Wall clock time and date at job start Tue Mar 31 2020 11:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38526 * 119.75355 * 2 1 4 4 C 1.38041 * 120.30829 * 179.97438 * 3 2 1 5 5 C 1.38527 * 120.10720 * 359.97438 * 4 3 2 6 6 O 1.35596 * 120.05937 * 179.97438 * 5 4 3 7 7 C 1.42896 * 116.99981 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47219 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99832 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99920 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99720 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47170 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99460 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00042 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99838 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99861 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47043 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47078 * 119.99894 * 16 14 12 19 19 H 1.48496 * 109.47448 * 240.00205 * 16 14 12 20 20 C 1.40939 * 119.88386 * 0.02562 * 5 4 3 21 21 C 1.37872 * 119.71916 * 180.02562 * 2 1 3 22 22 C 1.51010 * 130.59630 * 359.91498 * 21 2 1 23 23 H 1.09002 * 110.09440 * 60.86888 * 22 21 2 24 24 C 1.52995 * 110.09912 * 299.32684 * 22 21 2 25 25 C 1.53486 * 106.30475 * 180.09459 * 22 21 2 26 26 C 1.46819 * 130.04769 * 180.02562 * 20 5 4 27 27 O 1.21295 * 125.91709 * 359.97438 * 26 20 5 28 28 H 1.08995 * 109.47476 * 95.79633 * 1 2 3 29 29 H 1.09004 * 109.47045 * 215.80339 * 1 2 3 30 30 H 1.09000 * 109.47176 * 335.80150 * 1 2 3 31 31 H 1.08000 * 119.84095 * 359.96505 * 3 2 1 32 32 H 1.08008 * 119.94722 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.47547 * 300.00438 * 7 6 5 34 34 H 1.09008 * 109.46949 * 60.00019 * 7 6 5 35 35 H 0.97004 * 120.00098 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47555 * 299.99269 * 11 10 8 37 37 H 1.09002 * 109.47764 * 59.99450 * 11 10 8 38 38 H 0.97001 * 119.99821 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.47322 * 310.84414 * 24 22 21 40 40 H 1.09000 * 109.47185 * 190.84887 * 24 22 21 41 41 H 1.09004 * 109.47477 * 70.84476 * 24 22 21 42 42 H 1.08998 * 110.27205 * 118.99884 * 25 22 21 43 43 H 1.08997 * 110.27202 * 241.06520 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.2026 0.0000 4 6 3.5748 1.2160 0.0005 5 6 4.2812 0.0244 0.0016 6 8 5.6371 0.0387 0.0016 7 6 6.2724 1.3186 0.0010 8 6 7.7684 1.1369 0.0005 9 8 8.2437 0.0211 0.0001 10 7 8.5781 2.2144 0.0004 11 6 10.0324 2.0377 -0.0007 12 6 10.7024 3.3876 -0.0012 13 1 10.1047 4.2871 -0.0011 14 6 12.0785 3.4742 -0.0017 15 7 12.8063 2.3789 -0.0012 16 14 12.9090 5.1474 -0.0015 17 1 11.8749 6.2133 -0.0002 18 1 13.7566 5.2793 1.2107 19 1 13.7556 5.2800 -1.2143 20 6 3.5882 -1.2028 0.0016 21 6 2.1904 -1.1974 -0.0005 22 6 1.6818 -2.6192 0.0005 23 1 1.0853 -2.8042 -0.8928 24 6 0.8437 -2.8769 1.2543 25 6 2.9237 -3.5212 0.0016 26 6 4.1023 -2.5780 0.0031 27 8 5.2716 -2.9005 0.0043 28 1 -0.3634 -0.1038 -1.0223 29 1 -0.3633 -0.8335 0.6012 30 1 -0.3633 0.9374 0.4212 31 1 1.6478 2.1341 -0.0006 32 1 4.1049 2.1571 0.0009 33 1 5.9737 1.8722 -0.8891 34 1 5.9736 1.8729 0.8908 35 1 8.1979 3.1068 0.0003 36 1 10.3318 1.4835 0.8889 37 1 10.3306 1.4841 -0.8911 38 1 13.7744 2.4398 -0.0020 39 1 1.3897 -2.5338 2.1332 40 1 0.6439 -3.9446 1.3447 41 1 -0.0995 -2.3358 1.1785 42 1 2.9377 -4.1434 0.8964 43 1 2.9388 -4.1441 -0.8927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317971196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:58 Heat of formation + Delta-G solvation = -92.745139 kcal Electronic energy + Delta-G solvation = -25576.264830 eV Core-core repulsion = 21779.490284 eV Total energy + Delta-G solvation = -3796.774546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18550 -39.51673 -38.36924 -37.83802 -35.58679 -34.22807 -32.62739 -32.38424 -30.46129 -29.31315 -28.34745 -26.98788 -26.15381 -24.37943 -22.78941 -22.22075 -21.03926 -19.78712 -19.67347 -17.81715 -17.39799 -16.55778 -16.32203 -16.12778 -15.77389 -15.47576 -15.16971 -14.62056 -14.59444 -14.35274 -14.16647 -14.12076 -13.85360 -13.78166 -13.16534 -12.92771 -12.79203 -12.47958 -12.46009 -12.21344 -12.00862 -11.85660 -11.77586 -11.50238 -11.43109 -11.13058 -10.97496 -10.94591 -10.82067 -10.34042 -9.61690 -9.41208 -9.15101 -9.11764 -8.77561 -8.26770 -7.95791 -6.18522 -4.26095 0.49352 1.09878 2.33724 2.79188 3.21126 3.22524 3.29365 3.32302 3.45579 3.75040 4.06782 4.19111 4.33731 4.38024 4.52362 4.63233 4.70183 4.72281 4.82413 4.98110 5.06977 5.13727 5.14082 5.17332 5.17976 5.22734 5.33625 5.36286 5.42741 5.51333 5.59377 5.62588 5.76352 5.85134 5.91886 6.01600 6.22084 6.44375 7.15234 7.28053 7.36561 7.48478 7.59004 7.62603 7.93406 8.52370 8.73669 9.00346 9.40227 10.91698 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002418 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.273659 B =11576.116742 C =12525.436569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.131 4.131 3 C -0.040 4.040 4 C -0.227 4.227 5 C 0.198 3.802 6 O -0.268 6.268 7 C 0.035 3.965 8 C 0.498 3.502 9 O -0.524 6.524 10 N -0.708 5.708 11 C 0.251 3.749 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.063 3.937 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.222 4.222 21 C -0.006 4.006 22 C -0.051 4.051 23 H 0.097 0.903 24 C -0.147 4.147 25 C -0.168 4.168 26 C 0.401 3.599 27 O -0.421 6.421 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.391 0.609 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.342 -4.482 0.416 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.131 4.131 3 C -0.058 4.058 4 C -0.246 4.246 5 C 0.149 3.851 6 O -0.177 6.177 7 C -0.044 4.044 8 C 0.280 3.720 9 O -0.400 6.400 10 N -0.359 5.359 11 C 0.130 3.870 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.141 4.141 15 N -0.521 5.521 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.223 4.223 21 C -0.007 4.007 22 C -0.069 4.069 23 H 0.115 0.885 24 C -0.204 4.204 25 C -0.206 4.206 26 C 0.277 3.723 27 O -0.294 6.294 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.224 0.776 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.126 0.874 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -28.978 -5.716 0.423 29.539 hybrid contribution 0.332 1.806 -0.043 1.837 sum -28.646 -3.910 0.381 28.914 Atomic orbital electron populations 1.20851 0.90823 1.02978 1.02359 1.19167 0.96253 0.91294 1.06368 1.20964 0.93176 0.97529 0.94144 1.21229 0.95449 0.97054 1.10871 1.19254 0.82679 0.92766 0.90382 1.86294 1.15434 1.29991 1.86020 1.22766 0.93496 0.84760 1.03403 1.19827 0.86909 0.86152 0.79074 1.90761 1.76417 1.24152 1.48671 1.46337 1.09562 1.07083 1.72899 1.19174 0.72131 0.97591 0.98056 1.21232 0.91826 0.91751 1.53432 0.91763 1.24966 0.97173 0.97270 0.94669 1.69988 1.06030 1.27384 1.48690 0.86337 0.79432 0.83196 0.77784 1.19640 1.20768 1.20764 1.20420 0.94211 0.93718 1.13993 1.20199 0.91911 0.94725 0.93859 1.20365 0.96409 0.89614 1.00519 0.88467 1.21942 0.99781 1.02137 0.96548 1.22421 0.93746 0.98917 1.05482 1.22153 0.89470 0.88565 0.72159 1.90676 1.19925 1.83103 1.35659 0.91444 0.90967 0.91688 0.84971 0.84395 0.89146 0.89144 0.77613 0.95275 0.95286 0.92413 0.92012 0.91569 0.91468 0.87387 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.81 36.00 0.35 -0.25 16 2 C -0.13 -1.10 5.87 -104.65 -0.61 -1.71 16 3 C -0.04 -0.34 9.65 -39.55 -0.38 -0.72 16 4 C -0.23 -2.43 9.02 -39.55 -0.36 -2.79 16 5 C 0.20 2.85 6.75 -38.45 -0.26 2.59 16 6 O -0.27 -4.80 9.35 -39.38 -0.37 -5.17 16 7 C 0.03 0.52 5.22 36.01 0.19 0.71 16 8 C 0.50 10.48 7.91 -10.98 -0.09 10.39 16 9 O -0.52 -13.93 16.50 -14.35 -0.24 -14.17 16 10 N -0.71 -14.92 5.55 -61.47 -0.34 -15.26 16 11 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 12 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 13 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.88 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.22 -3.00 6.11 -104.83 -0.64 -3.64 16 21 C -0.01 -0.06 5.40 -104.03 -0.56 -0.62 16 22 C -0.05 -0.36 3.24 -91.37 -0.30 -0.65 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 24 C -0.15 -0.78 8.69 37.16 0.32 -0.45 16 25 C -0.17 -1.46 6.51 -27.51 -0.18 -1.64 16 26 C 0.40 5.77 7.71 -30.72 -0.24 5.53 16 27 O -0.42 -8.19 17.74 5.54 0.10 -8.09 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.32 5.02 -51.93 -0.26 0.06 16 30 H 0.06 0.28 8.04 -51.93 -0.42 -0.13 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.14 1.19 6.28 -52.48 -0.33 0.86 16 33 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 34 H 0.09 1.07 7.66 -51.92 -0.40 0.68 16 35 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.06 0.40 8.11 -51.93 -0.42 -0.03 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.28 5.57 -51.93 -0.29 -0.01 16 42 H 0.11 0.79 7.68 -51.93 -0.40 0.39 16 43 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -37.47 362.45 -8.61 -46.08 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.74 Total: 0.82 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -3.19 Total: 0.03 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.40 Total: -40.76 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.51 Total: -27.42 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.47 -8.61 -46.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317971196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.664 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds