Wall clock time and date at job start Tue Mar 31 2020 11:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48493 * 109.47295 * 270.00018 * 3 2 1 5 5 H 1.48506 * 109.47170 * 29.99959 * 3 2 1 6 6 H 1.48498 * 109.47105 * 149.99762 * 3 2 1 7 7 C 1.38630 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00421 * 359.97438 * 7 2 1 9 9 O 1.34819 * 119.99875 * 180.02562 * 7 2 1 10 10 C 1.35772 * 117.00130 * 185.28971 * 9 7 2 11 11 C 1.38912 * 119.99534 * 186.06156 * 10 9 7 12 12 C 1.37990 * 120.00373 * 180.23142 * 11 10 9 13 13 C 1.38955 * 119.99796 * 359.48919 * 12 11 10 14 14 N 1.39893 * 120.00638 * 180.23201 * 13 12 11 15 15 C 1.34782 * 119.99732 * 35.36514 * 14 13 12 16 16 O 1.21626 * 119.99944 * 355.37036 * 15 14 13 17 17 C 1.47060 * 119.99399 * 175.37683 * 15 14 13 18 18 C 1.33017 * 119.99499 * 186.65448 * 17 15 14 19 19 C 1.50697 * 120.00423 * 13.57657 * 18 17 15 20 20 C 1.53172 * 109.54473 * 248.74663 * 19 18 17 21 21 C 1.53090 * 109.16656 * 183.14899 * 20 19 18 22 22 O 1.42904 * 109.41403 * 57.60637 * 21 20 19 23 23 C 1.42909 * 114.09896 * 298.84258 * 22 21 20 24 24 C 1.53091 * 109.41294 * 61.15796 * 23 22 21 25 25 C 1.38942 * 119.98609 * 0.25572 * 13 12 11 26 26 C 1.37996 * 120.00127 * 359.97438 * 25 13 12 27 27 H 0.96995 * 120.00092 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.00284 * 359.97438 * 11 10 9 29 29 H 1.08004 * 120.00640 * 179.76755 * 12 11 10 30 30 H 0.96992 * 119.99919 * 215.36091 * 14 13 12 31 31 H 1.08000 * 120.00721 * 6.65541 * 17 15 14 32 32 H 1.08005 * 120.00333 * 193.57087 * 18 17 15 33 33 H 1.09000 * 109.54087 * 9.00973 * 19 18 17 34 34 H 1.09003 * 109.52341 * 303.05310 * 20 19 18 35 35 H 1.08997 * 109.52686 * 63.24349 * 20 19 18 36 36 H 1.08998 * 109.48161 * 297.62982 * 21 20 19 37 37 H 1.08998 * 109.48572 * 177.59293 * 21 20 19 38 38 H 1.09003 * 109.47812 * 301.17774 * 23 22 21 39 39 H 1.08996 * 109.47924 * 181.14023 * 23 22 21 40 40 H 1.09001 * 109.52431 * 182.48706 * 24 23 22 41 41 H 1.09001 * 109.57255 * 62.32428 * 24 23 22 42 42 H 1.08007 * 120.00241 * 180.02562 * 25 13 12 43 43 H 1.07998 * 120.00118 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3571 -1.2006 0.0000 10 6 3.9735 -2.4052 -0.1121 11 6 5.3547 -2.4923 0.0079 12 6 5.9818 -3.7157 -0.1108 13 6 5.2307 -4.8621 -0.3397 14 7 5.8659 -6.1032 -0.4552 15 6 6.9547 -6.3749 0.2913 16 8 7.4350 -5.5131 1.0025 17 6 7.5619 -7.7136 0.2457 18 6 8.5524 -8.0232 1.0778 19 6 8.8500 -7.1353 2.2585 20 6 10.1974 -6.4377 2.0482 21 6 10.5281 -5.5999 3.2861 22 8 10.5468 -6.4435 4.4395 23 6 9.2997 -7.0855 4.7131 24 6 8.9196 -7.9830 3.5325 25 6 3.8487 -4.7754 -0.4544 26 6 3.2223 -3.5512 -0.3405 27 1 -0.4850 0.8400 -0.0004 28 1 5.9382 -1.6018 0.1899 29 1 7.0560 -3.7829 -0.0212 30 1 5.5227 -6.7680 -1.0724 31 1 7.2037 -8.4452 -0.4634 32 1 9.1433 -8.9110 0.9073 33 1 8.0630 -6.3881 2.3603 34 1 10.9753 -7.1860 1.8964 35 1 10.1393 -5.7889 1.1743 36 1 9.7713 -4.8260 3.4141 37 1 11.5059 -5.1351 3.1599 38 1 8.5269 -6.3309 4.8596 39 1 9.3926 -7.6909 5.6147 40 1 7.9477 -8.4393 3.7199 41 1 9.6709 -8.7632 3.4102 42 1 3.2646 -5.6664 -0.6320 43 1 2.1481 -3.4839 -0.4292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318736737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:27 Heat of formation + Delta-G solvation = -76.850381 kcal Electronic energy + Delta-G solvation = -25690.667771 eV Core-core repulsion = 21894.582474 eV Total energy + Delta-G solvation = -3796.085297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64581 -40.69870 -40.03939 -38.35371 -36.11400 -35.30109 -34.36921 -32.53077 -31.99872 -31.90744 -29.79056 -27.33915 -26.22164 -24.45614 -24.06244 -23.86506 -22.19953 -21.23732 -20.74477 -19.76842 -19.15809 -18.13388 -18.01427 -17.02391 -16.93360 -16.61008 -16.26305 -15.84937 -15.71076 -15.60727 -15.49928 -15.13091 -15.05093 -14.67184 -14.46241 -14.26159 -14.08071 -13.96562 -13.44702 -13.32969 -13.25450 -13.00972 -12.75270 -12.58244 -12.27154 -12.23186 -11.99700 -11.85579 -11.41895 -11.20339 -11.15582 -10.73830 -10.53332 -10.30031 -10.08090 -9.85232 -8.65461 -8.50194 -6.21187 0.23506 0.49109 0.68363 1.31555 1.34923 1.51979 2.21652 2.27663 2.28493 2.77201 2.95257 3.09050 3.10975 3.69126 3.88666 3.93092 3.96404 4.04566 4.11980 4.12533 4.34622 4.40837 4.46376 4.55285 4.56727 4.62651 4.71262 4.74737 4.78314 4.94763 4.97829 5.04984 5.09342 5.15023 5.17017 5.26675 5.36526 5.42018 5.49222 5.56562 5.75279 5.77935 5.91174 6.20471 6.24103 6.60490 6.84548 7.28519 7.59112 8.61297 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002641 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.294426 B =10599.390499 C =11404.685687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.397 4.397 8 H 0.085 0.915 9 O -0.245 6.245 10 C 0.112 3.888 11 C -0.178 4.178 12 C -0.075 4.075 13 C 0.073 3.927 14 N -0.649 5.649 15 C 0.530 3.470 16 O -0.553 6.553 17 C -0.222 4.222 18 C -0.038 4.038 19 C -0.110 4.110 20 C -0.127 4.127 21 C 0.058 3.942 22 O -0.401 6.401 23 C 0.054 3.946 24 C -0.140 4.140 25 C -0.087 4.087 26 C -0.215 4.215 27 H 0.285 0.715 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.424 0.576 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.152 0.848 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.506 -20.582 1.304 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.102 0.898 9 O -0.153 6.153 10 C 0.063 3.937 11 C -0.198 4.198 12 C -0.095 4.095 13 C -0.021 4.021 14 N -0.295 5.295 15 C 0.323 3.677 16 O -0.434 6.434 17 C -0.242 4.242 18 C -0.058 4.058 19 C -0.128 4.128 20 C -0.165 4.165 21 C -0.018 4.018 22 O -0.320 6.320 23 C -0.022 4.022 24 C -0.178 4.178 25 C -0.107 4.107 26 C -0.234 4.234 27 H 0.094 0.906 28 H 0.144 0.856 29 H 0.159 0.841 30 H 0.263 0.737 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.170 0.830 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.903 -19.717 1.933 28.083 hybrid contribution -0.984 0.710 -0.489 1.309 sum 18.919 -19.007 1.444 26.856 Atomic orbital electron populations 1.69729 1.06785 1.29562 1.50221 1.25231 0.95850 1.02019 0.95612 0.85263 0.78786 0.77693 0.79283 1.19033 1.19205 1.18970 1.20712 0.78024 0.96193 1.52414 0.89792 1.83538 1.21314 1.27299 1.83115 1.19617 0.92776 0.85524 0.95778 1.20337 0.90910 0.99095 1.09423 1.20932 1.00264 0.89864 0.98414 1.17434 0.90990 0.85742 1.07929 1.43180 1.29044 1.14673 1.42604 1.19474 0.79547 0.90160 0.78507 1.90645 1.62352 1.49614 1.40783 1.22667 1.00816 0.94742 1.05997 1.23924 0.92243 0.98487 0.91122 1.21160 0.99960 0.98330 0.93354 1.21915 0.96621 0.99788 0.98146 1.22625 1.02269 0.91971 0.84972 1.87874 1.34147 1.63253 1.46768 1.22699 0.85530 0.95391 0.98578 1.22174 1.02961 0.98566 0.94086 1.20828 0.92442 0.97313 1.00088 1.21145 1.00487 0.92762 1.09051 0.90580 0.85630 0.84144 0.73699 0.81573 0.82423 0.88192 0.90323 0.91608 0.94509 0.87828 0.94360 0.87229 0.90241 0.89866 0.83041 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.95 13.96 21.61 0.30 -54.65 16 2 C 0.01 0.66 5.49 84.82 0.47 1.12 16 3 Si 0.97 45.83 28.62 68.60 1.96 47.79 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.40 -23.34 9.90 67.91 0.67 -22.67 16 8 H 0.08 5.10 5.52 -2.91 -0.02 5.09 16 9 O -0.25 -13.45 8.58 -22.87 -0.20 -13.65 16 10 C 0.11 5.33 6.65 22.59 0.15 5.48 16 11 C -0.18 -7.30 9.98 22.37 0.22 -7.08 16 12 C -0.07 -2.65 8.69 22.38 0.19 -2.45 16 13 C 0.07 2.27 6.30 38.19 0.24 2.51 16 14 N -0.65 -14.12 5.33 -306.65 -1.63 -15.75 16 15 C 0.53 11.88 7.43 86.56 0.64 12.52 16 16 O -0.55 -16.34 10.58 -4.11 -0.04 -16.38 16 17 C -0.22 -2.96 10.01 23.42 0.23 -2.73 16 18 C -0.04 -0.48 8.84 24.52 0.22 -0.26 16 19 C -0.11 -1.97 1.79 -11.42 -0.02 -1.99 16 20 C -0.13 -2.28 5.33 30.68 0.16 -2.11 16 21 C 0.06 1.17 6.84 72.01 0.49 1.67 16 22 O -0.40 -8.74 10.77 -148.98 -1.60 -10.35 16 23 C 0.05 0.97 6.84 72.01 0.49 1.47 16 24 C -0.14 -2.08 5.41 30.68 0.17 -1.91 16 25 C -0.09 -2.85 9.96 22.38 0.22 -2.63 16 26 C -0.21 -9.20 9.13 22.37 0.20 -8.99 16 27 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.14 4.77 6.23 -2.91 -0.02 4.75 16 30 H 0.42 5.80 8.80 -92.71 -0.82 4.98 16 31 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.10 2.53 4.76 -21.11 -0.10 2.43 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.12 5.52 5.70 -2.91 -0.02 5.50 16 Total: -1.00 -71.86 354.45 3.68 -68.18 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.13 Total: 22.89 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.76 Total: -28.08 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -1.33 Total: -70.41 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.84 Total: -40.37 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.96 Total: 47.79 kcal Total: -71.86 3.68 -68.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318736737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.670 kcal (2) G-P(sol) polarization free energy of solvation -71.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds