Wall clock time and date at job start Tue Mar 31 2020 11:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48493 * 109.47295 * 270.00018 * 3 2 1 5 5 H 1.48506 * 109.47170 * 29.99959 * 3 2 1 6 6 H 1.48498 * 109.47105 * 149.99762 * 3 2 1 7 7 C 1.38630 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00421 * 359.97438 * 7 2 1 9 9 O 1.34819 * 119.99875 * 180.02562 * 7 2 1 10 10 C 1.35772 * 117.00130 * 185.28971 * 9 7 2 11 11 C 1.38912 * 119.99534 * 186.06156 * 10 9 7 12 12 C 1.37990 * 120.00373 * 180.23142 * 11 10 9 13 13 C 1.38955 * 119.99796 * 359.48919 * 12 11 10 14 14 N 1.39893 * 120.00638 * 180.23201 * 13 12 11 15 15 C 1.34782 * 119.99732 * 35.36514 * 14 13 12 16 16 O 1.21626 * 119.99944 * 355.37036 * 15 14 13 17 17 C 1.47060 * 119.99399 * 175.37683 * 15 14 13 18 18 C 1.33017 * 119.99499 * 186.65448 * 17 15 14 19 19 C 1.50697 * 120.00423 * 13.57657 * 18 17 15 20 20 C 1.53172 * 109.54473 * 248.74663 * 19 18 17 21 21 C 1.53090 * 109.16656 * 183.14899 * 20 19 18 22 22 O 1.42904 * 109.41403 * 57.60637 * 21 20 19 23 23 C 1.42909 * 114.09896 * 298.84258 * 22 21 20 24 24 C 1.53091 * 109.41294 * 61.15796 * 23 22 21 25 25 C 1.38942 * 119.98609 * 0.25572 * 13 12 11 26 26 C 1.37996 * 120.00127 * 359.97438 * 25 13 12 27 27 H 0.96995 * 120.00092 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.00284 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.00640 * 179.76755 * 12 11 10 30 30 H 0.96992 * 119.99919 * 215.36091 * 14 13 12 31 31 H 1.08000 * 120.00721 * 6.65541 * 17 15 14 32 32 H 1.08005 * 120.00333 * 193.57087 * 18 17 15 33 33 H 1.09000 * 109.54087 * 9.00973 * 19 18 17 34 34 H 1.09003 * 109.52341 * 303.05310 * 20 19 18 35 35 H 1.08997 * 109.52686 * 63.24349 * 20 19 18 36 36 H 1.08998 * 109.48161 * 297.62982 * 21 20 19 37 37 H 1.08998 * 109.48572 * 177.59293 * 21 20 19 38 38 H 1.09003 * 109.47812 * 301.17774 * 23 22 21 39 39 H 1.08996 * 109.47924 * 181.14023 * 23 22 21 40 40 H 1.09001 * 109.52431 * 182.48706 * 24 23 22 41 41 H 1.09001 * 109.57255 * 62.32428 * 24 23 22 42 42 H 1.08007 * 120.00241 * 180.02562 * 25 13 12 43 43 H 1.07998 * 120.00118 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3571 -1.2006 0.0000 10 6 3.9735 -2.4052 -0.1121 11 6 5.3547 -2.4923 0.0079 12 6 5.9818 -3.7157 -0.1108 13 6 5.2307 -4.8621 -0.3397 14 7 5.8659 -6.1032 -0.4552 15 6 6.9547 -6.3749 0.2913 16 8 7.4350 -5.5131 1.0025 17 6 7.5619 -7.7136 0.2457 18 6 8.5524 -8.0232 1.0778 19 6 8.8500 -7.1353 2.2585 20 6 10.1974 -6.4377 2.0482 21 6 10.5281 -5.5999 3.2861 22 8 10.5468 -6.4435 4.4395 23 6 9.2997 -7.0855 4.7131 24 6 8.9196 -7.9830 3.5325 25 6 3.8487 -4.7754 -0.4544 26 6 3.2223 -3.5512 -0.3405 27 1 -0.4850 0.8400 -0.0004 28 1 5.9382 -1.6018 0.1899 29 1 7.0560 -3.7829 -0.0212 30 1 5.5227 -6.7680 -1.0724 31 1 7.2037 -8.4452 -0.4634 32 1 9.1433 -8.9110 0.9073 33 1 8.0630 -6.3881 2.3603 34 1 10.9753 -7.1860 1.8964 35 1 10.1393 -5.7889 1.1743 36 1 9.7713 -4.8260 3.4141 37 1 11.5059 -5.1351 3.1599 38 1 8.5269 -6.3309 4.8596 39 1 9.3926 -7.6909 5.6147 40 1 7.9477 -8.4393 3.7199 41 1 9.6709 -8.7632 3.4102 42 1 3.2646 -5.6664 -0.6320 43 1 2.1481 -3.4839 -0.4292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318736737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:27 Heat of formation + Delta-G solvation = -57.029884 kcal Electronic energy + Delta-G solvation = -25689.808290 eV Core-core repulsion = 21894.582474 eV Total energy + Delta-G solvation = -3795.225816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51389 -39.45464 -38.79181 -36.86532 -35.18518 -34.04510 -32.36753 -31.71704 -31.23725 -30.32899 -28.30907 -25.74223 -25.03211 -23.69050 -22.87512 -22.35735 -20.79625 -20.46238 -19.68862 -17.97138 -17.45971 -17.12707 -16.68712 -16.13975 -16.10524 -15.23551 -14.93045 -14.77196 -14.54050 -14.24064 -13.97940 -13.87631 -13.82852 -13.64349 -13.30272 -12.82547 -12.57634 -12.36755 -12.30409 -12.26127 -11.94859 -11.68054 -11.52192 -11.36130 -11.11194 -10.92973 -10.77833 -10.41795 -10.20396 -9.79564 -9.73284 -9.52236 -9.43793 -9.10241 -8.77525 -8.31512 -7.07924 -6.43907 -4.09612 1.09571 2.05408 2.14539 3.19490 3.22256 3.25409 3.32698 3.40513 3.72899 4.22624 4.41184 4.45562 4.62167 4.71234 4.76235 4.86794 4.88730 5.06538 5.09261 5.11625 5.18865 5.36210 5.43476 5.46861 5.52646 5.67990 5.69226 5.71201 5.80256 5.91319 5.97015 6.02252 6.06837 6.08854 6.22605 6.49499 6.66292 6.73796 6.92276 7.04137 7.06856 7.20761 7.56086 7.63183 7.76167 8.00132 8.29974 8.91475 9.53954 10.63714 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002641 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.294426 B =10599.390499 C =11404.685687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.216 6.216 10 C 0.152 3.848 11 C -0.179 4.179 12 C -0.069 4.069 13 C 0.042 3.958 14 N -0.656 5.656 15 C 0.537 3.463 16 O -0.522 6.522 17 C -0.220 4.220 18 C -0.049 4.049 19 C -0.104 4.104 20 C -0.133 4.133 21 C 0.061 3.939 22 O -0.387 6.387 23 C 0.062 3.938 24 C -0.147 4.147 25 C -0.092 4.092 26 C -0.206 4.206 27 H 0.280 0.720 28 H 0.120 0.880 29 H 0.131 0.869 30 H 0.403 0.597 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.040 -17.445 1.847 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.121 6.121 10 C 0.100 3.900 11 C -0.199 4.199 12 C -0.089 4.089 13 C -0.051 4.051 14 N -0.299 5.299 15 C 0.327 3.673 16 O -0.401 6.401 17 C -0.241 4.241 18 C -0.069 4.069 19 C -0.122 4.122 20 C -0.170 4.170 21 C -0.016 4.016 22 O -0.306 6.306 23 C -0.015 4.015 24 C -0.185 4.185 25 C -0.112 4.112 26 C -0.226 4.226 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.149 0.851 30 H 0.238 0.762 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.410 -16.510 2.494 24.123 hybrid contribution -0.475 0.069 -0.719 0.865 sum 16.934 -16.442 1.775 23.670 Atomic orbital electron populations 1.69653 1.05577 1.28538 1.47963 1.24470 0.95032 0.98881 0.95632 0.86177 0.80393 0.81370 0.78973 1.19886 1.20767 1.18270 1.20751 0.76923 0.96604 1.52167 0.87674 1.83597 1.22559 1.25628 1.80295 1.19178 0.91651 0.85668 0.93521 1.20148 0.91848 0.97791 1.10100 1.20748 0.99690 0.90030 0.98460 1.17316 0.91147 0.84375 1.12227 1.43182 1.29026 1.15890 1.41820 1.18683 0.80267 0.88747 0.79554 1.90616 1.61632 1.48129 1.39757 1.22589 1.00765 0.96301 1.04463 1.23669 0.92612 0.98062 0.92572 1.21229 1.01062 0.98339 0.91563 1.21981 0.96133 0.99763 0.99166 1.22578 1.02131 0.92195 0.84657 1.87895 1.33268 1.63050 1.46398 1.22534 0.86454 0.95371 0.97131 1.22225 1.02063 0.98807 0.95392 1.20553 0.91861 0.97460 1.01314 1.21099 1.01167 0.91647 1.08705 0.91030 0.86167 0.85095 0.76229 0.85383 0.85987 0.84997 0.91902 0.90498 0.92573 0.89082 0.92906 0.89042 0.91035 0.91448 0.86914 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.96 55.48 0.77 -24.45 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.60 28.62 -169.99 -4.86 16.74 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.39 -10.85 9.90 30.88 0.31 -10.54 16 8 H 0.11 2.98 5.52 -52.49 -0.29 2.69 16 9 O -0.22 -5.66 8.58 0.01 0.00 -5.66 16 10 C 0.15 3.49 6.65 -39.08 -0.26 3.23 16 11 C -0.18 -3.64 9.98 -39.42 -0.39 -4.03 16 12 C -0.07 -1.27 8.69 -39.41 -0.34 -1.61 16 13 C 0.04 0.70 6.30 -83.65 -0.53 0.17 16 14 N -0.66 -8.29 5.33 -10.90 -0.06 -8.35 16 15 C 0.54 6.83 7.43 -12.68 -0.09 6.74 16 16 O -0.52 -8.10 10.58 5.25 0.06 -8.05 16 17 C -0.22 -1.97 10.01 -37.82 -0.38 -2.35 16 18 C -0.05 -0.42 8.84 -36.12 -0.32 -0.74 16 19 C -0.10 -1.06 1.79 -91.59 -0.16 -1.22 16 20 C -0.13 -1.31 5.33 -26.60 -0.14 -1.46 16 21 C 0.06 0.63 6.84 37.20 0.25 0.89 16 22 O -0.39 -4.43 10.77 -35.23 -0.38 -4.81 16 23 C 0.06 0.59 6.84 37.20 0.25 0.85 16 24 C -0.15 -1.29 5.41 -26.59 -0.14 -1.43 16 25 C -0.09 -1.59 9.96 -39.41 -0.39 -1.98 16 26 C -0.21 -4.33 9.13 -39.42 -0.36 -4.69 16 27 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 29 H 0.13 2.30 6.23 -52.48 -0.33 1.97 16 30 H 0.40 3.69 8.80 -40.82 -0.36 3.33 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.13 1.74 4.76 -53.11 -0.25 1.48 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.14 2.99 5.70 -52.49 -0.30 2.69 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -31.22 354.45 -7.66 -38.88 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.74 Total: 6.87 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.80 Total: -16.51 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.72 Total: -32.80 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.32 Total: -18.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.86 Total: 16.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.22 -7.66 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318736737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.147 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds