Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35965 * 117.00435 * 2 1 4 4 C 1.39183 * 119.90932 * 359.97438 * 3 2 1 5 5 C 1.37727 * 120.57973 * 179.70202 * 4 3 2 6 6 C 1.39117 * 120.00514 * 0.28140 * 5 4 3 7 7 N 1.38140 * 133.10794 * 179.97438 * 6 5 4 8 8 H 0.97004 * 124.78613 * 0.02709 * 7 6 5 9 9 C 1.35361 * 110.43213 * 180.02562 * 7 6 5 10 10 C 1.50701 * 125.11357 * 180.02562 * 9 7 6 11 11 C 1.36494 * 109.77524 * 359.97438 * 9 7 6 12 12 C 1.46718 * 126.77319 * 180.02562 * 11 9 7 13 13 O 1.21594 * 119.99675 * 89.97685 * 12 11 9 14 14 O 1.34842 * 119.99714 * 269.97623 * 12 11 9 15 15 C 1.45201 * 116.99942 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47486 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.47132 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47041 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00210 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00236 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99994 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00193 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47316 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47276 * 120.00125 * 22 20 18 25 25 H 1.48500 * 109.47102 * 239.99723 * 22 20 18 26 26 C 1.40360 * 119.45354 * 359.97438 * 6 5 4 27 27 C 1.38219 * 119.91305 * 180.23859 * 3 2 1 28 28 H 1.09001 * 109.47229 * 59.99967 * 1 2 3 29 29 H 1.08999 * 109.47525 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47052 * 300.00561 * 1 2 3 31 31 H 1.08002 * 119.71256 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.99826 * 180.30219 * 5 4 3 33 33 H 1.08998 * 109.47605 * 89.97932 * 10 9 7 34 34 H 1.09006 * 109.47373 * 209.98060 * 10 9 7 35 35 H 1.09005 * 109.47408 * 329.97677 * 10 9 7 36 36 H 1.08997 * 109.47227 * 300.00470 * 15 14 12 37 37 H 1.09000 * 109.46762 * 60.00150 * 15 14 12 38 38 H 1.08997 * 109.47349 * 300.00490 * 16 15 14 39 39 H 1.09008 * 109.46635 * 60.00265 * 16 15 14 40 40 H 1.09000 * 109.47805 * 299.99810 * 17 16 15 41 41 H 1.08997 * 109.47366 * 60.00221 * 17 16 15 42 42 H 0.96998 * 120.00116 * 179.97438 * 21 20 18 43 43 H 1.07990 * 120.18586 * 0.05734 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2865 2.3776 -0.0005 5 6 1.8975 3.6119 0.0056 6 6 3.2858 3.7010 0.0065 7 7 4.1633 4.7679 0.0115 8 1 3.8995 5.7014 0.0159 9 6 5.4431 4.3271 0.0095 10 6 6.6641 5.2104 0.0142 11 6 5.4615 2.9623 0.0038 12 6 6.6484 2.0999 0.0005 13 8 7.1401 1.7384 1.0522 14 8 7.1939 1.7082 -1.1688 15 6 8.3673 0.8560 -1.0961 16 6 8.8402 0.5172 -2.5111 17 6 10.0769 -0.3802 -2.4344 18 6 10.5430 -0.7134 -3.8283 19 1 10.0106 -0.3238 -4.6834 20 6 11.6491 -1.5158 -4.0120 21 7 12.2978 -1.9900 -2.9708 22 14 12.2272 -1.9283 -5.7397 23 1 11.3333 -1.2758 -6.7298 24 1 13.6162 -1.4376 -5.9273 25 1 12.1915 -3.3999 -5.9355 26 6 4.0528 2.5255 0.0017 27 6 3.4267 1.2816 -0.0050 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2084 2.3140 -0.0014 32 1 1.2987 4.5107 0.0101 33 1 6.9582 5.4185 1.0430 34 1 7.4804 4.7047 -0.5017 35 1 6.4371 6.1469 -0.4953 36 1 9.1621 1.3768 -0.5620 37 1 8.1163 -0.0635 -0.5673 38 1 8.0453 -0.0038 -3.0449 39 1 9.0911 1.4366 -3.0402 40 1 10.8717 0.1411 -1.9009 41 1 9.8265 -1.2996 -1.9052 42 1 13.0757 -2.5548 -3.1000 43 1 4.0164 0.3769 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319354461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -103.561339 kcal Electronic energy + Delta-G solvation = -25239.248942 eV Core-core repulsion = 21442.005371 eV Total energy + Delta-G solvation = -3797.243571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.65551 -41.16142 -40.30225 -37.75920 -37.00591 -35.92831 -33.79310 -33.31334 -31.99294 -30.69327 -29.10430 -27.94884 -27.81335 -25.69404 -24.22714 -23.25960 -22.33131 -22.18042 -20.83688 -19.21744 -18.72305 -18.69930 -18.18827 -17.62457 -17.07846 -16.79226 -16.64180 -16.49177 -16.34792 -15.81882 -15.51529 -14.88181 -14.68705 -14.42858 -14.11144 -14.07246 -13.89963 -13.80227 -13.78414 -13.60591 -13.21955 -12.85743 -12.84782 -12.69697 -12.51140 -12.42547 -12.09466 -12.00701 -11.74041 -11.48112 -11.46135 -11.43335 -11.22897 -10.82982 -10.58145 -9.05166 -8.68528 -8.21858 -6.33521 -0.09521 0.48499 0.96169 1.11227 1.41230 1.41906 1.55651 1.70929 2.07019 2.38956 2.41967 2.73111 3.11826 3.52437 3.66707 3.73501 3.96636 3.97527 4.04347 4.11087 4.24204 4.31369 4.36592 4.43421 4.46081 4.47694 4.57109 4.60692 4.76150 4.77624 4.85945 4.92806 5.01186 5.05684 5.10203 5.26877 5.33003 5.41341 5.44691 5.49846 5.62718 5.79595 5.81453 6.18834 6.47101 6.53079 6.64027 6.82194 7.35870 8.90754 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.002563 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.861629 B =10922.165026 C =12154.754452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.111 3.889 4 C -0.180 4.180 5 C -0.061 4.061 6 C 0.053 3.947 7 N -0.551 5.551 8 H 0.443 0.557 9 C 0.181 3.819 10 C -0.107 4.107 11 C -0.272 4.272 12 C 0.548 3.452 13 O -0.536 6.536 14 O -0.352 6.352 15 C 0.074 3.926 16 C -0.092 4.092 17 C 0.027 3.973 18 C -0.542 4.542 19 H 0.064 0.936 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.970 3.030 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.278 1.278 26 C -0.052 4.052 27 C -0.161 4.161 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.000 1.000 41 H -0.005 1.005 42 H 0.265 0.735 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.553 18.758 6.750 34.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.259 6.259 3 C 0.066 3.934 4 C -0.199 4.199 5 C -0.081 4.081 6 C -0.051 4.051 7 N -0.156 5.156 8 H 0.286 0.714 9 C 0.064 3.936 10 C -0.164 4.164 11 C -0.281 4.281 12 C 0.393 3.607 13 O -0.426 6.426 14 O -0.269 6.269 15 C 0.001 3.999 16 C -0.130 4.130 17 C -0.011 4.011 18 C -0.580 4.580 19 H 0.083 0.917 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.184 1.184 24 H -0.202 1.202 25 H -0.204 1.204 26 C -0.056 4.056 27 C -0.181 4.181 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.191 0.809 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.018 0.982 41 H 0.013 0.987 42 H 0.074 0.926 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -27.232 18.468 7.086 33.658 hybrid contribution 0.783 -0.759 -0.374 1.153 sum -26.449 17.709 6.712 32.530 Atomic orbital electron populations 1.23380 0.76050 1.05513 1.02715 1.86081 1.23862 1.26915 1.88998 1.18753 0.91035 0.85544 0.98098 1.21300 1.01432 0.90243 1.06957 1.20294 0.89112 0.99310 0.99358 1.18214 0.92328 0.85729 1.08836 1.41210 1.02666 1.09026 1.62659 0.71428 1.20544 0.87460 0.91285 0.94318 1.20847 0.91004 0.99191 1.05343 1.18752 0.89529 0.92959 1.26825 1.20596 0.82001 0.76963 0.81173 1.90821 1.62773 1.54954 1.34018 1.86695 1.43648 1.62264 1.34247 1.23206 0.84276 0.92545 0.99899 1.21456 0.98111 1.00394 0.93024 1.18933 0.91978 0.93603 0.96539 1.21638 1.12428 1.30661 0.93279 0.91748 1.26027 0.96631 0.95615 1.01684 1.70112 1.20361 1.35009 1.31926 0.85316 0.78247 0.77980 0.79005 1.18405 1.20171 1.20412 1.18488 0.90564 0.93267 1.03302 1.19564 0.92728 0.96281 1.09511 0.91083 0.86997 0.91012 0.81226 0.80851 0.87963 0.90641 0.86317 0.91216 0.92418 0.91987 0.91150 0.98154 0.98663 0.92640 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.90 10.49 -93.15 -0.98 -8.88 16 3 C 0.11 2.66 6.68 22.49 0.15 2.81 16 4 C -0.18 -2.76 9.01 22.38 0.20 -2.55 16 5 C -0.06 -0.81 10.06 22.36 0.22 -0.59 16 6 C 0.05 1.04 7.26 38.88 0.28 1.32 16 7 N -0.55 -7.80 5.99 -175.26 -1.05 -8.85 16 8 H 0.44 2.02 8.96 -92.71 -0.83 1.18 16 9 C 0.18 3.69 7.12 41.61 0.30 3.98 16 10 C -0.11 -1.47 10.20 71.24 0.73 -0.74 16 11 C -0.27 -8.32 6.15 -19.03 -0.12 -8.44 16 12 C 0.55 20.61 7.30 70.04 0.51 21.13 16 13 O -0.54 -22.93 16.90 19.53 0.33 -22.60 16 14 O -0.35 -13.77 10.23 -57.55 -0.59 -14.36 16 15 C 0.07 3.07 5.48 71.98 0.39 3.46 16 16 C -0.09 -4.12 5.53 30.59 0.17 -3.95 16 17 C 0.03 1.46 4.97 29.85 0.15 1.61 16 18 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 19 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 20 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 21 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 22 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 C -0.05 -1.51 6.36 -20.08 -0.13 -1.64 16 27 C -0.16 -4.92 10.03 22.51 0.23 -4.70 16 28 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 31 H 0.17 1.30 6.26 -2.91 -0.02 1.28 16 32 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.36 7.85 -2.38 -0.02 1.34 16 35 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.01 16 41 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.10 3.51 8.06 -2.92 -0.02 3.48 16 Total: -1.00 -82.29 372.10 5.12 -77.17 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.20 Total: 6.23 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.89 Total: -17.98 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -0.76 Total: -66.54 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -1.24 Total: -45.84 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -82.29 5.12 -77.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319354461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.389 kcal (2) G-P(sol) polarization free energy of solvation -82.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds