Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35965 * 117.00435 * 2 1 4 4 C 1.39183 * 119.90932 * 359.97438 * 3 2 1 5 5 C 1.37727 * 120.57973 * 179.70202 * 4 3 2 6 6 C 1.39117 * 120.00514 * 0.28140 * 5 4 3 7 7 N 1.38140 * 133.10794 * 179.97438 * 6 5 4 8 8 H 0.97004 * 124.78613 * 0.02709 * 7 6 5 9 9 C 1.35361 * 110.43213 * 180.02562 * 7 6 5 10 10 C 1.50701 * 125.11357 * 180.02562 * 9 7 6 11 11 C 1.36494 * 109.77524 * 359.97438 * 9 7 6 12 12 C 1.46718 * 126.77319 * 180.02562 * 11 9 7 13 13 O 1.21594 * 119.99675 * 89.97685 * 12 11 9 14 14 O 1.34842 * 119.99714 * 269.97623 * 12 11 9 15 15 C 1.45201 * 116.99942 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47486 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.47132 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47041 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00210 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00236 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99994 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00193 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47316 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47276 * 120.00125 * 22 20 18 25 25 H 1.48500 * 109.47102 * 239.99723 * 22 20 18 26 26 C 1.40360 * 119.45354 * 359.97438 * 6 5 4 27 27 C 1.38219 * 119.91305 * 180.23859 * 3 2 1 28 28 H 1.09001 * 109.47229 * 59.99967 * 1 2 3 29 29 H 1.08999 * 109.47525 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47052 * 300.00561 * 1 2 3 31 31 H 1.08002 * 119.71256 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.99826 * 180.30219 * 5 4 3 33 33 H 1.08998 * 109.47605 * 89.97932 * 10 9 7 34 34 H 1.09006 * 109.47373 * 209.98060 * 10 9 7 35 35 H 1.09005 * 109.47408 * 329.97677 * 10 9 7 36 36 H 1.08997 * 109.47227 * 300.00470 * 15 14 12 37 37 H 1.09000 * 109.46762 * 60.00150 * 15 14 12 38 38 H 1.08997 * 109.47349 * 300.00490 * 16 15 14 39 39 H 1.09008 * 109.46635 * 60.00265 * 16 15 14 40 40 H 1.09000 * 109.47805 * 299.99810 * 17 16 15 41 41 H 1.08997 * 109.47366 * 60.00221 * 17 16 15 42 42 H 0.96998 * 120.00116 * 179.97438 * 21 20 18 43 43 H 1.07990 * 120.18586 * 0.05734 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2865 2.3776 -0.0005 5 6 1.8975 3.6119 0.0056 6 6 3.2858 3.7010 0.0065 7 7 4.1633 4.7679 0.0115 8 1 3.8995 5.7014 0.0159 9 6 5.4431 4.3271 0.0095 10 6 6.6641 5.2104 0.0142 11 6 5.4615 2.9623 0.0038 12 6 6.6484 2.0999 0.0005 13 8 7.1401 1.7384 1.0522 14 8 7.1939 1.7082 -1.1688 15 6 8.3673 0.8560 -1.0961 16 6 8.8402 0.5172 -2.5111 17 6 10.0769 -0.3802 -2.4344 18 6 10.5430 -0.7134 -3.8283 19 1 10.0106 -0.3238 -4.6834 20 6 11.6491 -1.5158 -4.0120 21 7 12.2978 -1.9900 -2.9708 22 14 12.2272 -1.9283 -5.7397 23 1 11.3333 -1.2758 -6.7298 24 1 13.6162 -1.4376 -5.9273 25 1 12.1915 -3.3999 -5.9355 26 6 4.0528 2.5255 0.0017 27 6 3.4267 1.2816 -0.0050 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2084 2.3140 -0.0014 32 1 1.2987 4.5107 0.0101 33 1 6.9582 5.4185 1.0430 34 1 7.4804 4.7047 -0.5017 35 1 6.4371 6.1469 -0.4953 36 1 9.1621 1.3768 -0.5620 37 1 8.1163 -0.0635 -0.5673 38 1 8.0453 -0.0038 -3.0449 39 1 9.0911 1.4366 -3.0402 40 1 10.8717 0.1411 -1.9009 41 1 9.8265 -1.2996 -1.9052 42 1 13.0757 -2.5548 -3.1000 43 1 4.0164 0.3769 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319354461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -81.767162 kcal Electronic energy + Delta-G solvation = -25238.303876 eV Core-core repulsion = 21442.005371 eV Total energy + Delta-G solvation = -3796.298505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78988 -39.82880 -39.42684 -36.30195 -36.13282 -33.90866 -32.58638 -31.59497 -31.26813 -29.84399 -27.51805 -27.18550 -26.80279 -24.10713 -22.77333 -22.30847 -21.53032 -20.31653 -19.60057 -18.32834 -17.90667 -17.07484 -16.45605 -16.21682 -16.10708 -15.94062 -15.55382 -15.42437 -15.04271 -14.43041 -14.12517 -13.89106 -13.60582 -13.31856 -13.25787 -13.07149 -12.93690 -12.55428 -12.22854 -12.17889 -12.12534 -11.84361 -11.81707 -11.06501 -10.94337 -10.80345 -10.63673 -10.57536 -10.34586 -10.28630 -9.92015 -9.64421 -9.46016 -9.10114 -8.34976 -8.22922 -7.81547 -5.99626 -4.02224 0.72528 1.32682 2.06085 2.32178 2.61774 3.06441 3.24717 3.32911 3.40285 3.45027 3.58723 4.29381 4.38068 4.47124 4.62135 4.75257 4.83457 4.88435 4.93355 5.08344 5.12671 5.18650 5.19923 5.26370 5.36405 5.44464 5.60550 5.66256 5.72249 5.75328 5.85803 6.07617 6.10165 6.23065 6.32181 6.58998 6.61726 6.63642 6.91987 7.05758 7.11218 7.22314 7.65919 7.77274 7.99280 8.06803 8.41005 9.04409 9.61847 11.11923 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.002563 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.861629 B =10922.165026 C =12154.754452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.111 3.889 4 C -0.181 4.181 5 C -0.083 4.083 6 C 0.061 3.939 7 N -0.577 5.577 8 H 0.419 0.581 9 C 0.152 3.848 10 C -0.105 4.105 11 C -0.209 4.209 12 C 0.542 3.458 13 O -0.502 6.502 14 O -0.350 6.350 15 C 0.066 3.934 16 C -0.108 4.108 17 C 0.023 3.977 18 C -0.519 4.519 19 H 0.058 0.942 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.026 4.026 27 C -0.112 4.112 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.863 15.760 7.883 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.065 3.935 4 C -0.201 4.201 5 C -0.103 4.103 6 C -0.043 4.043 7 N -0.180 5.180 8 H 0.257 0.743 9 C 0.039 3.961 10 C -0.163 4.163 11 C -0.218 4.218 12 C 0.384 3.616 13 O -0.390 6.390 14 O -0.266 6.266 15 C -0.007 4.007 16 C -0.146 4.146 17 C -0.014 4.014 18 C -0.557 4.557 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.031 4.031 27 C -0.131 4.131 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.488 15.431 8.222 30.089 hybrid contribution 0.069 0.162 -0.786 0.806 sum -24.419 15.593 7.435 29.912 Atomic orbital electron populations 1.23037 0.78596 1.03942 1.01101 1.86113 1.21107 1.26533 1.89162 1.18577 0.91602 0.84210 0.99100 1.20900 0.99843 0.91298 1.08014 1.19762 0.89991 0.97817 1.02741 1.18010 0.91413 0.86454 1.08432 1.41289 1.03918 1.08178 1.64625 0.74278 1.20229 0.85763 0.92401 0.97686 1.20689 0.92955 0.98421 1.04197 1.18719 0.90349 0.91443 1.21314 1.20016 0.81801 0.77573 0.82207 1.90862 1.61499 1.53491 1.33180 1.86700 1.44191 1.62513 1.33192 1.23524 0.83471 0.92440 1.01301 1.21755 1.00116 1.00987 0.91741 1.19059 0.90606 0.94015 0.97693 1.21223 1.11916 1.30284 0.92327 0.92388 1.25033 0.96585 0.95950 0.96956 1.69979 1.19781 1.34361 1.29292 0.86499 0.78546 0.78113 0.84640 1.19673 1.21012 1.20993 1.18287 0.90419 0.92013 1.02338 1.19596 0.91348 0.96923 1.05254 0.92736 0.88282 0.92803 0.84856 0.85512 0.89305 0.88914 0.90193 0.91490 0.91470 0.92118 0.92197 0.96230 0.96186 0.92982 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.57 10.49 -19.63 -0.21 -3.78 16 3 C 0.11 1.31 6.68 -39.24 -0.26 1.05 16 4 C -0.18 -1.65 9.01 -39.42 -0.36 -2.00 16 5 C -0.08 -0.71 10.06 -39.44 -0.40 -1.11 16 6 C 0.06 0.66 7.26 -83.90 -0.61 0.05 16 7 N -0.58 -4.96 5.99 -6.75 -0.04 -5.00 16 8 H 0.42 1.93 8.96 -40.82 -0.37 1.56 16 9 C 0.15 1.66 7.12 -81.66 -0.58 1.08 16 10 C -0.11 -0.83 10.20 36.01 0.37 -0.47 16 11 C -0.21 -3.09 6.15 -103.34 -0.64 -3.72 16 12 C 0.54 9.52 7.30 34.16 0.25 9.77 16 13 O -0.50 -10.01 16.90 -19.34 -0.33 -10.33 16 14 O -0.35 -6.45 10.23 -40.88 -0.42 -6.87 16 15 C 0.07 1.28 5.48 37.16 0.20 1.48 16 16 C -0.11 -2.33 5.53 -26.74 -0.15 -2.48 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 22 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 C -0.03 -0.37 6.36 -104.95 -0.67 -1.03 16 27 C -0.11 -1.57 10.03 -39.21 -0.39 -1.96 16 28 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.13 0.82 6.26 -52.49 -0.33 0.49 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -35.49 372.10 -8.54 -44.03 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.09 Total: -2.70 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.79 Total: -11.34 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.70 Total: -31.42 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.95 Total: -20.98 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.49 -8.54 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319354461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.738 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds