5.8349 -4.6859 0.0371 22 6 7.0583 -4.1691 0.7967 23 6 8.2568 -4.3168 -0.0449 24 7 9.1812 -4.4326 -0.6947 25 6 2.1968 -1.1965 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3633 0.8899 0.5139 29 1 1.6559 2.1323 -0.0007 30 1 4.5103 2.8256 -1.0264 31 1 3.7368 3.2676 0.5146 32 1 5.2816 2.3834 0.5157 33 1 5.3563 0.0133 0.0005 34 1 5.0412 -2.5265 -0.6048 35 1 5.1216 -6.1741 2.0965 36 1 3.7316 -5.2054 2.6423 37 1 2.7519 -8.6732 3.4010 38 1 5.9779 -5.7380 -0.2092 39 1 5.7078 -4.1118 -0.8807 40 1 6.9152 -3.1170 1.0431 41 1 7.1853 -4.7431 1.7145 42 1 1.6568 -2.1319 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201204431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:05 Heat of formation + Delta-G solvation = 71.244896 kcal Electronic energy + Delta-G solvation = -23524.924992 eV Core-core repulsion = 20210.307210 eV Total energy + Delta-G solvation = -3314.617782 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17021 -38.78339 -36.86403 -35.59767 -33.41627 -32.97210 -31.82068 -30.36896 -27.53065 -26.99132 -26.74748 -25.42321 -23.65638 -21.55427 -21.37703 -20.22954 -18.23969 -17.63535 -17.23708 -16.54563 -16.05311 -15.51485 -15.45135 -15.01069 -14.73346 -14.23420 -13.97869 -13.91284 -13.39085 -13.26850 -13.15831 -12.83052 -12.79471 -12.65627 -12.52029 -12.40144 -12.09136 -11.80449 -11.54500 -11.47694 -11.26764 -11.18582 -11.03491 -10.88398 -10.78145 -10.41149 -10.21731 -9.92553 -8.99949 -8.53536 -8.44409 -8.02844 -7.05725 -6.26888 -6.13947 -4.18090 1.27437 1.57815 2.03080 2.41148 2.59311 2.60935 3.15918 3.26752 3.35959 3.37547 3.43575 3.87714 3.98689 4.38386 4.59355 4.71462 4.85338 4.89956 5.06283 5.18743 5.22996 5.31645 5.40479 5.43639 5.48999 5.51441 5.65586 5.72722 5.77683 5.80485 5.91410 5.97846 6.21541 6.33820 6.48575 6.62441 6.68333 6.86572 7.03632 7.14782 7.34328 7.35644 7.43314 7.76569 7.80504 8.03178 8.80628 9.45870 10.94553 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.004632 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.548240 B = 6042.919892 C = 8257.835923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.088 4.088 5 C -0.108 4.108 6 C -0.135 4.135 7 C 0.144 3.856 8 N -0.653 5.653 9 C 0.552 3.448 10 S -0.614 6.614 11 N -0.535 5.535 12 C 0.235 3.765 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.070 3.930 16 N -0.888 5.888 17 Si 0.899 3.101 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.281 1.281 21 C 0.098 3.902 22 C -0.047 4.047 23 C 0.213 3.787 24 N -0.433 5.433 25 C -0.071 4.071 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.398 0.602 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.264 0.736 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 16.135 -6.698 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.090 4.090 5 C -0.165 4.165 6 C -0.156 4.156 7 C 0.051 3.949 8 N -0.283 5.283 9 C 0.196 3.804 10 S -0.478 6.478 11 N -0.240 5.240 12 C 0.118 3.882 13 C -0.562 4.562 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.207 1.207 21 C -0.031 4.031 22 C -0.089 4.089 23 C -0.105 4.105 24 N -0.110 5.110 25 C -0.094 4.094 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.237 0.763 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.117 15.731 -6.782 17.618 hybrid contribution 0.221 -0.935 -0.884 1.305 sum 4.338 14.796 -7.665 17.219 Atomic orbital electron populations 1.20742 0.91167 1.02967 1.01868 1.19692 0.96083 0.92317 1.00225 1.20862 0.93326 0.97443 1.02415 1.19472 0.93664 0.94331 1.01497 1.20711 0.99757 0.94125 1.01870 1.20676 0.99147 0.90800 1.05017 1.17301 0.91309 0.83232 1.03086 1.42342 1.34192 1.12396 1.39372 1.22392 0.91094 0.81431 0.85470 1.93184 1.17132 1.87971 1.49523 1.47853 1.21923 1.14571 1.39621 1.20081 0.96734 0.81620 0.89808 1.21138 1.28550 1.07830 0.98653 0.92399 1.24805 0.96150 0.97608 0.94788 1.69915 1.44221 1.28347 1.10171 0.86432 0.80944 0.80159 0.79822 1.19874 1.21113 1.20692 1.21649 0.83657 1.04952 0.92844 1.19772 0.86271 1.05125 0.97763 1.28887 0.94447 0.93261 0.93934 1.81232 1.11321 1.08754 1.09714 1.21532 0.92706 0.99588 0.95529 0.91608 0.90952 0.91925 0.86506 0.91609 0.91695 0.91879 0.86454 0.76270 0.94040 0.90053 0.92596 0.86967 0.90717 0.87441 0.85796 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.00 0.36 -0.89 16 2 C -0.08 -1.08 5.88 -104.65 -0.62 -1.69 16 3 C -0.12 -1.42 9.35 -39.55 -0.37 -1.79 16 4 C -0.09 -0.99 5.88 -104.65 -0.62 -1.60 16 5 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 6 C -0.14 -1.62 9.62 -39.39 -0.38 -2.00 16 7 C 0.14 2.05 5.93 -83.71 -0.50 1.55 16 8 N -0.65 -8.91 5.19 -11.40 -0.06 -8.97 16 9 C 0.55 9.71 7.56 -86.92 -0.66 9.05 16 10 S -0.61 -13.69 24.22 -107.50 -2.60 -16.29 16 11 N -0.54 -9.03 2.46 -177.08 -0.43 -9.47 16 12 C 0.24 5.20 4.92 -5.19 -0.03 5.18 16 13 C -0.52 -13.22 9.39 -34.44 -0.32 -13.55 16 14 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 15 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 17 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.10 1.15 5.17 -4.04 -0.02 1.13 16 22 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 23 C 0.21 2.31 15.43 -20.77 -0.32 1.99 16 24 N -0.43 -5.87 18.54 42.15 0.78 -5.09 16 25 C -0.07 -1.09 7.53 -39.39 -0.30 -1.39 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.40 4.12 6.52 -40.82 -0.27 3.85 16 35 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.08 2.09 6.58 -51.93 -0.34 1.75 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.11 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.07 0.71 6.30 -51.93 -0.33 0.38 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.15 2.71 6.08 -44.04 -0.27 2.45 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -32.15 371.49 -10.48 -42.63 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.80 Total: 2.95 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -3.67 Total: -3.40 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.02 Total: -47.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -13.69 SS G_CDS: -2.60 Total: -16.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.15 -10.48 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201204431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.876 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds