Wall clock time and date at job start Tue Mar 31 2020 11:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38209 * 119.97543 * 2 1 4 4 C 1.38469 * 120.02433 * 180.02562 * 3 2 1 5 5 F 1.35098 * 120.01095 * 180.02562 * 4 3 2 6 6 C 1.38427 * 119.97809 * 0.02562 * 4 3 2 7 7 C 1.50698 * 120.02578 * 179.97438 * 6 4 3 8 8 N 1.46507 * 109.46494 * 89.87242 * 7 6 4 9 9 C 1.36936 * 120.00052 * 242.92339 * 8 7 6 10 10 H 1.07996 * 119.99676 * 170.47666 * 9 8 7 11 11 C 1.38807 * 119.99976 * 350.48462 * 9 8 7 12 12 N 1.31621 * 120.00598 * 58.08121 * 11 9 8 13 13 Si 1.86800 * 119.99950 * 238.08457 * 11 9 8 14 14 H 1.48499 * 109.47188 * 59.99653 * 13 11 9 15 15 H 1.48502 * 109.47423 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47118 * 300.00163 * 13 11 9 17 17 C 1.46504 * 119.99821 * 62.93593 * 8 7 6 18 18 C 1.50692 * 109.47404 * 99.82518 * 17 8 7 19 19 C 1.38240 * 119.99948 * 266.97874 * 18 17 8 20 20 C 1.38233 * 120.00037 * 179.77200 * 19 18 17 21 21 C 1.38234 * 119.99738 * 0.49803 * 20 19 18 22 22 C 1.38232 * 120.00478 * 359.75273 * 21 20 19 23 23 C 1.38235 * 120.00254 * 87.25209 * 18 17 8 24 24 C 1.38421 * 119.94471 * 0.27209 * 6 4 3 25 25 F 1.35096 * 120.01063 * 179.70350 * 24 6 4 26 26 C 1.38210 * 119.97330 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47516 * 90.00110 * 1 2 3 28 28 H 1.09006 * 109.46982 * 209.99812 * 1 2 3 29 29 H 1.08999 * 109.47072 * 329.99878 * 1 2 3 30 30 H 1.08001 * 119.98557 * 0.04552 * 3 2 1 31 31 H 1.08993 * 109.47368 * 329.87560 * 7 6 4 32 32 H 1.09000 * 109.47093 * 209.87084 * 7 6 4 33 33 H 0.97002 * 120.00311 * 188.10216 * 12 11 9 34 34 H 1.09000 * 109.46523 * 219.82730 * 17 8 7 35 35 H 1.08996 * 109.47125 * 339.81854 * 17 8 7 36 36 H 1.08005 * 119.99579 * 359.97438 * 19 18 17 37 37 H 1.07999 * 120.00145 * 180.23412 * 20 19 18 38 38 H 1.08002 * 119.99986 * 179.73012 * 21 20 19 39 39 H 1.08001 * 120.00337 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.99697 * 359.97438 * 23 18 17 41 41 H 1.07996 * 119.98775 * 359.95675 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1972 0.0000 4 6 3.5822 1.1984 -0.0005 5 9 4.2569 2.3688 0.0000 6 6 4.2749 -0.0001 -0.0016 7 6 5.7819 0.0000 -0.0028 8 7 6.2712 0.0024 1.3782 9 6 7.0086 1.0592 1.8414 10 1 7.2384 1.1372 2.8938 11 6 7.4606 2.0302 0.9584 12 7 6.6007 2.7027 0.2231 13 14 9.2894 2.3824 0.8136 14 1 9.9984 1.1499 0.3853 15 1 9.5092 3.4537 -0.1910 16 1 9.8145 2.8230 2.1310 17 6 5.9717 -1.1259 2.2634 18 6 7.1661 -2.0421 2.3311 19 6 7.2606 -3.1194 1.4698 20 6 8.3585 -3.9572 1.5287 21 6 9.3570 -3.7237 2.4557 22 6 9.2601 -2.6496 3.3204 23 6 8.1646 -1.8088 3.2581 24 6 3.5822 -1.1985 -0.0078 25 9 4.2569 -2.3689 -0.0149 26 6 2.1975 -1.1973 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6569 2.1322 0.0007 31 1 6.1448 0.8890 -0.5184 32 1 6.1448 -0.8909 -0.5153 33 1 6.9193 3.2953 -0.4757 34 1 5.7424 -0.7533 3.2618 35 1 5.1141 -1.6749 1.8747 36 1 6.4780 -3.3044 0.7488 37 1 8.4341 -4.7965 0.8534 38 1 10.2128 -4.3808 2.5047 39 1 10.0401 -2.4675 4.0450 40 1 8.0889 -0.9696 3.9336 41 1 1.6569 -2.1322 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235196226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:36 Heat of formation + Delta-G solvation = -12.529627 kcal Electronic energy + Delta-G solvation = -26963.792799 eV Core-core repulsion = 23059.409143 eV Total energy + Delta-G solvation = -3904.383656 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.92553 -49.29894 -40.17708 -39.78420 -37.57389 -34.11009 -33.83447 -31.68476 -31.65981 -31.08763 -29.39100 -27.42617 -26.10497 -23.65706 -23.63966 -23.28792 -22.19487 -21.49041 -18.94258 -18.27916 -18.11404 -17.52132 -17.02439 -16.81146 -16.43233 -16.28654 -15.95799 -15.92333 -15.81955 -15.57022 -15.05394 -15.02457 -14.46571 -14.23478 -14.15088 -13.83614 -13.73623 -13.71034 -13.43432 -12.95161 -12.85886 -12.65169 -12.58588 -12.46664 -12.23389 -12.12521 -12.03594 -11.86799 -11.74976 -11.65336 -10.10048 -9.69537 -9.57689 -9.52659 -9.47065 -9.15731 -8.16604 -4.99488 0.13736 0.22320 0.60527 0.62930 1.38791 1.50714 1.59014 2.46268 2.56704 2.84629 3.04352 3.17164 3.65494 3.81024 3.83104 3.94616 4.04101 4.08330 4.18403 4.27324 4.31046 4.37260 4.49532 4.66814 4.73228 4.75578 4.84530 4.87893 4.91891 4.95658 5.10501 5.22898 5.23794 5.28581 5.30174 5.34539 5.45168 5.51208 5.68785 5.70164 5.73502 5.92788 6.06078 6.11241 6.26932 6.99004 7.77995 8.27354 8.79040 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.006152 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.519599 B = 4550.112913 C = 6516.785112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.033 4.033 3 C -0.181 4.181 4 C 0.127 3.873 5 F -0.108 7.108 6 C -0.188 4.188 7 C 0.177 3.823 8 N -0.581 5.581 9 C -0.295 4.295 10 H 0.071 0.929 11 C 0.025 3.975 12 N -0.809 5.809 13 Si 0.836 3.164 14 H -0.301 1.301 15 H -0.296 1.296 16 H -0.282 1.282 17 C 0.187 3.813 18 C -0.095 4.095 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.119 4.119 24 C 0.114 3.886 25 F -0.139 7.139 26 C -0.170 4.170 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.090 0.910 32 H 0.022 0.978 33 H 0.255 0.745 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.108 0.892 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 -10.587 -0.318 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.033 4.033 3 C -0.200 4.200 4 C 0.107 3.893 5 F -0.086 7.086 6 C -0.192 4.192 7 C 0.051 3.949 8 N -0.301 5.301 9 C -0.420 4.420 10 H 0.089 0.911 11 C -0.178 4.178 12 N -0.447 5.447 13 Si 0.662 3.338 14 H -0.230 1.230 15 H -0.223 1.223 16 H -0.208 1.208 17 C 0.061 3.939 18 C -0.098 4.098 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.138 4.138 24 C 0.094 3.906 25 F -0.118 7.118 26 C -0.189 4.189 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.169 0.831 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.126 0.874 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.092 -10.314 -0.333 14.434 hybrid contribution 1.877 0.731 -0.182 2.023 sum -8.214 -9.583 -0.515 12.632 Atomic orbital electron populations 1.20870 0.86855 1.04502 1.04073 1.19860 0.98262 0.90202 0.95019 1.21348 0.91070 1.00902 1.06662 1.17833 0.90533 0.81924 0.99024 1.91770 1.80053 1.44205 1.92604 1.20883 0.99721 0.92026 1.06590 1.19999 0.86699 1.01028 0.87153 1.44161 1.60671 1.16698 1.08547 1.18815 1.26728 1.02809 0.93661 0.91136 1.24798 0.98475 0.95265 0.99265 1.71033 1.33984 1.19206 1.20426 0.87126 0.93381 0.75985 0.77358 1.22966 1.22275 1.20834 1.19776 0.93218 0.87171 0.93708 1.20787 0.98531 0.95090 0.95387 1.21159 0.99184 0.95357 0.98736 1.21380 0.93942 0.99977 0.99283 1.21383 0.99578 0.98244 0.95947 1.21384 0.97787 0.95548 1.00253 1.21116 0.94754 0.98841 0.99098 1.17441 0.90582 0.79916 1.02684 1.91423 1.80924 1.45605 1.93821 1.21226 0.90650 1.00790 1.06239 0.89047 0.89423 0.90157 0.83121 0.89192 0.95980 0.93475 0.94356 0.91933 0.86651 0.84042 0.83610 0.84603 0.87421 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.24 0.71 -0.86 16 2 C -0.03 -0.81 5.88 -19.88 -0.12 -0.93 16 3 C -0.18 -5.59 9.68 22.32 0.22 -5.37 16 4 C 0.13 5.22 7.24 22.37 0.16 5.39 16 5 F -0.11 -5.27 13.58 44.97 0.61 -4.66 16 6 C -0.19 -7.83 5.07 -19.78 -0.10 -7.93 16 7 C 0.18 8.52 5.37 85.63 0.46 8.98 16 8 N -0.58 -28.80 2.66 -710.71 -1.89 -30.69 16 9 C -0.30 -16.18 9.47 84.03 0.80 -15.38 16 10 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 11 C 0.02 1.37 4.40 84.86 0.37 1.74 16 12 N -0.81 -45.07 8.80 21.65 0.19 -44.88 16 13 Si 0.84 43.04 29.70 68.60 2.04 45.08 16 14 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 15 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 16 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 17 C 0.19 8.03 5.65 85.63 0.48 8.52 16 18 C -0.10 -3.81 5.36 -19.87 -0.11 -3.92 16 19 C -0.13 -4.51 9.69 22.27 0.22 -4.29 16 20 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 21 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 22 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 23 C -0.12 -4.55 9.71 22.27 0.22 -4.33 16 24 C 0.11 3.96 6.29 22.37 0.14 4.10 16 25 F -0.14 -4.84 14.45 44.97 0.65 -4.19 16 26 C -0.17 -4.54 9.68 22.32 0.22 -4.32 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.01 8.09 -2.38 -0.02 0.99 16 29 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.09 4.87 4.59 -2.39 -0.01 4.85 16 32 H 0.02 1.05 7.63 -2.39 -0.02 1.04 16 33 H 0.26 13.84 8.33 -92.71 -0.77 13.06 16 34 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 35 H 0.06 2.54 5.01 -2.39 -0.01 2.52 16 36 H 0.12 4.03 7.47 -2.91 -0.02 4.01 16 37 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 38 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -64.43 345.98 6.98 -57.45 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.04 Total: 11.75 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 4.34 Total: -29.86 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.70 Total: -75.57 kcal Atomic # 9 Polarization: -10.11 SS G_CDS: 1.26 Total: -8.85 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.04 Total: 45.08 kcal Total: -64.43 6.98 -57.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235196226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.916 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds