Wall clock time and date at job start Tue Mar 31 2020 11:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00430 * 2 1 4 4 H 1.48498 * 109.47277 * 240.00269 * 3 2 1 5 5 H 1.48502 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47023 * 120.00287 * 3 2 1 7 7 C 1.37884 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46953 * 185.91234 * 9 7 2 11 11 C 1.46900 * 110.99308 * 195.42318 * 10 9 7 12 12 C 1.50703 * 109.46751 * 169.99852 * 11 10 9 13 13 C 1.34516 * 125.78975 * 90.00015 * 12 11 10 14 14 C 1.41376 * 106.84162 * 180.02562 * 13 12 11 15 15 C 1.34512 * 106.84273 * 359.97438 * 14 13 12 16 16 C 1.50701 * 125.78973 * 180.02562 * 15 14 13 17 17 F 1.39902 * 109.47106 * 90.00375 * 16 15 14 18 18 F 1.39904 * 109.47228 * 210.00390 * 16 15 14 19 19 F 1.39901 * 109.47275 * 330.00381 * 16 15 14 20 20 O 1.34299 * 125.79173 * 269.69478 * 12 11 10 21 21 C 1.46896 * 111.00115 * 71.47220 * 10 9 7 22 22 C 1.55239 * 110.46948 * 24.83086 * 21 10 9 23 23 C 1.54893 * 102.58898 * 203.39340 * 22 21 10 24 24 C 1.54266 * 104.30771 * 37.93461 * 23 22 21 25 25 C 1.53874 * 106.60195 * 336.31906 * 24 23 22 26 26 H 0.97003 * 119.99473 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46997 * 65.90731 * 9 7 2 28 28 H 1.09003 * 109.46901 * 305.91193 * 9 7 2 29 29 H 1.09002 * 109.47619 * 289.99578 * 11 10 9 30 30 H 1.09000 * 109.47378 * 50.00242 * 11 10 9 31 31 H 1.08004 * 126.57953 * 359.96423 * 13 12 11 32 32 H 1.08001 * 126.58031 * 179.97438 * 14 13 12 33 33 H 1.08997 * 110.43412 * 147.47875 * 21 10 9 34 34 H 1.09001 * 110.89447 * 85.10430 * 22 21 10 35 35 H 1.09003 * 110.76959 * 321.62740 * 22 21 10 36 36 H 1.08998 * 110.48377 * 279.18708 * 23 22 21 37 37 H 1.09001 * 110.48665 * 156.67816 * 23 22 21 38 38 H 1.09000 * 110.03156 * 95.61396 * 24 23 22 39 39 H 1.09007 * 110.02656 * 216.98881 * 24 23 22 40 40 H 1.09001 * 110.02950 * 119.28755 * 25 24 23 41 41 H 1.08994 * 110.03348 * 240.67055 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.1991 -3.6122 0.1415 11 6 1.5683 -4.8899 -0.2156 12 6 2.6216 -5.9647 -0.2966 13 6 3.0249 -6.7491 0.7190 14 6 4.0215 -7.6083 0.2022 15 6 4.1673 -7.2981 -1.0985 16 6 5.1227 -7.9568 -2.0600 17 9 4.4918 -9.0450 -2.6724 18 9 5.5123 -7.0337 -3.0364 19 9 6.2511 -8.4033 -1.3638 20 8 3.3128 -6.3057 -1.3964 21 6 2.7540 -3.6608 1.5008 22 6 1.7814 -2.9912 2.5085 23 6 2.7232 -2.5895 3.6707 24 6 4.0182 -2.1290 2.9701 25 6 4.0378 -2.8102 1.5905 26 1 -0.4849 0.8401 0.0004 27 1 0.7055 -2.6039 -0.9385 28 1 0.5475 -2.5126 0.8321 29 1 0.8339 -5.1575 0.5441 30 1 1.0730 -4.7931 -1.1817 31 1 2.6584 -6.7261 1.7347 32 1 4.5621 -8.3681 0.7471 33 1 2.9579 -4.6911 1.7919 34 1 1.0269 -3.7000 2.8501 35 1 1.3141 -2.1105 2.0678 36 1 2.9216 -3.4463 4.3145 37 1 2.2902 -1.7722 4.2475 38 1 4.0136 -1.0454 2.8517 39 1 4.8871 -2.4369 3.5519 40 1 4.0427 -2.0572 0.8024 41 1 4.9167 -3.4487 1.5019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232443622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:45 Heat of formation + Delta-G solvation = -118.898667 kcal Electronic energy + Delta-G solvation = -27540.483948 eV Core-core repulsion = 23200.718560 eV Total energy + Delta-G solvation = -4339.765388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.35233 -47.91094 -47.81247 -42.77309 -38.63627 -34.82004 -33.31139 -32.77973 -31.12512 -28.19882 -28.06714 -27.27211 -25.60497 -23.55377 -22.24235 -21.87630 -20.62918 -19.72880 -18.98202 -18.76497 -18.48165 -18.42244 -16.79849 -16.24495 -15.58241 -15.20301 -14.82745 -14.70993 -14.66337 -14.53579 -14.27496 -14.02787 -13.97655 -13.94935 -13.86000 -13.51624 -13.14018 -12.92265 -12.53096 -12.35118 -12.18670 -11.67396 -11.34786 -11.01501 -10.95770 -10.73945 -10.56223 -10.40930 -10.38360 -10.19052 -10.07066 -9.63383 -9.38163 -8.97667 -8.75047 -8.44986 -7.34872 -6.07870 -4.08050 1.27937 1.90013 2.38173 2.93200 3.30465 3.35185 3.38219 3.61650 4.08609 4.15472 4.38099 4.71171 4.78115 4.88959 5.25861 5.30095 5.34728 5.43750 5.51571 5.58173 5.64950 5.73859 5.88260 5.92848 6.16809 6.18639 6.25410 6.30321 6.36892 6.49318 6.56523 6.63028 6.87915 6.91268 6.97329 7.05999 7.26431 7.39726 7.85467 7.99827 8.06386 8.42323 9.00121 9.55708 11.02285 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003706 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.913067 B = 7553.478378 C = 8028.429592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.072 0.928 9 C 0.184 3.816 10 N -0.526 5.526 11 C 0.119 3.881 12 C 0.073 3.927 13 C -0.227 4.227 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.562 3.438 17 F -0.170 7.170 18 F -0.167 7.167 19 F -0.163 7.163 20 O -0.140 6.140 21 C 0.087 3.913 22 C -0.164 4.164 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.116 4.116 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -14.783 2.469 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.090 0.910 9 C 0.060 3.940 10 N -0.250 5.250 11 C -0.010 4.010 12 C 0.020 3.980 13 C -0.246 4.246 14 C -0.140 4.140 15 C -0.192 4.192 16 C 0.507 3.493 17 F -0.151 7.151 18 F -0.148 7.148 19 F -0.144 7.144 20 O -0.035 6.035 21 C -0.021 4.021 22 C -0.203 4.203 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.154 4.154 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.141 0.859 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.813 -14.457 1.789 16.081 hybrid contribution 0.004 0.562 0.619 0.836 sum 6.817 -13.894 2.408 15.663 Atomic orbital electron populations 1.69933 1.05951 1.26908 1.51030 1.24939 0.94785 0.99080 0.95537 0.86655 0.79572 0.83082 0.78758 1.20201 1.21440 1.20168 1.21219 0.93740 0.89318 1.49706 0.90997 1.20060 0.90241 0.87007 0.96718 1.62318 1.37190 1.01001 1.24541 1.20706 0.89813 0.87549 1.02892 1.23112 0.94805 0.96803 0.83265 1.21638 1.02177 0.99963 1.00856 1.21607 0.99102 1.00942 0.92379 1.21629 1.02252 0.99691 0.95585 1.16746 0.78247 0.76223 0.78037 1.93255 1.82093 1.55960 1.83791 1.93263 1.91549 1.65807 1.64215 1.93229 1.52333 1.89588 1.79241 1.84032 1.40962 1.41938 1.36542 1.22520 0.94923 0.97487 0.87208 1.23478 0.97511 1.03363 0.95901 1.22180 0.96270 0.99554 0.97398 1.22026 0.96555 1.00693 0.96250 1.22330 0.95591 0.99593 0.97870 0.92871 0.95787 0.96322 0.91582 0.88878 0.82442 0.82395 0.91932 0.93761 0.85909 0.93254 0.92523 0.91965 0.93406 0.88442 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 13.29 55.43 0.74 -24.24 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.50 -12.79 7.32 -34.44 -0.25 -13.05 16 8 H 0.07 1.84 4.95 -52.49 -0.26 1.58 16 9 C 0.18 4.28 4.26 -4.98 -0.02 4.26 16 10 N -0.53 -10.34 4.38 -227.31 -0.99 -11.33 16 11 C 0.12 1.94 5.44 -4.97 -0.03 1.91 16 12 C 0.07 1.12 6.37 -35.62 -0.23 0.89 16 13 C -0.23 -2.97 9.22 -39.70 -0.37 -3.34 16 14 C -0.12 -1.48 10.46 -39.71 -0.42 -1.89 16 15 C -0.14 -1.95 6.65 -35.62 -0.24 -2.19 16 16 C 0.56 7.04 3.54 36.01 0.13 7.16 16 17 F -0.17 -2.05 17.30 2.25 0.04 -2.01 16 18 F -0.17 -2.31 17.29 2.25 0.04 -2.27 16 19 F -0.16 -1.86 17.01 2.25 0.04 -1.83 16 20 O -0.14 -2.27 10.64 5.72 0.06 -2.21 16 21 C 0.09 1.56 2.71 -65.87 -0.18 1.38 16 22 C -0.16 -2.99 5.34 -24.55 -0.13 -3.12 16 23 C -0.12 -1.87 6.82 -25.07 -0.17 -2.04 16 24 C -0.12 -1.95 6.80 -25.61 -0.17 -2.13 16 25 C -0.12 -2.12 6.11 -25.61 -0.16 -2.27 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.02 0.61 7.82 -51.93 -0.41 0.20 16 28 H 0.02 0.46 5.47 -51.93 -0.28 0.18 16 29 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.09 1.51 7.87 -51.93 -0.41 1.10 16 31 H 0.16 1.76 7.59 -52.48 -0.40 1.36 16 32 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.06 1.01 5.15 -51.93 -0.27 0.74 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.12 2.73 4.53 -51.93 -0.24 2.49 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 2.05 4.83 -51.93 -0.25 1.80 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -26.93 338.79 -7.35 -34.28 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.03 Total: 1.75 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.33 Total: -12.98 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.26 Total: -35.56 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: 0.06 Total: -2.21 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.12 Total: -6.11 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.93 -7.35 -34.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232443622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.623 kcal (2) G-P(sol) polarization free energy of solvation -26.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds