Wall clock time and date at job start Tue Mar 31 2020 12:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37844 * 125.89473 * 2 1 4 4 C 1.47114 * 127.02618 * 0.02660 * 3 2 1 5 5 O 1.21546 * 119.99943 * 0.31090 * 4 3 2 6 6 O 1.34786 * 119.99939 * 180.30687 * 4 3 2 7 7 C 1.45195 * 116.99720 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47418 * 30.00012 * 7 6 4 9 9 C 1.50697 * 109.47043 * 150.00315 * 7 6 4 10 10 H 1.08001 * 120.00106 * 359.97438 * 9 7 6 11 11 C 1.37872 * 120.00418 * 180.02562 * 9 7 6 12 12 N 1.31518 * 119.99728 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 120.00458 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46915 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47156 * 119.99844 * 13 11 9 16 16 H 1.48503 * 109.46917 * 240.00060 * 13 11 9 17 17 C 1.50707 * 109.47202 * 269.99695 * 7 6 4 18 18 C 1.34510 * 125.78575 * 145.00035 * 17 7 6 19 19 C 1.41386 * 106.83881 * 180.02562 * 18 17 7 20 20 C 1.34508 * 106.84253 * 0.02562 * 19 18 17 21 21 O 1.34295 * 125.78845 * 324.69943 * 17 7 6 22 22 C 1.46744 * 105.94868 * 180.26462 * 3 2 1 23 23 C 1.34428 * 106.37330 * 359.74781 * 22 3 2 24 24 N 1.34622 * 125.89757 * 179.82579 * 2 1 3 25 25 C 1.46500 * 124.80870 * 359.97438 * 24 2 1 26 26 C 1.52997 * 109.47473 * 119.72115 * 25 24 2 27 27 C 1.52999 * 109.46944 * 239.72460 * 25 24 2 28 28 H 1.09000 * 109.47101 * 270.17473 * 1 2 3 29 29 H 1.09002 * 109.46805 * 30.17130 * 1 2 3 30 30 H 1.08999 * 109.47179 * 150.17293 * 1 2 3 31 31 H 0.96999 * 120.00120 * 180.02562 * 12 11 9 32 32 H 1.07999 * 126.58496 * 0.04006 * 18 17 7 33 33 H 1.08006 * 126.57937 * 179.97438 * 19 18 17 34 34 H 1.07997 * 125.79356 * 180.02562 * 20 19 18 35 35 H 1.08001 * 126.80936 * 179.74588 * 22 3 2 36 36 H 1.08005 * 125.45505 * 179.97438 * 23 22 3 37 37 H 1.09002 * 109.47129 * 359.71858 * 25 24 2 38 38 H 1.09002 * 109.47153 * 59.99757 * 26 25 24 39 39 H 1.09001 * 109.46832 * 299.99948 * 26 25 24 40 40 H 1.09004 * 109.47261 * 179.97438 * 26 25 24 41 41 H 1.09000 * 109.47486 * 59.99569 * 27 25 24 42 42 H 1.09001 * 109.47362 * 180.02562 * 27 25 24 43 43 H 1.09002 * 109.46716 * 299.99651 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8832 2.5229 0.0005 5 8 0.6985 2.7947 0.0068 6 8 2.8011 3.5099 -0.0058 7 6 2.3025 4.8736 -0.0042 8 1 1.3449 4.9099 0.5151 9 6 3.2899 5.7686 0.6995 10 1 4.2007 5.3539 1.1053 11 6 3.0299 7.1167 0.8261 12 7 1.9205 7.6216 0.3323 13 14 4.2535 8.2259 1.6990 14 1 5.4117 7.4190 2.1602 15 1 4.7239 9.2778 0.7623 16 1 3.5971 8.8626 2.8691 17 6 2.1218 5.3441 -1.4245 18 6 1.1521 6.1665 -1.8634 19 6 1.3597 6.3407 -3.2510 20 6 2.4435 5.6140 -3.5772 21 8 2.9050 5.0178 -2.4656 22 6 3.6947 0.6161 -0.0065 23 6 3.6109 -0.7256 -0.0042 24 7 2.2964 -1.0905 0.0033 25 6 1.8124 -2.4732 0.0081 26 6 2.3183 -3.1951 -1.2424 27 6 2.3307 -3.1907 1.2560 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8885 -0.5165 30 1 -0.3633 -0.8915 -0.5111 31 1 1.7378 8.5701 0.4210 32 1 0.3659 6.6090 -1.2697 33 1 0.7622 6.9415 -3.9208 34 1 2.8734 5.5291 -4.5643 35 1 4.5979 1.2082 -0.0121 36 1 4.4499 -1.4057 -0.0080 37 1 0.7224 -2.4766 0.0135 38 1 3.4083 -3.1917 -1.2479 39 1 1.9490 -2.6839 -2.1315 40 1 1.9585 -4.2240 -1.2386 41 1 1.9703 -2.6765 2.1469 42 1 1.9710 -4.2197 1.2594 43 1 3.4207 -3.1874 1.2506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:23 Heat of formation + Delta-G solvation = -26.967324 kcal Electronic energy + Delta-G solvation = -26630.994154 eV Core-core repulsion = 22837.071949 eV Total energy + Delta-G solvation = -3793.922206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33806 -41.20787 -38.89504 -35.64706 -35.18594 -33.17432 -31.57706 -31.51287 -30.09969 -29.28167 -27.69032 -26.70519 -26.17456 -23.61558 -22.48281 -21.93537 -20.47569 -19.74600 -19.00830 -18.43433 -17.23953 -16.78196 -16.37238 -15.93107 -15.32492 -15.24563 -14.77248 -14.58654 -14.46408 -14.34294 -13.57293 -13.35635 -13.23278 -12.79954 -12.76803 -12.69740 -12.45332 -12.31838 -12.27147 -11.86272 -11.67639 -11.54933 -11.46097 -11.38114 -11.35028 -11.10291 -11.01961 -10.87687 -10.26738 -9.90212 -9.48861 -9.25938 -8.73303 -8.54405 -8.44398 -7.96361 -7.13419 -6.11766 -4.29922 1.93614 2.63684 2.72835 3.00451 3.26430 3.32767 3.38133 3.86022 3.96108 4.10412 4.25097 4.31743 4.42300 4.55411 4.62618 4.76990 5.03495 5.10985 5.15705 5.23912 5.30048 5.30679 5.39208 5.62160 5.67650 5.74846 5.78622 5.85623 5.95327 6.14297 6.17592 6.20734 6.38061 6.56215 6.88671 6.97206 7.11571 7.22708 7.31310 7.35886 7.36518 7.56303 7.80391 7.84233 8.00609 8.50592 8.70187 8.99706 9.36851 10.85606 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.003600 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.271970 B = 7776.872906 C = 8503.367854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.102 3.898 3 C -0.212 4.212 4 C 0.531 3.469 5 O -0.530 6.530 6 O -0.342 6.342 7 C 0.298 3.702 8 H 0.078 0.922 9 C -0.525 4.525 10 H 0.078 0.922 11 C 0.068 3.932 12 N -0.869 5.869 13 Si 0.913 3.087 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.025 3.975 18 C -0.177 4.177 19 C -0.219 4.219 20 C -0.092 4.092 21 O -0.177 6.177 22 C -0.138 4.138 23 C -0.030 4.030 24 N -0.435 5.435 25 C 0.121 3.879 26 C -0.163 4.163 27 C -0.162 4.162 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.183 0.817 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 -19.697 -2.201 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.014 4.014 3 C -0.221 4.221 4 C 0.378 3.622 5 O -0.422 6.422 6 O -0.258 6.258 7 C 0.245 3.755 8 H 0.095 0.905 9 C -0.563 4.563 10 H 0.096 0.904 11 C -0.137 4.137 12 N -0.504 5.504 13 Si 0.739 3.261 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.206 1.206 17 C -0.026 4.026 18 C -0.197 4.197 19 C -0.239 4.239 20 C -0.159 4.159 21 O -0.074 6.074 22 C -0.161 4.161 23 C -0.155 4.155 24 N -0.113 5.113 25 C 0.019 3.981 26 C -0.221 4.221 27 C -0.220 4.220 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.199 0.801 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.696 -19.923 -2.189 20.055 hybrid contribution 0.491 1.162 0.105 1.266 sum -0.205 -18.761 -2.084 18.878 Atomic orbital electron populations 1.20569 0.87204 1.03935 1.03362 1.20490 0.93486 0.85037 1.02393 1.19622 0.93586 0.89490 1.19358 1.20086 0.84070 0.85803 0.72270 1.90730 1.18409 1.84872 1.48197 1.86616 1.39154 1.17606 1.82438 1.19140 0.98413 0.73252 0.84721 0.90488 1.20957 1.06741 0.92135 1.36436 0.90408 1.24938 0.96022 0.97599 0.95165 1.70048 1.23806 1.13744 1.42784 0.86198 0.80813 0.80031 0.79029 1.19294 1.20750 1.20623 1.23615 0.89685 1.00543 0.88743 1.21272 1.02685 1.02886 0.92819 1.21701 1.00556 1.04821 0.96811 1.23573 0.99284 1.02571 0.90497 1.83999 1.48632 1.58765 1.15987 1.22134 0.96341 0.92930 1.04732 1.21476 0.85416 0.95945 1.12642 1.43723 1.05930 1.05221 1.56446 1.21484 1.00429 0.79343 0.96871 1.22174 1.02458 1.00552 0.96866 1.22162 1.02383 1.00556 0.96860 0.90477 0.87969 0.92128 0.92332 0.83715 0.85282 0.80057 0.83111 0.82046 0.88194 0.91558 0.91632 0.90743 0.91602 0.90748 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.35 36.01 0.34 -0.89 16 2 C 0.10 1.56 6.93 -81.51 -0.56 1.00 16 3 C -0.21 -4.02 6.33 -103.01 -0.65 -4.67 16 4 C 0.53 12.36 7.92 34.33 0.27 12.64 16 5 O -0.53 -13.03 14.14 -19.30 -0.27 -13.31 16 6 O -0.34 -8.80 9.74 -43.49 -0.42 -9.22 16 7 C 0.30 8.29 2.42 -29.03 -0.07 8.22 16 8 H 0.08 2.28 7.16 -51.93 -0.37 1.90 16 9 C -0.53 -15.02 8.89 -34.44 -0.31 -15.32 16 10 H 0.08 2.20 7.81 -52.49 -0.41 1.79 16 11 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 12 N -0.87 -24.51 10.48 55.43 0.58 -23.93 16 13 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 C 0.03 0.68 5.67 -35.62 -0.20 0.48 16 18 C -0.18 -4.60 9.04 -39.70 -0.36 -4.96 16 19 C -0.22 -4.91 10.91 -39.70 -0.43 -5.34 16 20 C -0.09 -1.99 12.09 29.41 0.36 -1.63 16 21 O -0.18 -4.58 10.64 2.18 0.02 -4.55 16 22 C -0.14 -2.22 11.00 -37.49 -0.41 -2.64 16 23 C -0.03 -0.37 10.14 -16.86 -0.17 -0.54 16 24 N -0.44 -5.24 2.56 -105.19 -0.27 -5.51 16 25 C 0.12 0.96 3.44 -67.93 -0.23 0.72 16 26 C -0.16 -1.06 9.22 37.16 0.34 -0.72 16 27 C -0.16 -1.05 9.22 37.16 0.34 -0.70 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.60 6.53 -51.93 -0.34 1.26 16 30 H 0.06 0.59 6.97 -51.93 -0.36 0.23 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.15 3.85 7.49 -52.49 -0.39 3.46 16 33 H 0.13 2.45 8.06 -52.48 -0.42 2.02 16 34 H 0.18 3.01 8.06 -52.49 -0.42 2.58 16 35 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16 37 H 0.10 0.71 6.48 -51.93 -0.34 0.37 16 38 H 0.07 0.43 7.88 -51.93 -0.41 0.02 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.42 7.88 -51.93 -0.41 0.02 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -33.61 365.74 -7.69 -41.30 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.97 Total: 5.90 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.85 Total: -12.57 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.31 Total: -29.44 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.67 Total: -27.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.61 -7.69 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.332 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds