Wall clock time and date at job start Tue Mar 31 2020 11:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38121 * 120.03591 * 2 1 4 4 C 1.38275 * 120.06923 * 180.27526 * 3 2 1 5 5 C 1.38311 * 120.15355 * 359.71590 * 4 3 2 6 6 C 1.38082 * 120.07315 * 0.02562 * 5 4 3 7 7 C 1.38901 * 120.03428 * 179.71537 * 2 1 3 8 8 N 1.39748 * 120.07875 * 0.02562 * 7 2 1 9 9 C 1.38691 * 120.00093 * 147.42750 * 8 7 2 10 10 N 1.29699 * 124.94841 * 173.11628 * 9 8 7 11 11 C 1.32072 * 116.86981 * 180.17603 * 10 9 8 12 12 C 1.50700 * 122.70485 * 179.82582 * 11 10 9 13 13 N 1.46907 * 109.46957 * 274.70367 * 12 11 10 14 14 C 1.46899 * 110.99747 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.47355 * 35.00324 * 14 13 12 16 16 C 1.52999 * 109.47504 * 275.00027 * 14 13 12 17 17 C 1.50702 * 109.46708 * 155.00289 * 14 13 12 18 18 H 1.07997 * 120.00464 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99792 * 180.02562 * 17 14 13 20 20 N 1.31511 * 119.99805 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 119.99659 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47450 * 60.00480 * 21 19 17 23 23 H 1.48501 * 109.47065 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47444 * 300.00055 * 21 19 17 25 25 C 1.33354 * 114.58632 * 359.55094 * 11 10 9 26 26 S 1.70965 * 124.94688 * 352.82551 * 9 8 7 27 27 H 1.09001 * 109.47136 * 270.27795 * 1 2 3 28 28 H 1.08997 * 109.46859 * 30.28241 * 1 2 3 29 29 H 1.09004 * 109.46809 * 150.27704 * 1 2 3 30 30 H 1.07995 * 119.96488 * 359.97289 * 3 2 1 31 31 H 1.08002 * 119.92171 * 179.74673 * 4 3 2 32 32 H 1.07993 * 119.96406 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.03493 * 180.02562 * 6 5 4 34 34 H 0.96995 * 119.99496 * 327.42691 * 8 7 2 35 35 H 1.09002 * 109.47729 * 34.70523 * 12 11 10 36 36 H 1.09004 * 109.47528 * 154.70661 * 12 11 10 37 37 H 1.00901 * 110.99408 * 56.04947 * 13 12 11 38 38 H 1.08995 * 109.47550 * 180.02562 * 16 14 13 39 39 H 1.09003 * 109.47057 * 300.00479 * 16 14 13 40 40 H 1.09001 * 109.47086 * 60.00409 * 16 14 13 41 41 H 0.97005 * 119.99237 * 180.02562 * 20 19 17 42 42 H 1.08004 * 125.96009 * 180.21546 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5812 1.1965 -0.0057 5 6 4.2766 0.0010 -0.0056 6 6 3.5917 -1.1979 -0.0002 7 6 2.2023 -1.2025 0.0060 8 7 1.5059 -2.4141 0.0115 9 6 2.0382 -3.5228 -0.6297 10 7 1.5416 -4.7199 -0.5791 11 6 2.1819 -5.6605 -1.2495 12 6 1.7231 -7.0957 -1.2782 13 7 2.2571 -7.8040 -0.1071 14 6 1.8288 -9.2091 -0.1013 15 1 1.7812 -9.5787 -1.1257 16 6 0.4464 -9.3183 0.5451 17 6 2.8171 -10.0322 0.6842 18 1 3.6775 -9.5589 1.1337 19 6 2.6234 -11.3897 0.8281 20 7 1.5765 -11.9663 0.2794 21 14 3.8487 -12.4100 1.8011 22 1 3.9138 -11.9071 3.1969 23 1 3.4165 -13.8307 1.8061 24 1 5.1904 -12.3036 1.1735 25 6 3.2640 -5.2368 -1.9037 26 16 3.4405 -3.5091 -1.6076 27 1 -0.3633 0.0050 1.0277 28 1 -0.3633 0.8874 -0.5182 29 1 -0.3633 -0.8925 -0.5096 30 1 1.6585 2.1310 -0.0004 31 1 4.1193 2.1329 -0.0099 32 1 5.3565 0.0052 -0.0097 33 1 4.1354 -2.1311 0.0003 34 1 0.6504 -2.4796 0.4637 35 1 0.6338 -7.1295 -1.2576 36 1 2.0843 -7.5746 -2.1883 37 1 1.9893 -7.3411 0.7485 38 1 0.1288 -10.3610 0.5498 39 1 0.4941 -8.9488 1.5695 40 1 -0.2684 -8.7230 -0.0230 41 1 1.4401 -12.9213 0.3810 42 1 3.9183 -5.8464 -2.5092 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331776945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:45 Heat of formation + Delta-G solvation = 59.033282 kcal Electronic energy + Delta-G solvation = -22847.788848 eV Core-core repulsion = 19532.641531 eV Total energy + Delta-G solvation = -3315.147317 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24225 -40.46189 -37.83273 -36.67908 -34.52508 -33.72715 -31.97361 -30.44164 -29.48192 -27.71549 -27.29148 -26.55410 -25.05364 -22.81406 -22.64090 -22.15895 -20.82388 -19.33472 -18.30994 -18.03719 -17.62569 -16.85086 -16.65125 -16.51072 -15.99894 -15.72515 -15.21136 -15.10853 -14.79390 -14.68575 -14.52863 -14.08342 -13.98414 -13.61816 -13.27867 -13.25532 -13.14724 -12.89368 -12.80404 -12.50836 -12.40127 -12.29218 -12.17656 -12.13662 -11.81510 -11.72906 -11.08056 -10.72921 -10.48580 -10.27545 -9.85464 -9.66732 -9.03057 -8.52232 -8.09514 -6.20953 -0.24332 0.10480 0.33961 0.53959 0.82980 1.43413 1.45487 1.53254 1.77339 1.86947 2.44897 2.79871 3.18390 3.47523 3.84329 3.84736 3.90073 4.17810 4.20348 4.37598 4.41572 4.48871 4.57987 4.61361 4.71968 4.72883 4.76436 4.83236 4.89090 4.97195 5.06775 5.08800 5.24067 5.31089 5.36855 5.45903 5.61004 5.66986 5.68631 5.78605 6.06230 6.20757 6.24376 6.59561 6.70677 6.89342 6.91929 7.48351 8.95946 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024945 B = 0.002469 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.198532 B =11339.377114 C =11631.949101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.137 4.137 5 C -0.091 4.091 6 C -0.182 4.182 7 C 0.142 3.858 8 N -0.627 5.627 9 C 0.278 3.722 10 N -0.556 5.556 11 C 0.097 3.903 12 C 0.137 3.863 13 N -0.677 5.677 14 C 0.217 3.783 15 H 0.009 0.991 16 C -0.155 4.155 17 C -0.516 4.516 18 H 0.053 0.947 19 C 0.009 3.991 20 N -0.922 5.922 21 Si 0.963 3.037 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.289 4.289 26 S 0.175 5.825 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.422 0.578 35 H 0.028 0.972 36 H 0.084 0.916 37 H 0.328 0.672 38 H 0.065 0.935 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 30.204 -3.048 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.156 4.156 5 C -0.109 4.109 6 C -0.204 4.204 7 C 0.046 3.954 8 N -0.259 5.259 9 C -0.092 4.092 10 N -0.281 5.281 11 C -0.033 4.033 12 C 0.005 3.995 13 N -0.306 5.306 14 C 0.109 3.891 15 H 0.027 0.973 16 C -0.215 4.215 17 C -0.555 4.555 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.788 3.212 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.430 4.430 26 S 0.425 5.575 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.141 0.859 34 H 0.262 0.738 35 H 0.046 0.954 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.877 30.556 -3.429 30.882 hybrid contribution -1.321 -2.098 0.945 2.653 sum 1.556 28.457 -2.485 28.608 Atomic orbital electron populations 1.20784 0.89729 1.03569 1.03171 1.19902 0.97206 0.91247 1.04119 1.21266 0.94609 0.97271 0.97727 1.21505 0.94363 0.98886 1.00817 1.21245 1.01180 0.91125 0.97358 1.21209 0.92546 1.00138 1.06546 1.17804 0.91437 0.84129 1.01991 1.41236 1.24003 1.04614 1.56035 1.23653 0.97379 0.90051 0.98072 1.66101 1.35672 0.98776 1.27558 1.19677 0.93119 0.94932 0.95600 1.20368 0.96475 0.86841 0.95797 1.60786 1.62847 1.03138 1.03846 1.18972 0.91277 0.83921 0.94977 0.97276 1.22240 0.98906 1.02143 0.98210 1.21377 1.08603 0.92754 1.32747 0.92863 1.25726 0.97404 0.98867 0.96920 1.70002 1.29166 1.11077 1.45939 0.85545 0.79248 0.77311 0.79086 1.19852 1.20808 1.19756 1.26914 1.04756 0.99075 1.12277 1.83718 1.24586 1.05020 1.44187 0.90161 0.89292 0.92547 0.82896 0.82998 0.83501 0.85933 0.73775 0.95370 0.89759 0.85565 0.91574 0.95358 0.95884 0.92907 0.79517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.46 71.24 0.67 -0.68 16 2 C -0.12 -1.85 5.90 -19.73 -0.12 -1.96 16 3 C -0.09 -1.03 9.70 22.25 0.22 -0.82 16 4 C -0.14 -1.49 10.04 22.30 0.22 -1.27 16 5 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16 6 C -0.18 -3.46 8.20 22.40 0.18 -3.28 16 7 C 0.14 2.82 6.27 38.21 0.24 3.06 16 8 N -0.63 -14.47 4.95 -190.71 -0.94 -15.42 16 9 C 0.28 7.93 7.96 179.29 1.43 9.35 16 10 N -0.56 -19.22 10.59 -189.80 -2.01 -21.23 16 11 C 0.10 3.42 6.25 41.42 0.26 3.68 16 12 C 0.14 5.44 5.92 85.56 0.51 5.94 16 13 N -0.68 -31.11 6.22 -499.44 -3.11 -34.22 16 14 C 0.22 11.48 2.57 44.17 0.11 11.59 16 15 H 0.01 0.53 7.80 -2.39 -0.02 0.52 16 16 C -0.16 -7.92 8.94 71.98 0.64 -7.28 16 17 C -0.52 -29.65 8.84 25.60 0.23 -29.43 16 18 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 19 C 0.01 0.51 5.30 84.66 0.45 0.96 16 20 N -0.92 -54.09 11.32 21.45 0.24 -53.85 16 21 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 25 C -0.29 -8.69 11.09 66.71 0.74 -7.95 16 26 S 0.18 4.29 19.14 -56.49 -1.08 3.21 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.06 0.78 7.13 -2.38 -0.02 0.76 16 30 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.12 2.56 5.53 -11.22 -0.06 2.50 16 34 H 0.42 8.91 7.87 -92.71 -0.73 8.18 16 35 H 0.03 1.15 7.44 -2.39 -0.02 1.13 16 36 H 0.08 3.23 8.01 -2.38 -0.02 3.21 16 37 H 0.33 15.13 8.46 -89.69 -0.76 14.37 16 38 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 39 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 40 H 0.02 1.05 7.45 -2.39 -0.02 1.03 16 41 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 42 H 0.19 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -66.74 358.04 0.65 -66.09 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.48 Total: 27.59 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 6.01 Total: -19.11 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -5.82 Total: -124.71 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.08 Total: 3.21 kcal Total: -66.74 0.65 -66.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331776945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.121 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds