Wall clock time and date at job start Tue Mar 31 2020 11:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00430 * 2 1 4 4 H 1.48498 * 109.47277 * 240.00269 * 3 2 1 5 5 H 1.48502 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47023 * 120.00287 * 3 2 1 7 7 C 1.37884 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46953 * 185.91234 * 9 7 2 11 11 C 1.46900 * 110.99308 * 195.42318 * 10 9 7 12 12 C 1.50703 * 109.46751 * 169.99852 * 11 10 9 13 13 C 1.34516 * 125.78975 * 90.00015 * 12 11 10 14 14 C 1.41376 * 106.84162 * 180.02562 * 13 12 11 15 15 C 1.34512 * 106.84273 * 359.97438 * 14 13 12 16 16 C 1.50701 * 125.78973 * 180.02562 * 15 14 13 17 17 F 1.39902 * 109.47106 * 90.00375 * 16 15 14 18 18 F 1.39904 * 109.47228 * 210.00390 * 16 15 14 19 19 F 1.39901 * 109.47275 * 330.00381 * 16 15 14 20 20 O 1.34299 * 125.79173 * 269.69478 * 12 11 10 21 21 C 1.46896 * 111.00115 * 71.47220 * 10 9 7 22 22 C 1.55239 * 110.46948 * 24.83086 * 21 10 9 23 23 C 1.54893 * 102.58898 * 203.39340 * 22 21 10 24 24 C 1.54266 * 104.30771 * 37.93461 * 23 22 21 25 25 C 1.53874 * 106.60195 * 336.31906 * 24 23 22 26 26 H 0.97003 * 119.99473 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46997 * 65.90731 * 9 7 2 28 28 H 1.09003 * 109.46901 * 305.91193 * 9 7 2 29 29 H 1.09002 * 109.47619 * 289.99578 * 11 10 9 30 30 H 1.09000 * 109.47378 * 50.00242 * 11 10 9 31 31 H 1.08004 * 126.57953 * 359.96423 * 13 12 11 32 32 H 1.08001 * 126.58031 * 179.97438 * 14 13 12 33 33 H 1.08997 * 110.43412 * 147.47875 * 21 10 9 34 34 H 1.09001 * 110.89447 * 85.10430 * 22 21 10 35 35 H 1.09003 * 110.76959 * 321.62740 * 22 21 10 36 36 H 1.08998 * 110.48377 * 279.18708 * 23 22 21 37 37 H 1.09001 * 110.48665 * 156.67816 * 23 22 21 38 38 H 1.09000 * 110.03156 * 95.61396 * 24 23 22 39 39 H 1.09007 * 110.02656 * 216.98881 * 24 23 22 40 40 H 1.09001 * 110.02950 * 119.28755 * 25 24 23 41 41 H 1.08994 * 110.03348 * 240.67055 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.1991 -3.6122 0.1415 11 6 1.5683 -4.8899 -0.2156 12 6 2.6216 -5.9647 -0.2966 13 6 3.0249 -6.7491 0.7190 14 6 4.0215 -7.6083 0.2022 15 6 4.1673 -7.2981 -1.0985 16 6 5.1227 -7.9568 -2.0600 17 9 4.4918 -9.0450 -2.6724 18 9 5.5123 -7.0337 -3.0364 19 9 6.2511 -8.4033 -1.3638 20 8 3.3128 -6.3057 -1.3964 21 6 2.7540 -3.6608 1.5008 22 6 1.7814 -2.9912 2.5085 23 6 2.7232 -2.5895 3.6707 24 6 4.0182 -2.1290 2.9701 25 6 4.0378 -2.8102 1.5905 26 1 -0.4849 0.8401 0.0004 27 1 0.7055 -2.6039 -0.9385 28 1 0.5475 -2.5126 0.8321 29 1 0.8339 -5.1575 0.5441 30 1 1.0730 -4.7931 -1.1817 31 1 2.6584 -6.7261 1.7347 32 1 4.5621 -8.3681 0.7471 33 1 2.9579 -4.6911 1.7919 34 1 1.0269 -3.7000 2.8501 35 1 1.3141 -2.1105 2.0678 36 1 2.9216 -3.4463 4.3145 37 1 2.2902 -1.7722 4.2475 38 1 4.0136 -1.0454 2.8517 39 1 4.8871 -2.4369 3.5519 40 1 4.0427 -2.0572 0.8024 41 1 4.9167 -3.4487 1.5019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232443622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:44 Heat of formation + Delta-G solvation = -132.681199 kcal Electronic energy + Delta-G solvation = -27541.081604 eV Core-core repulsion = 23200.718560 eV Total energy + Delta-G solvation = -4340.363043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.33380 -48.86681 -48.82328 -43.86466 -40.11349 -36.22962 -34.80895 -34.26156 -32.40843 -29.65585 -29.45932 -28.81442 -26.97650 -24.92963 -23.76398 -23.06981 -21.73565 -21.09986 -20.22458 -19.74698 -19.72870 -19.43988 -18.60604 -17.47577 -17.09311 -16.62445 -16.34431 -16.07740 -15.69292 -15.66780 -15.32957 -15.25231 -15.02101 -14.97155 -14.96598 -14.85153 -14.58484 -14.22762 -13.98282 -13.72646 -13.39258 -13.14519 -12.95252 -12.75461 -12.67453 -12.37876 -12.06249 -11.88677 -11.76896 -11.67140 -11.31176 -11.14415 -10.93625 -10.69176 -10.47371 -9.85994 -8.91583 -8.11624 -6.16441 0.20115 0.88629 1.35360 1.42469 1.43707 1.50388 1.90872 2.44161 2.60726 3.04874 3.17399 3.22184 3.30778 3.73159 3.83413 3.93854 3.98390 4.24593 4.25425 4.39441 4.50400 4.58702 4.73477 4.73858 4.77697 4.81566 4.92077 4.98481 5.06475 5.18434 5.23738 5.30654 5.31309 5.35910 5.51585 5.58819 5.78733 5.84866 5.93752 6.18979 6.41235 6.65517 6.99437 7.50768 8.98030 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003706 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.913067 B = 7553.478378 C = 8028.429592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.069 0.931 9 C 0.200 3.800 10 N -0.540 5.540 11 C 0.120 3.880 12 C 0.046 3.954 13 C -0.210 4.210 14 C -0.108 4.108 15 C -0.156 4.156 16 C 0.568 3.432 17 F -0.167 7.167 18 F -0.178 7.178 19 F -0.153 7.153 20 O -0.168 6.168 21 C 0.090 3.910 22 C -0.164 4.164 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.118 4.118 26 H 0.260 0.740 27 H -0.006 1.006 28 H 0.008 0.992 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.183 0.817 32 H 0.193 0.807 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 -16.586 4.360 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.539 4.539 8 H 0.087 0.913 9 C 0.075 3.925 10 N -0.264 5.264 11 C -0.008 4.008 12 C -0.006 4.006 13 C -0.229 4.229 14 C -0.127 4.127 15 C -0.207 4.207 16 C 0.513 3.487 17 F -0.148 7.148 18 F -0.159 7.159 19 F -0.134 7.134 20 O -0.064 6.064 21 C -0.018 4.018 22 C -0.202 4.202 23 C -0.148 4.148 24 C -0.153 4.153 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.012 0.988 28 H 0.025 0.975 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.201 0.799 32 H 0.210 0.790 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.417 -16.273 3.685 18.688 hybrid contribution -0.451 1.017 0.001 1.112 sum 7.966 -15.257 3.687 17.601 Atomic orbital electron populations 1.70044 1.07213 1.27350 1.52677 1.25615 0.95412 1.02005 0.95644 0.85799 0.78474 0.79739 0.78845 1.20160 1.21357 1.19330 1.21511 0.93745 0.90448 1.48175 0.91316 1.19685 0.90251 0.87948 0.94615 1.62137 1.36583 1.01561 1.26141 1.20639 0.90680 0.86573 1.02866 1.22913 0.95762 0.97807 0.84084 1.21963 1.01187 0.98565 1.01200 1.22027 0.98297 1.00782 0.91568 1.22018 1.02292 0.99596 0.96757 1.16626 0.78279 0.76035 0.77714 1.93260 1.82093 1.55723 1.83755 1.93242 1.91648 1.66331 1.64697 1.93247 1.51792 1.89425 1.78972 1.83986 1.41893 1.43116 1.37452 1.22601 0.94398 0.98785 0.86034 1.23326 0.98225 1.01866 0.96798 1.22178 0.95112 1.00700 0.96814 1.22013 0.98180 0.99329 0.95780 1.22293 0.96464 0.99069 0.97717 0.93101 0.98767 0.97456 0.89717 0.90017 0.79929 0.78972 0.89225 0.92274 0.90441 0.90068 0.92765 0.94006 0.90486 0.91963 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.47 13.29 21.45 0.28 -53.19 16 2 C 0.01 0.60 5.46 84.66 0.46 1.06 16 3 Si 0.94 43.42 29.54 68.60 2.03 45.44 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.50 -26.36 7.32 25.60 0.19 -26.17 16 8 H 0.07 3.63 4.95 -2.91 -0.01 3.62 16 9 C 0.20 9.69 4.26 85.56 0.36 10.05 16 10 N -0.54 -21.35 4.38 -873.06 -3.82 -25.17 16 11 C 0.12 3.90 5.44 85.56 0.47 4.36 16 12 C 0.05 1.35 6.37 24.83 0.16 1.51 16 13 C -0.21 -4.75 9.22 22.19 0.20 -4.54 16 14 C -0.11 -2.24 10.46 22.19 0.23 -2.00 16 15 C -0.16 -4.03 6.65 24.83 0.17 -3.87 16 16 C 0.57 13.28 3.54 71.24 0.25 13.53 16 17 F -0.17 -3.78 17.30 44.97 0.78 -3.00 16 18 F -0.18 -4.79 17.29 44.97 0.78 -4.01 16 19 F -0.15 -3.13 17.01 44.97 0.76 -2.37 16 20 O -0.17 -5.35 10.64 -2.45 -0.03 -5.37 16 21 C 0.09 3.08 2.71 46.11 0.12 3.21 16 22 C -0.16 -5.78 5.34 32.01 0.17 -5.61 16 23 C -0.11 -3.27 6.82 31.67 0.22 -3.05 16 24 C -0.12 -3.59 6.80 31.32 0.21 -3.38 16 25 C -0.12 -4.13 6.11 31.32 0.19 -3.94 16 26 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 27 H -0.01 -0.30 7.82 -2.39 -0.02 -0.32 16 28 H 0.01 0.40 5.47 -2.39 -0.01 0.39 16 29 H 0.09 2.40 8.12 -2.39 -0.02 2.38 16 30 H 0.08 2.77 7.87 -2.39 -0.02 2.75 16 31 H 0.18 3.16 7.59 -2.91 -0.02 3.13 16 32 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.09 2.58 5.15 -2.39 -0.01 2.57 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 3.51 4.53 -2.39 -0.01 3.50 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.06 2.64 4.83 -2.39 -0.01 2.63 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -59.89 338.79 5.26 -54.63 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.07 Total: 11.87 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.41 Total: -18.84 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -3.54 Total: -78.36 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.03 Total: -5.37 kcal Atomic # 9 Polarization: -11.70 SS G_CDS: 2.32 Total: -9.38 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -59.89 5.26 -54.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232443622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.050 kcal (2) G-P(sol) polarization free energy of solvation -59.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds