Wall clock time and date at job start Tue Mar 31 2020 11:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38283 * 119.96543 * 2 1 4 4 C 1.38289 * 120.14405 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.96129 * 180.02562 * 4 3 2 6 6 C 1.38107 * 120.07120 * 0.02562 * 4 3 2 7 7 C 1.38891 * 119.92770 * 0.02562 * 6 4 3 8 8 N 1.39883 * 120.06654 * 179.72442 * 7 6 4 9 9 C 1.34775 * 119.99830 * 134.86034 * 8 7 6 10 10 S 1.71204 * 120.00018 * 4.15640 * 9 8 7 11 11 N 1.34776 * 120.00142 * 184.15260 * 9 8 7 12 12 C 1.46504 * 120.00171 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47251 * 90.00284 * 12 11 9 14 14 H 1.08001 * 119.99359 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00216 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99903 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00411 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46574 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47104 * 119.99881 * 17 15 13 20 20 H 1.48497 * 109.47268 * 240.00163 * 17 15 13 21 21 C 1.46505 * 120.00171 * 0.02562 * 11 9 8 22 22 C 1.53004 * 109.47246 * 89.99473 * 21 11 9 23 23 C 1.47196 * 109.46850 * 180.02562 * 22 21 11 24 24 N 8.88953 * 149.68732 * 188.90740 * 2 1 3 25 25 C 1.38114 * 119.96491 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47168 * 89.99662 * 1 2 3 27 27 H 1.09006 * 109.47093 * 209.99219 * 1 2 3 28 28 H 1.08995 * 109.46846 * 329.99669 * 1 2 3 29 29 H 1.08001 * 119.92744 * 359.96001 * 3 2 1 30 30 H 1.09002 * 109.47280 * 269.97664 * 5 4 3 31 31 H 1.09000 * 109.47269 * 29.98417 * 5 4 3 32 32 H 1.09006 * 109.46701 * 149.97512 * 5 4 3 33 33 H 1.07997 * 120.03570 * 179.97438 * 6 4 3 34 34 H 0.97002 * 120.00533 * 314.85252 * 8 7 6 35 35 H 1.09002 * 109.47038 * 210.00591 * 12 11 9 36 36 H 1.08996 * 109.46708 * 330.00100 * 12 11 9 37 37 H 0.97003 * 120.00349 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.47078 * 209.99631 * 21 11 9 39 39 H 1.08999 * 109.46603 * 329.99863 * 21 11 9 40 40 H 1.08999 * 109.46943 * 300.00333 * 22 21 11 41 41 H 1.08998 * 109.46888 * 60.00093 * 22 21 11 42 42 H 1.08006 * 120.03468 * 0.04492 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5806 1.2023 0.0005 5 6 4.3291 2.5102 0.0011 6 6 4.2763 0.0093 0.0005 7 6 3.5856 -1.1957 -0.0005 8 7 4.2873 -2.4058 -0.0064 9 6 3.9160 -3.4041 0.8194 10 16 2.5221 -3.2314 1.7984 11 7 4.6418 -4.5383 0.8745 12 6 4.2385 -5.6233 1.7725 13 6 3.3035 -6.5554 1.0460 14 1 3.0368 -6.3594 0.0179 15 6 2.7886 -7.6583 1.6936 16 7 3.1138 -7.8971 2.9454 17 14 1.6290 -8.8134 0.7932 18 1 1.4243 -8.3263 -0.5946 19 1 2.2173 -10.1764 0.7573 20 1 0.3243 -8.8559 1.5010 21 6 5.8349 -4.6859 0.0371 22 6 7.0583 -4.1691 0.7967 23 6 8.2568 -4.3168 -0.0449 24 7 9.1812 -4.4326 -0.6947 25 6 2.1968 -1.1965 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3633 0.8899 0.5139 29 1 1.6559 2.1323 -0.0007 30 1 4.5103 2.8256 -1.0264 31 1 3.7368 3.2676 0.5146 32 1 5.2816 2.3834 0.5157 33 1 5.3563 0.0133 0.0005 34 1 5.0412 -2.5265 -0.6048 35 1 5.1216 -6.1741 2.0965 36 1 3.7316 -5.2054 2.6423 37 1 2.7519 -8.6732 3.4010 38 1 5.9779 -5.7380 -0.2092 39 1 5.7078 -4.1118 -0.8807 40 1 6.9152 -3.1170 1.0431 41 1 7.1853 -4.7431 1.7145 42 1 1.6568 -2.1319 0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201204431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:04 Heat of formation + Delta-G solvation = 54.957995 kcal Electronic energy + Delta-G solvation = -23525.631245 eV Core-core repulsion = 20210.307210 eV Total energy + Delta-G solvation = -3315.324035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34247 -39.93680 -37.84523 -36.84038 -34.79350 -34.30547 -32.96413 -31.55318 -29.11845 -27.97159 -27.68463 -26.53112 -25.36311 -22.76977 -22.58613 -21.27417 -19.41069 -18.74128 -18.65775 -18.22688 -17.11680 -16.72642 -16.52611 -16.34333 -16.11655 -15.50665 -15.32872 -14.83376 -14.51900 -14.29988 -14.06903 -13.90683 -13.79634 -13.77443 -13.75169 -13.35222 -13.23961 -13.15110 -12.83517 -12.64769 -12.62633 -12.39325 -12.26678 -12.20122 -12.06022 -11.93808 -11.89222 -11.61621 -10.56037 -10.35820 -9.46423 -9.18603 -8.71686 -8.15792 -7.90559 -6.24556 0.09892 0.59080 0.77889 1.04342 1.39739 1.44738 1.51891 1.60297 1.72456 1.75940 2.28773 2.45059 2.89476 3.01669 3.19197 3.67585 3.79485 3.99091 4.02448 4.23466 4.30457 4.39265 4.52071 4.53816 4.62866 4.72582 4.80981 4.82886 4.89497 4.97306 5.00646 5.03748 5.18047 5.26986 5.36303 5.41742 5.52355 5.65078 5.74114 5.81297 5.84794 5.93902 6.08230 6.23949 6.46021 6.49135 6.80402 7.41787 8.91752 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.004632 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.548240 B = 6042.919892 C = 8257.835923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.086 4.086 5 C -0.106 4.106 6 C -0.130 4.130 7 C 0.121 3.879 8 N -0.624 5.624 9 C 0.579 3.421 10 S -0.719 6.719 11 N -0.531 5.531 12 C 0.253 3.747 13 C -0.523 4.523 14 H 0.050 0.950 15 C 0.022 3.978 16 N -0.920 5.920 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.289 1.289 21 C 0.092 3.908 22 C -0.034 4.034 23 C 0.243 3.757 24 N -0.477 5.477 25 C -0.096 4.096 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.419 0.581 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 18.386 -8.338 20.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.162 4.162 6 C -0.151 4.151 7 C 0.028 3.972 8 N -0.254 5.254 9 C 0.218 3.782 10 S -0.586 6.586 11 N -0.234 5.234 12 C 0.133 3.867 13 C -0.562 4.562 14 H 0.068 0.932 15 C -0.178 4.178 16 N -0.559 5.559 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.215 1.215 21 C -0.035 4.035 22 C -0.075 4.075 23 C -0.074 4.074 24 N -0.154 5.154 25 C -0.119 4.119 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.161 0.839 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.916 18.024 -8.494 20.784 hybrid contribution -0.294 -1.503 -0.455 1.597 sum 5.622 16.521 -8.949 19.612 Atomic orbital electron populations 1.20747 0.90375 1.02706 1.02694 1.19931 0.96980 0.92398 1.00194 1.21198 0.93978 0.97624 1.01147 1.19940 0.93729 0.95576 0.99529 1.20777 0.99894 0.92379 1.03194 1.20961 1.00542 0.89862 1.03704 1.17512 0.91065 0.83863 1.04732 1.42112 1.34021 1.11332 1.37926 1.21708 0.89369 0.82207 0.84931 1.93416 1.21888 1.89626 1.53657 1.47541 1.23222 1.13175 1.39502 1.19505 0.95998 0.82048 0.89189 1.21393 1.28480 1.08046 0.98328 0.93221 1.25492 0.97607 0.99273 0.95431 1.70003 1.45585 1.29018 1.11336 0.85601 0.78877 0.78993 0.78696 1.19600 1.19951 1.21531 1.21945 0.82394 1.05864 0.93295 1.19692 0.84191 1.06589 0.97034 1.28866 0.93909 0.91790 0.92866 1.81283 1.12723 1.10370 1.11057 1.21355 0.93609 0.99076 0.97859 0.90217 0.93325 0.89997 0.83913 0.90017 0.90620 0.90892 0.83653 0.73812 0.93419 0.93752 0.92660 0.87197 0.87768 0.85004 0.85235 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 10.01 71.24 0.71 -1.76 16 2 C -0.09 -2.45 5.88 -19.88 -0.12 -2.57 16 3 C -0.12 -2.53 9.35 22.29 0.21 -2.33 16 4 C -0.09 -1.65 5.88 -19.88 -0.12 -1.77 16 5 C -0.11 -1.26 10.01 71.23 0.71 -0.54 16 6 C -0.13 -2.71 9.62 22.40 0.22 -2.50 16 7 C 0.12 3.30 5.93 38.17 0.23 3.53 16 8 N -0.62 -16.00 5.19 -189.99 -0.99 -16.99 16 9 C 0.58 20.28 7.56 179.06 1.35 21.63 16 10 S -0.72 -33.85 24.22 -56.49 -1.37 -35.22 16 11 N -0.53 -17.54 2.46 -714.16 -1.75 -19.29 16 12 C 0.25 11.35 4.92 85.63 0.42 11.77 16 13 C -0.52 -26.89 9.39 25.60 0.24 -26.65 16 14 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 15 C 0.02 1.17 5.46 84.65 0.46 1.63 16 16 N -0.92 -51.97 13.29 21.44 0.28 -51.68 16 17 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 C 0.09 1.93 5.17 86.38 0.45 2.37 16 22 C -0.03 -0.51 6.03 28.79 0.17 -0.34 16 23 C 0.24 4.57 15.43 89.44 1.38 5.95 16 24 N -0.48 -11.90 18.54 20.00 0.37 -11.53 16 25 C -0.10 -3.05 7.53 22.39 0.17 -2.89 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.32 8.08 -2.38 -0.02 1.30 16 28 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 29 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 32 H 0.07 0.76 8.08 -2.38 -0.02 0.74 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.42 7.27 6.52 -92.71 -0.60 6.67 16 35 H 0.05 2.09 8.07 -2.39 -0.02 2.07 16 36 H 0.04 2.37 6.58 -2.39 -0.02 2.36 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.11 2.48 8.07 -2.39 -0.02 2.46 16 39 H 0.10 1.60 6.30 -2.39 -0.02 1.59 16 40 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.12 4.49 6.08 -8.27 -0.05 4.44 16 Total: -1.00 -74.61 371.49 5.46 -69.15 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.40 Total: 14.53 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 6.49 Total: 5.54 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -2.08 Total: -99.49 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -33.85 SS G_CDS: -1.37 Total: -35.22 kcal Total: -74.61 5.46 -69.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201204431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.108 kcal (2) G-P(sol) polarization free energy of solvation -74.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds