Wall clock time and date at job start Tue Mar 31 2020 11:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38209 * 119.97543 * 2 1 4 4 C 1.38469 * 120.02433 * 180.02562 * 3 2 1 5 5 F 1.35098 * 120.01095 * 180.02562 * 4 3 2 6 6 C 1.38427 * 119.97809 * 0.02562 * 4 3 2 7 7 C 1.50698 * 120.02578 * 179.97438 * 6 4 3 8 8 N 1.46507 * 109.46494 * 89.87242 * 7 6 4 9 9 C 1.36936 * 120.00052 * 242.92339 * 8 7 6 10 10 H 1.07996 * 119.99676 * 170.47666 * 9 8 7 11 11 C 1.38807 * 119.99976 * 350.48462 * 9 8 7 12 12 N 1.31621 * 120.00598 * 58.08121 * 11 9 8 13 13 Si 1.86800 * 119.99950 * 238.08457 * 11 9 8 14 14 H 1.48499 * 109.47188 * 59.99653 * 13 11 9 15 15 H 1.48502 * 109.47423 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47118 * 300.00163 * 13 11 9 17 17 C 1.46504 * 119.99821 * 62.93593 * 8 7 6 18 18 C 1.50692 * 109.47404 * 99.82518 * 17 8 7 19 19 C 1.38240 * 119.99948 * 266.97874 * 18 17 8 20 20 C 1.38233 * 120.00037 * 179.77200 * 19 18 17 21 21 C 1.38234 * 119.99738 * 0.49803 * 20 19 18 22 22 C 1.38232 * 120.00478 * 359.75273 * 21 20 19 23 23 C 1.38235 * 120.00254 * 87.25209 * 18 17 8 24 24 C 1.38421 * 119.94471 * 0.27209 * 6 4 3 25 25 F 1.35096 * 120.01063 * 179.70350 * 24 6 4 26 26 C 1.38210 * 119.97330 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47516 * 90.00110 * 1 2 3 28 28 H 1.09006 * 109.46982 * 209.99812 * 1 2 3 29 29 H 1.08999 * 109.47072 * 329.99878 * 1 2 3 30 30 H 1.08001 * 119.98557 * 0.04552 * 3 2 1 31 31 H 1.08993 * 109.47368 * 329.87560 * 7 6 4 32 32 H 1.09000 * 109.47093 * 209.87084 * 7 6 4 33 33 H 0.97002 * 120.00311 * 188.10216 * 12 11 9 34 34 H 1.09000 * 109.46523 * 219.82730 * 17 8 7 35 35 H 1.08996 * 109.47125 * 339.81854 * 17 8 7 36 36 H 1.08005 * 119.99579 * 359.97438 * 19 18 17 37 37 H 1.07999 * 120.00145 * 180.23412 * 20 19 18 38 38 H 1.08002 * 119.99986 * 179.73012 * 21 20 19 39 39 H 1.08001 * 120.00337 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.99697 * 359.97438 * 23 18 17 41 41 H 1.07996 * 119.98775 * 359.95675 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1972 0.0000 4 6 3.5822 1.1984 -0.0005 5 9 4.2569 2.3688 0.0000 6 6 4.2749 -0.0001 -0.0016 7 6 5.7819 0.0000 -0.0028 8 7 6.2712 0.0024 1.3782 9 6 7.0086 1.0592 1.8414 10 1 7.2384 1.1372 2.8938 11 6 7.4606 2.0302 0.9584 12 7 6.6007 2.7027 0.2231 13 14 9.2894 2.3824 0.8136 14 1 9.9984 1.1499 0.3853 15 1 9.5092 3.4537 -0.1910 16 1 9.8145 2.8230 2.1310 17 6 5.9717 -1.1259 2.2634 18 6 7.1661 -2.0421 2.3311 19 6 7.2606 -3.1194 1.4698 20 6 8.3585 -3.9572 1.5287 21 6 9.3570 -3.7237 2.4557 22 6 9.2601 -2.6496 3.3204 23 6 8.1646 -1.8088 3.2581 24 6 3.5822 -1.1985 -0.0078 25 9 4.2569 -2.3689 -0.0149 26 6 2.1975 -1.1973 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6569 2.1322 0.0007 31 1 6.1448 0.8890 -0.5184 32 1 6.1448 -0.8909 -0.5153 33 1 6.9193 3.2953 -0.4757 34 1 5.7424 -0.7533 3.2618 35 1 5.1141 -1.6749 1.8747 36 1 6.4780 -3.3044 0.7488 37 1 8.4341 -4.7965 0.8534 38 1 10.2128 -4.3808 2.5047 39 1 10.0401 -2.4675 4.0450 40 1 8.0889 -0.9696 3.9336 41 1 1.6569 -2.1322 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235196226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:36 Heat of formation + Delta-G solvation = -1.214028 kcal Electronic energy + Delta-G solvation = -26963.302117 eV Core-core repulsion = 23059.409143 eV Total energy + Delta-G solvation = -3903.892974 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.53327 -47.68955 -38.76682 -38.46166 -35.88244 -32.57864 -32.20099 -30.31313 -30.14949 -29.75992 -28.03098 -25.71133 -24.62202 -22.29477 -22.02301 -21.92492 -20.82966 -19.92857 -17.12888 -16.89031 -16.63959 -16.15493 -15.55037 -15.32931 -14.84585 -14.64777 -14.52753 -14.44156 -14.26198 -13.73984 -13.55310 -13.38751 -13.22942 -13.09742 -12.82290 -12.72382 -12.34241 -12.00284 -11.78955 -11.68791 -11.48175 -11.18539 -10.89496 -10.78720 -10.76358 -10.48548 -10.38483 -10.23580 -10.14391 -9.81727 -8.34032 -8.33122 -8.17167 -8.04917 -7.94560 -7.29119 -6.16532 -2.98344 1.47486 1.57121 1.97559 1.99463 3.45135 3.58276 3.68346 3.85081 4.33507 4.49611 4.61768 4.90550 4.92638 5.02240 5.29230 5.39178 5.42051 5.43140 5.53695 5.55522 5.59395 5.61871 5.65591 5.76480 5.84641 6.01386 6.12594 6.24857 6.26679 6.30064 6.46858 6.57911 6.59265 6.63511 6.66897 6.73618 6.90896 7.02412 7.07508 7.21142 7.36641 7.45847 7.61382 7.81412 8.06306 8.96243 9.72257 10.22092 10.81574 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.006152 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.519599 B = 4550.112913 C = 6516.785112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.050 4.050 3 C -0.185 4.185 4 C 0.162 3.838 5 F -0.079 7.079 6 C -0.163 4.163 7 C 0.170 3.830 8 N -0.569 5.569 9 C -0.297 4.297 10 H 0.083 0.917 11 C 0.055 3.945 12 N -0.799 5.799 13 Si 0.799 3.201 14 H -0.284 1.284 15 H -0.294 1.294 16 H -0.281 1.281 17 C 0.181 3.819 18 C -0.073 4.073 19 C -0.113 4.113 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.097 4.097 24 C 0.121 3.879 25 F -0.137 7.137 26 C -0.183 4.183 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.029 0.971 33 H 0.258 0.742 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 -8.313 -0.241 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.051 4.051 3 C -0.205 4.205 4 C 0.141 3.859 5 F -0.057 7.057 6 C -0.167 4.167 7 C 0.044 3.956 8 N -0.287 5.287 9 C -0.420 4.420 10 H 0.101 0.899 11 C -0.149 4.149 12 N -0.435 5.435 13 Si 0.622 3.378 14 H -0.211 1.211 15 H -0.221 1.221 16 H -0.207 1.207 17 C 0.055 3.945 18 C -0.076 4.076 19 C -0.132 4.132 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.116 4.116 24 C 0.101 3.899 25 F -0.115 7.115 26 C -0.202 4.202 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.337 -8.026 -0.261 11.576 hybrid contribution 1.445 0.167 -0.199 1.468 sum -6.893 -7.860 -0.460 10.464 Atomic orbital electron populations 1.20734 0.90699 1.02769 1.02277 1.19300 0.95809 0.91601 0.98403 1.21065 0.92775 0.98816 1.07811 1.17414 0.88900 0.82890 0.96697 1.91856 1.79114 1.42800 1.91913 1.21139 1.01317 0.90491 1.03801 1.20346 0.84438 1.02974 0.87859 1.44129 1.59911 1.16464 1.08202 1.18798 1.26374 1.02681 0.94182 0.89896 1.24539 0.97294 0.94620 0.98425 1.70954 1.33828 1.18739 1.19975 0.87768 0.94958 0.77202 0.77870 1.21146 1.22061 1.20676 1.19797 0.92157 0.87744 0.94824 1.20885 0.98634 0.94197 0.93863 1.21052 0.98081 0.95178 0.98880 1.21001 0.94878 0.99806 0.99014 1.20936 0.98878 0.98573 0.97258 1.21058 0.98126 0.95813 0.99599 1.21031 0.93661 0.98150 0.98770 1.17281 0.89385 0.80882 1.02346 1.91433 1.80567 1.45780 1.93770 1.20799 0.92078 0.98811 1.08502 0.91116 0.91519 0.91389 0.85187 0.86280 0.95327 0.93162 0.93426 0.92603 0.86661 0.87112 0.87215 0.87026 0.86420 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.05 -0.71 5.88 -104.64 -0.62 -1.32 16 3 C -0.19 -3.01 9.68 -39.51 -0.38 -3.39 16 4 C 0.16 3.26 7.24 -39.43 -0.29 2.97 16 5 F -0.08 -1.84 13.58 2.25 0.03 -1.81 16 6 C -0.16 -3.31 5.07 -104.49 -0.53 -3.84 16 7 C 0.17 3.90 5.37 -5.19 -0.03 3.87 16 8 N -0.57 -13.49 2.66 -175.99 -0.47 -13.96 16 9 C -0.30 -7.77 9.47 -15.06 -0.14 -7.91 16 10 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 11 C 0.06 1.47 4.40 -17.43 -0.08 1.39 16 12 N -0.80 -21.25 8.80 55.49 0.49 -20.76 16 13 Si 0.80 20.15 29.70 -169.99 -5.05 15.10 16 14 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 15 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 16 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 17 C 0.18 3.76 5.65 -5.20 -0.03 3.73 16 18 C -0.07 -1.43 5.36 -104.63 -0.56 -1.99 16 19 C -0.11 -2.05 9.69 -39.58 -0.38 -2.44 16 20 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 21 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 23 C -0.10 -1.83 9.71 -39.58 -0.38 -2.21 16 24 C 0.12 2.16 6.29 -39.43 -0.25 1.91 16 25 F -0.14 -2.42 14.45 2.25 0.03 -2.39 16 26 C -0.18 -2.73 9.68 -39.50 -0.38 -3.11 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.12 3.03 4.59 -51.93 -0.24 2.79 16 32 H 0.03 0.65 7.63 -51.93 -0.40 0.25 16 33 H 0.26 6.68 8.33 -40.82 -0.34 6.34 16 34 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.06 1.10 5.01 -51.93 -0.26 0.84 16 36 H 0.12 2.02 7.47 -52.48 -0.39 1.63 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 41 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -28.16 345.98 -9.70 -37.85 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.06 Total: 1.43 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -4.88 Total: -20.67 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.02 Total: -34.72 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.06 Total: -4.20 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.05 Total: 15.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.16 -9.70 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235196226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.638 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds