Wall clock time and date at job start Tue Mar 31 2020 11:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.98619 * 2 1 4 4 C 1.38185 * 120.04822 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.98656 * 179.74037 * 4 3 2 6 6 N 1.46507 * 109.47107 * 104.99602 * 5 4 3 7 7 C 1.36937 * 119.99987 * 270.00191 * 6 5 4 8 8 H 1.08001 * 120.00226 * 5.77617 * 7 6 5 9 9 C 1.38813 * 119.99592 * 185.77345 * 7 6 5 10 10 N 1.31615 * 120.00171 * 355.03027 * 9 7 6 11 11 Si 1.86807 * 119.99702 * 175.02828 * 9 7 6 12 12 H 1.48499 * 109.47008 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46864 * 120.00179 * 11 9 7 14 14 H 1.48497 * 109.46951 * 240.00122 * 11 9 7 15 15 C 1.46499 * 119.99782 * 90.00275 * 6 5 4 16 16 C 1.50700 * 109.47288 * 85.45520 * 15 6 5 17 17 C 1.38234 * 120.00367 * 275.00276 * 16 15 6 18 18 C 1.38237 * 120.00004 * 179.76782 * 17 16 15 19 19 C 1.38238 * 119.99551 * 0.49916 * 18 17 16 20 20 C 1.38226 * 120.00459 * 359.75197 * 19 18 17 21 21 C 1.38238 * 119.99322 * 95.26975 * 16 15 6 22 22 C 1.38494 * 120.02902 * 0.02562 * 4 3 2 23 23 F 1.35100 * 120.01735 * 179.97438 * 22 4 3 24 24 C 1.38399 * 119.97313 * 359.97438 * 22 4 3 25 25 C 1.38444 * 119.95009 * 0.02562 * 24 22 4 26 26 F 1.35100 * 120.01152 * 179.97438 * 25 24 22 27 27 H 1.08994 * 109.47130 * 90.00177 * 1 2 3 28 28 H 1.09002 * 109.46891 * 210.00408 * 1 2 3 29 29 H 1.09004 * 109.47121 * 330.00129 * 1 2 3 30 30 H 1.07998 * 119.97447 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47332 * 225.00035 * 5 4 3 32 32 H 1.09006 * 109.47212 * 344.99898 * 5 4 3 33 33 H 0.97005 * 119.99763 * 179.97438 * 10 9 7 34 34 H 1.08996 * 109.47249 * 205.46117 * 15 6 5 35 35 H 1.09006 * 109.46832 * 325.45633 * 15 6 5 36 36 H 1.07998 * 119.99535 * 359.97438 * 17 16 15 37 37 H 1.07997 * 120.00258 * 180.22927 * 18 17 16 38 38 H 1.08003 * 119.99604 * 179.72808 * 19 18 17 39 39 H 1.08000 * 120.00287 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00348 * 0.02562 * 21 16 15 41 41 H 1.08000 * 120.02818 * 180.02562 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1973 0.0000 4 6 3.5797 1.1988 0.0005 5 6 4.3315 2.5049 -0.0054 6 7 4.8844 2.7562 1.3279 7 6 4.1498 3.4465 2.2547 8 1 3.1292 3.7244 2.0367 9 6 4.7170 3.7890 3.4745 10 7 5.9256 3.3668 3.7800 11 14 3.7648 4.8491 4.6825 12 1 2.4398 5.1893 4.1049 13 1 3.5741 4.1030 5.9523 14 1 4.5236 6.0970 4.9508 15 6 6.2231 2.2690 1.6695 16 6 7.2529 3.2740 1.2219 17 6 7.7210 3.2517 -0.0786 18 6 8.6621 4.1767 -0.4904 19 6 9.1426 5.1176 0.4012 20 6 8.6783 5.1367 1.7030 21 6 7.7334 4.2149 2.1134 22 6 4.2741 0.0005 0.0005 23 9 5.6251 0.0023 0.0005 24 6 3.5835 -1.1988 0.0005 25 6 2.1990 -1.1992 0.0000 26 9 1.5236 -2.3692 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6573 2.1323 -0.0004 31 1 5.1428 2.4539 -0.7315 32 1 3.6526 3.3138 -0.2755 33 1 6.3221 3.6065 4.6323 34 1 6.2951 2.1307 2.7482 35 1 6.4022 1.3175 1.1685 36 1 7.3490 2.5136 -0.7737 37 1 9.0251 4.1616 -1.5074 38 1 9.8811 5.8375 0.0806 39 1 9.0541 5.8715 2.3996 40 1 7.3711 4.2294 3.1308 41 1 4.1241 -2.1338 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232786587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:46 Heat of formation + Delta-G solvation = -9.331089 kcal Electronic energy + Delta-G solvation = -26602.860710 eV Core-core repulsion = 22698.615753 eV Total energy + Delta-G solvation = -3904.244957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.98123 -49.95140 -40.18890 -39.72172 -37.38135 -34.18894 -33.29666 -32.50500 -31.40145 -31.14046 -27.80560 -27.26618 -27.06981 -24.16652 -23.58710 -23.01291 -21.94300 -21.14778 -19.17388 -18.97279 -18.20000 -17.34343 -17.25929 -16.77571 -16.35533 -16.31205 -16.18645 -15.78448 -15.59737 -15.32753 -15.07688 -15.05368 -14.66881 -14.22298 -14.13251 -13.96977 -13.74258 -13.33882 -13.23606 -12.92966 -12.81672 -12.71990 -12.60387 -12.32138 -12.22328 -12.00368 -11.88672 -11.82701 -11.55809 -11.12387 -10.62542 -9.91956 -9.48806 -9.42002 -9.20752 -8.71582 -7.39541 -5.18036 0.02629 0.08932 0.80047 0.91674 1.52129 1.55104 1.61558 2.37241 2.57915 2.94845 3.22438 3.34081 3.52677 3.64510 3.77190 3.89506 4.01186 4.18551 4.29606 4.33840 4.49635 4.50609 4.61484 4.71269 4.78927 4.81215 4.89354 4.96060 5.00506 5.03889 5.09965 5.23518 5.26642 5.29234 5.41811 5.50699 5.57667 5.72175 5.86272 5.87342 5.95610 6.12973 6.40888 6.55426 6.77586 7.35265 7.94356 8.28906 9.24076 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.004990 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.424021 B = 5609.799996 C = 7117.364632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.125 4.125 3 C -0.059 4.059 4 C -0.130 4.130 5 C 0.180 3.820 6 N -0.589 5.589 7 C -0.221 4.221 8 H 0.082 0.918 9 C -0.063 4.063 10 N -0.913 5.913 11 Si 0.969 3.031 12 H -0.272 1.272 13 H -0.298 1.298 14 H -0.298 1.298 15 C 0.129 3.871 16 C -0.074 4.074 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.156 4.156 21 C -0.125 4.125 22 C 0.110 3.890 23 F -0.137 7.137 24 C -0.191 4.191 25 C 0.103 3.897 26 F -0.135 7.135 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.245 0.755 34 H 0.146 0.854 35 H 0.027 0.973 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.155 0.845 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -4.054 -8.697 10.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.078 4.078 4 C -0.134 4.134 5 C 0.054 3.946 6 N -0.307 5.307 7 C -0.350 4.350 8 H 0.100 0.900 9 C -0.253 4.253 10 N -0.566 5.566 11 Si 0.800 3.200 12 H -0.197 1.197 13 H -0.226 1.226 14 H -0.225 1.225 15 C 0.005 3.995 16 C -0.077 4.077 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.174 4.174 21 C -0.144 4.144 22 C 0.090 3.910 23 F -0.116 7.116 24 C -0.210 4.210 25 C 0.083 3.917 26 F -0.113 7.113 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.172 0.828 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.161 0.839 35 H 0.045 0.955 36 H 0.125 0.875 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.171 0.829 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.853 -4.041 -8.541 10.622 hybrid contribution 0.135 0.219 0.719 0.764 sum -4.718 -3.822 -7.822 9.902 Atomic orbital electron populations 1.20773 0.87689 1.04079 1.03949 1.20246 0.98780 0.90970 1.02587 1.20874 0.91795 0.98348 0.96735 1.21203 0.95564 0.96296 1.00350 1.19816 0.95837 0.91379 0.87568 1.44280 1.13865 1.63277 1.09302 1.19828 0.95578 1.24597 0.94995 0.90021 1.25306 0.97382 1.02796 0.99819 1.69382 1.15339 1.49798 1.22083 0.85121 0.77989 0.78020 0.78856 1.19700 1.22568 1.22515 1.21570 0.80573 0.90472 1.06908 1.20897 0.95901 0.98051 0.92836 1.21240 0.98937 0.99928 0.95939 1.21233 0.98421 0.96256 1.00030 1.21260 1.01316 0.99818 0.93737 1.21509 0.98974 1.00010 0.96910 1.22803 0.94136 0.93344 1.04099 1.17348 0.76865 0.93895 1.02879 1.91411 1.29354 1.97148 1.93650 1.21048 0.93624 0.98647 1.07719 1.17108 0.88872 0.81419 1.04282 1.91468 1.79921 1.45902 1.94028 0.89096 0.91056 0.89661 0.82763 0.92807 0.91236 0.94209 0.83856 0.95522 0.87474 0.84746 0.84656 0.86342 0.82896 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.83 71.24 0.70 -1.35 16 2 C -0.12 -3.26 5.89 -19.81 -0.12 -3.38 16 3 C -0.06 -1.70 9.32 22.26 0.21 -1.49 16 4 C -0.13 -4.50 5.47 -19.82 -0.11 -4.61 16 5 C 0.18 6.96 5.54 85.63 0.47 7.44 16 6 N -0.59 -27.43 2.50 -710.67 -1.78 -29.20 16 7 C -0.22 -10.99 9.82 84.03 0.82 -10.17 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 C -0.06 -3.21 5.45 84.86 0.46 -2.74 16 10 N -0.91 -47.67 5.73 21.65 0.12 -47.54 16 11 Si 0.97 42.63 29.56 68.60 2.03 44.66 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 14 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 15 C 0.13 6.24 5.28 85.63 0.45 6.69 16 16 C -0.07 -3.43 5.46 -19.87 -0.11 -3.54 16 17 C -0.14 -5.72 9.35 22.27 0.21 -5.51 16 18 C -0.14 -4.96 10.05 22.27 0.22 -4.74 16 19 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 20 C -0.16 -6.17 10.05 22.27 0.22 -5.94 16 21 C -0.13 -5.83 9.21 22.27 0.21 -5.62 16 22 C 0.11 3.84 7.24 22.37 0.16 4.00 16 23 F -0.14 -5.21 13.81 44.97 0.62 -4.59 16 24 C -0.19 -5.75 10.01 22.36 0.22 -5.53 16 25 C 0.10 2.89 7.24 22.37 0.16 3.06 16 26 F -0.13 -3.59 16.48 44.97 0.74 -2.84 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.32 7.64 -2.39 -0.02 1.30 16 29 H 0.08 1.43 8.09 -2.38 -0.02 1.42 16 30 H 0.15 3.84 8.00 -2.91 -0.02 3.82 16 31 H 0.05 2.06 6.99 -2.39 -0.02 2.05 16 32 H 0.07 2.50 7.85 -2.38 -0.02 2.48 16 33 H 0.25 12.57 8.08 -92.70 -0.75 11.82 16 34 H 0.15 7.88 4.56 -61.80 -0.28 7.59 16 35 H 0.03 1.26 4.91 -2.38 -0.01 1.25 16 36 H 0.11 4.09 7.43 -2.91 -0.02 4.07 16 37 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.15 7.76 4.55 -3.30 -0.02 7.74 16 41 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -56.35 340.92 6.97 -49.38 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.81 Total: 28.33 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 4.42 Total: -38.19 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.65 Total: -76.75 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 1.36 Total: -7.43 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -56.35 6.97 -49.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232786587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.049 kcal (2) G-P(sol) polarization free energy of solvation -56.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds