Wall clock time and date at job start Tue Mar 31 2020 11:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.98619 * 2 1 4 4 C 1.38185 * 120.04822 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.98656 * 179.74037 * 4 3 2 6 6 N 1.46507 * 109.47107 * 104.99602 * 5 4 3 7 7 C 1.36937 * 119.99987 * 270.00191 * 6 5 4 8 8 H 1.08001 * 120.00226 * 5.77617 * 7 6 5 9 9 C 1.38813 * 119.99592 * 185.77345 * 7 6 5 10 10 N 1.31615 * 120.00171 * 355.03027 * 9 7 6 11 11 Si 1.86807 * 119.99702 * 175.02828 * 9 7 6 12 12 H 1.48499 * 109.47008 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46864 * 120.00179 * 11 9 7 14 14 H 1.48497 * 109.46951 * 240.00122 * 11 9 7 15 15 C 1.46499 * 119.99782 * 90.00275 * 6 5 4 16 16 C 1.50700 * 109.47288 * 85.45520 * 15 6 5 17 17 C 1.38234 * 120.00367 * 275.00276 * 16 15 6 18 18 C 1.38237 * 120.00004 * 179.76782 * 17 16 15 19 19 C 1.38238 * 119.99551 * 0.49916 * 18 17 16 20 20 C 1.38226 * 120.00459 * 359.75197 * 19 18 17 21 21 C 1.38238 * 119.99322 * 95.26975 * 16 15 6 22 22 C 1.38494 * 120.02902 * 0.02562 * 4 3 2 23 23 F 1.35100 * 120.01735 * 179.97438 * 22 4 3 24 24 C 1.38399 * 119.97313 * 359.97438 * 22 4 3 25 25 C 1.38444 * 119.95009 * 0.02562 * 24 22 4 26 26 F 1.35100 * 120.01152 * 179.97438 * 25 24 22 27 27 H 1.08994 * 109.47130 * 90.00177 * 1 2 3 28 28 H 1.09002 * 109.46891 * 210.00408 * 1 2 3 29 29 H 1.09004 * 109.47121 * 330.00129 * 1 2 3 30 30 H 1.07998 * 119.97447 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47332 * 225.00035 * 5 4 3 32 32 H 1.09006 * 109.47212 * 344.99898 * 5 4 3 33 33 H 0.97005 * 119.99763 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.47249 * 205.46117 * 15 6 5 35 35 H 1.09006 * 109.46832 * 325.45633 * 15 6 5 36 36 H 1.07998 * 119.99535 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.00258 * 180.22927 * 18 17 16 38 38 H 1.08003 * 119.99604 * 179.72808 * 19 18 17 39 39 H 1.08000 * 120.00287 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00348 * 0.02562 * 21 16 15 41 41 H 1.08000 * 120.02818 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1973 0.0000 4 6 3.5797 1.1988 0.0005 5 6 4.3315 2.5049 -0.0054 6 7 4.8844 2.7562 1.3279 7 6 4.1498 3.4465 2.2547 8 1 3.1292 3.7244 2.0367 9 6 4.7170 3.7890 3.4745 10 7 5.9256 3.3668 3.7800 11 14 3.7648 4.8491 4.6825 12 1 2.4398 5.1893 4.1049 13 1 3.5741 4.1030 5.9523 14 1 4.5236 6.0970 4.9508 15 6 6.2231 2.2690 1.6695 16 6 7.2529 3.2740 1.2219 17 6 7.7210 3.2517 -0.0786 18 6 8.6621 4.1767 -0.4904 19 6 9.1426 5.1176 0.4012 20 6 8.6783 5.1367 1.7030 21 6 7.7334 4.2149 2.1134 22 6 4.2741 0.0005 0.0005 23 9 5.6251 0.0023 0.0005 24 6 3.5835 -1.1988 0.0005 25 6 2.1990 -1.1992 0.0000 26 9 1.5236 -2.3692 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6573 2.1323 -0.0004 31 1 5.1428 2.4539 -0.7315 32 1 3.6526 3.3138 -0.2755 33 1 6.3221 3.6065 4.6323 34 1 6.2951 2.1307 2.7482 35 1 6.4022 1.3175 1.1685 36 1 7.3490 2.5136 -0.7737 37 1 9.0251 4.1616 -1.5074 38 1 9.8811 5.8375 0.0806 39 1 9.0541 5.8715 2.3996 40 1 7.3711 4.2294 3.1308 41 1 4.1241 -2.1338 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232786587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:47 Heat of formation + Delta-G solvation = -0.982795 kcal Electronic energy + Delta-G solvation = -26602.498700 eV Core-core repulsion = 22698.615753 eV Total energy + Delta-G solvation = -3903.882947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.80802 -48.58152 -38.87295 -38.19521 -35.74199 -32.74387 -31.99945 -30.90709 -29.85905 -29.57777 -26.64133 -25.65417 -25.49855 -22.76908 -22.13310 -21.45189 -20.53945 -19.57857 -17.89829 -17.33649 -16.81209 -15.88550 -15.75519 -15.35643 -15.09439 -15.00236 -14.72636 -14.28142 -14.11029 -13.81650 -13.55019 -13.41282 -13.27544 -13.24420 -12.92700 -12.41350 -12.27310 -12.09553 -11.66300 -11.54158 -11.39690 -11.26138 -11.03703 -10.94316 -10.76322 -10.30588 -10.20664 -10.12498 -9.93495 -9.38286 -8.80219 -8.69156 -8.15549 -7.90710 -7.59215 -6.96206 -5.56125 -3.32706 1.27231 1.31514 2.38557 2.49284 3.30776 3.37180 3.39085 3.63838 4.17436 4.36865 4.72593 4.83019 4.84967 4.87139 5.06987 5.27171 5.38308 5.59009 5.62613 5.70423 5.72420 5.82185 5.84062 5.94214 5.97891 6.06828 6.17855 6.28117 6.34049 6.41027 6.51660 6.60196 6.71657 6.74267 6.92647 7.09693 7.15266 7.23087 7.42782 7.51949 7.71151 7.87053 8.05948 8.24093 8.58384 9.21653 9.73595 10.09043 11.10703 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.004990 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.424021 B = 5609.799996 C = 7117.364632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C -0.058 4.058 4 C -0.116 4.116 5 C 0.178 3.822 6 N -0.578 5.578 7 C -0.211 4.211 8 H 0.078 0.922 9 C -0.020 4.020 10 N -0.903 5.903 11 Si 0.919 3.081 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.123 3.877 16 C -0.054 4.054 17 C -0.133 4.133 18 C -0.146 4.146 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.096 4.096 22 C 0.133 3.867 23 F -0.124 7.124 24 C -0.192 4.192 25 C 0.106 3.894 26 F -0.140 7.140 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.252 0.748 34 H 0.174 0.826 35 H 0.028 0.972 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.175 0.825 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 -4.430 -7.195 9.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.134 4.134 3 C -0.077 4.077 4 C -0.120 4.120 5 C 0.050 3.950 6 N -0.296 5.296 7 C -0.339 4.339 8 H 0.095 0.905 9 C -0.211 4.211 10 N -0.556 5.556 11 Si 0.750 3.250 12 H -0.207 1.207 13 H -0.218 1.218 14 H -0.216 1.216 15 C -0.001 4.001 16 C -0.056 4.056 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.166 4.166 20 C -0.168 4.168 21 C -0.114 4.114 22 C 0.113 3.887 23 F -0.102 7.102 24 C -0.211 4.211 25 C 0.086 3.914 26 F -0.118 7.118 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.189 0.811 35 H 0.046 0.954 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.191 0.809 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.954 -4.400 -7.012 9.174 hybrid contribution -0.129 0.391 0.318 0.520 sum -4.083 -4.010 -6.694 8.807 Atomic orbital electron populations 1.20668 0.90259 1.03235 1.02385 1.19905 0.96971 0.91838 1.04646 1.20671 0.92653 0.97057 0.97315 1.21354 0.94630 0.97308 0.98738 1.19803 0.95699 0.90156 0.89303 1.44220 1.13949 1.63065 1.08325 1.19603 0.95257 1.24525 0.94547 0.90453 1.24709 0.96555 1.01486 0.98399 1.69106 1.14710 1.49432 1.22379 0.85909 0.78663 0.79761 0.80688 1.20658 1.21756 1.21562 1.21886 0.79566 0.89957 1.08641 1.20918 0.95305 0.97748 0.91660 1.21133 0.98319 0.99067 0.96711 1.20840 0.99723 0.97446 0.98385 1.20871 1.01389 0.99585 0.94711 1.21288 0.99633 1.00373 0.95506 1.22913 0.92220 0.91617 1.04656 1.17133 0.77234 0.93057 1.01245 1.91457 1.28379 1.97064 1.93337 1.20900 0.93117 0.98661 1.08462 1.16999 0.88991 0.80882 1.04528 1.91453 1.80138 1.46148 1.94110 0.91147 0.91481 0.90891 0.84502 0.92503 0.92025 0.93474 0.81125 0.95423 0.88104 0.88163 0.88268 0.88072 0.80916 0.84235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.83 36.01 0.35 -0.85 16 2 C -0.13 -1.88 5.89 -104.54 -0.62 -2.49 16 3 C -0.06 -0.88 9.32 -39.60 -0.37 -1.25 16 4 C -0.12 -2.02 5.47 -104.55 -0.57 -2.59 16 5 C 0.18 3.42 5.54 -5.19 -0.03 3.39 16 6 N -0.58 -13.20 2.50 -175.98 -0.44 -13.64 16 7 C -0.21 -5.18 9.82 -15.06 -0.15 -5.33 16 8 H 0.08 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.02 -0.50 5.45 -17.43 -0.09 -0.60 16 10 N -0.90 -22.66 5.73 55.49 0.32 -22.34 16 11 Si 0.92 20.41 29.56 -169.99 -5.02 15.39 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.12 2.87 5.28 -5.19 -0.03 2.84 16 16 C -0.05 -1.22 5.46 -104.62 -0.57 -1.79 16 17 C -0.13 -2.73 9.35 -39.58 -0.37 -3.10 16 18 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 19 C -0.15 -2.75 10.05 -39.59 -0.40 -3.15 16 20 C -0.15 -3.03 10.05 -39.58 -0.40 -3.42 16 21 C -0.10 -2.18 9.21 -39.58 -0.36 -2.54 16 22 C 0.13 2.32 7.24 -39.43 -0.29 2.03 16 23 F -0.12 -2.29 13.81 2.25 0.03 -2.26 16 24 C -0.19 -2.96 10.01 -39.45 -0.39 -3.36 16 25 C 0.11 1.58 7.24 -39.43 -0.29 1.29 16 26 F -0.14 -2.01 16.48 2.25 0.04 -1.97 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.72 7.64 -51.93 -0.40 0.33 16 29 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.14 1.85 8.00 -52.49 -0.42 1.43 16 31 H 0.06 1.08 6.99 -51.93 -0.36 0.71 16 32 H 0.06 1.12 7.85 -51.93 -0.41 0.71 16 33 H 0.25 6.16 8.08 -40.82 -0.33 5.83 16 34 H 0.17 4.45 4.56 -82.02 -0.37 4.08 16 35 H 0.03 0.63 4.91 -51.93 -0.25 0.37 16 36 H 0.10 1.94 7.43 -52.49 -0.39 1.55 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.18 4.19 4.55 -52.68 -0.24 3.95 16 41 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -25.86 340.92 -9.82 -35.68 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.92 Total: 8.06 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -4.97 Total: -24.05 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.12 Total: -35.98 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.07 Total: -4.24 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -25.86 -9.82 -35.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232786587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.699 kcal (2) G-P(sol) polarization free energy of solvation -25.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds