Wall clock time and date at job start Tue Mar 31 2020 12:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37844 * 125.89473 * 2 1 4 4 C 1.47114 * 127.02618 * 0.02660 * 3 2 1 5 5 O 1.21546 * 119.99943 * 0.31090 * 4 3 2 6 6 O 1.34786 * 119.99939 * 180.30687 * 4 3 2 7 7 C 1.45195 * 116.99720 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47418 * 30.00012 * 7 6 4 9 9 C 1.50697 * 109.47043 * 150.00315 * 7 6 4 10 10 H 1.08001 * 120.00106 * 359.97438 * 9 7 6 11 11 C 1.37872 * 120.00418 * 180.02562 * 9 7 6 12 12 N 1.31518 * 119.99728 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 120.00458 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46915 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47156 * 119.99844 * 13 11 9 16 16 H 1.48503 * 109.46917 * 240.00060 * 13 11 9 17 17 C 1.50707 * 109.47202 * 269.99695 * 7 6 4 18 18 C 1.34510 * 125.78575 * 145.00035 * 17 7 6 19 19 C 1.41386 * 106.83881 * 180.02562 * 18 17 7 20 20 C 1.34508 * 106.84253 * 0.02562 * 19 18 17 21 21 O 1.34295 * 125.78845 * 324.69943 * 17 7 6 22 22 C 1.46744 * 105.94868 * 180.26462 * 3 2 1 23 23 C 1.34428 * 106.37330 * 359.74781 * 22 3 2 24 24 N 1.34622 * 125.89757 * 179.82579 * 2 1 3 25 25 C 1.46500 * 124.80870 * 359.97438 * 24 2 1 26 26 C 1.52997 * 109.47473 * 119.72115 * 25 24 2 27 27 C 1.52999 * 109.46944 * 239.72460 * 25 24 2 28 28 H 1.09000 * 109.47101 * 270.17473 * 1 2 3 29 29 H 1.09002 * 109.46805 * 30.17130 * 1 2 3 30 30 H 1.08999 * 109.47179 * 150.17293 * 1 2 3 31 31 H 0.96999 * 120.00120 * 180.02562 * 12 11 9 32 32 H 1.07999 * 126.58496 * 0.04006 * 18 17 7 33 33 H 1.08006 * 126.57937 * 179.97438 * 19 18 17 34 34 H 1.07997 * 125.79356 * 180.02562 * 20 19 18 35 35 H 1.08001 * 126.80936 * 179.74588 * 22 3 2 36 36 H 1.08005 * 125.45505 * 179.97438 * 23 22 3 37 37 H 1.09002 * 109.47129 * 359.71858 * 25 24 2 38 38 H 1.09002 * 109.47153 * 59.99757 * 26 25 24 39 39 H 1.09001 * 109.46832 * 299.99948 * 26 25 24 40 40 H 1.09004 * 109.47261 * 179.97438 * 26 25 24 41 41 H 1.09000 * 109.47486 * 59.99569 * 27 25 24 42 42 H 1.09001 * 109.47362 * 180.02562 * 27 25 24 43 43 H 1.09002 * 109.46716 * 299.99651 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8832 2.5229 0.0005 5 8 0.6985 2.7947 0.0068 6 8 2.8011 3.5099 -0.0058 7 6 2.3025 4.8736 -0.0042 8 1 1.3449 4.9099 0.5151 9 6 3.2899 5.7686 0.6995 10 1 4.2007 5.3539 1.1053 11 6 3.0299 7.1167 0.8261 12 7 1.9205 7.6216 0.3323 13 14 4.2535 8.2259 1.6990 14 1 5.4117 7.4190 2.1602 15 1 4.7239 9.2778 0.7623 16 1 3.5971 8.8626 2.8691 17 6 2.1218 5.3441 -1.4245 18 6 1.1521 6.1665 -1.8634 19 6 1.3597 6.3407 -3.2510 20 6 2.4435 5.6140 -3.5772 21 8 2.9050 5.0178 -2.4656 22 6 3.6947 0.6161 -0.0065 23 6 3.6109 -0.7256 -0.0042 24 7 2.2964 -1.0905 0.0033 25 6 1.8124 -2.4732 0.0081 26 6 2.3183 -3.1951 -1.2424 27 6 2.3307 -3.1907 1.2560 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8885 -0.5165 30 1 -0.3633 -0.8915 -0.5111 31 1 1.7378 8.5701 0.4210 32 1 0.3659 6.6090 -1.2697 33 1 0.7622 6.9415 -3.9208 34 1 2.8734 5.5291 -4.5643 35 1 4.5979 1.2082 -0.0121 36 1 4.4499 -1.4057 -0.0080 37 1 0.7224 -2.4766 0.0135 38 1 3.4083 -3.1917 -1.2479 39 1 1.9490 -2.6839 -2.1315 40 1 1.9585 -4.2240 -1.2386 41 1 1.9703 -2.6765 2.1469 42 1 1.9710 -4.2197 1.2594 43 1 3.4207 -3.1874 1.2506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:22 Heat of formation + Delta-G solvation = -45.622404 kcal Electronic energy + Delta-G solvation = -26631.803099 eV Core-core repulsion = 22837.071949 eV Total energy + Delta-G solvation = -3794.731151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.15939 -42.44779 -40.71520 -37.38869 -36.14625 -35.26997 -33.51389 -32.64882 -31.73558 -30.73605 -28.61197 -28.16307 -27.51850 -25.36016 -23.87373 -23.12825 -22.35902 -21.49872 -20.70088 -19.55268 -18.94518 -18.28782 -18.20875 -17.51970 -16.99303 -16.74697 -16.48911 -16.27403 -15.96602 -15.33725 -14.85551 -14.64528 -14.49463 -14.16214 -14.00407 -13.78113 -13.67916 -13.49166 -13.47202 -13.38001 -13.17496 -13.01312 -12.98948 -12.92575 -12.81035 -12.49409 -12.19677 -12.18349 -11.94883 -11.94317 -11.34750 -11.25514 -10.80616 -10.49739 -9.62976 -9.15799 -9.09723 -8.21902 -6.51833 0.51492 1.12224 1.38672 1.40591 1.45736 1.53599 1.69378 2.04370 2.22869 2.32495 2.45278 2.54503 3.01808 3.65029 3.71815 3.97240 3.99196 4.04047 4.13420 4.23554 4.36226 4.41641 4.51637 4.59895 4.64064 4.70898 4.71885 4.81671 4.85669 4.87356 5.00474 5.04674 5.16121 5.20911 5.26122 5.27917 5.38202 5.45483 5.49030 5.69116 5.70881 5.87979 6.00345 6.09294 6.36078 6.49642 6.63196 7.05818 7.22442 8.74254 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.003600 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.271970 B = 7776.872906 C = 8503.367854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.114 3.886 3 C -0.267 4.267 4 C 0.520 3.480 5 O -0.559 6.559 6 O -0.356 6.356 7 C 0.302 3.698 8 H 0.039 0.961 9 C -0.556 4.556 10 H 0.070 0.930 11 C 0.024 3.976 12 N -0.890 5.890 13 Si 0.983 3.017 14 H -0.264 1.264 15 H -0.275 1.275 16 H -0.269 1.269 17 C -0.007 4.007 18 C -0.189 4.189 19 C -0.227 4.227 20 C -0.074 4.074 21 O -0.198 6.198 22 C -0.171 4.171 23 C 0.002 3.998 24 N -0.422 5.422 25 C 0.111 3.889 26 C -0.159 4.159 27 C -0.159 4.159 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.271 0.729 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.239 0.761 35 H 0.142 0.858 36 H 0.206 0.794 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 -22.187 -3.269 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.005 4.005 3 C -0.275 4.275 4 C 0.369 3.631 5 O -0.453 6.453 6 O -0.272 6.272 7 C 0.248 3.752 8 H 0.057 0.943 9 C -0.592 4.592 10 H 0.089 0.911 11 C -0.179 4.179 12 N -0.525 5.525 13 Si 0.806 3.194 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.194 1.194 17 C -0.058 4.058 18 C -0.209 4.209 19 C -0.246 4.246 20 C -0.140 4.140 21 O -0.095 6.095 22 C -0.194 4.194 23 C -0.123 4.123 24 N -0.098 5.098 25 C 0.011 3.989 26 C -0.217 4.217 27 C -0.216 4.216 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.185 0.815 34 H 0.256 0.744 35 H 0.160 0.840 36 H 0.223 0.777 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.326 -22.458 -3.259 22.696 hybrid contribution 0.098 1.764 0.367 1.804 sum 0.424 -20.694 -2.892 20.900 Atomic orbital electron populations 1.20582 0.85923 1.04339 1.04037 1.20678 0.94381 0.85054 1.00419 1.19657 0.96092 0.87787 1.23974 1.20936 0.83614 0.87032 0.71480 1.90682 1.19260 1.85433 1.49960 1.86597 1.40111 1.17411 1.83099 1.18731 0.96513 0.74461 0.85524 0.94313 1.21171 1.06863 0.93241 1.37961 0.91149 1.25851 0.97950 0.98595 0.95539 1.70179 1.25098 1.14161 1.43060 0.85134 0.78410 0.77775 0.78093 1.18771 1.20021 1.19357 1.23389 0.91148 1.02180 0.89038 1.21338 1.02018 1.02654 0.94895 1.22061 1.01500 1.05688 0.95359 1.24682 0.98293 0.99950 0.91090 1.83968 1.49021 1.59694 1.16838 1.22184 0.95010 0.94756 1.07487 1.21969 0.86615 0.94979 1.08768 1.44125 1.05461 1.06295 1.53924 1.21966 1.01449 0.76790 0.98676 1.22181 1.02731 1.01641 0.95124 1.22169 1.02649 1.01644 0.95137 0.89562 0.91156 0.88056 0.91980 0.85529 0.81517 0.74445 0.83971 0.77717 0.86927 0.91160 0.92937 0.87967 0.92938 0.87981 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.39 9.35 71.24 0.67 -1.72 16 2 C 0.11 3.49 6.93 42.04 0.29 3.78 16 3 C -0.27 -10.67 6.33 -18.82 -0.12 -10.79 16 4 C 0.52 26.39 7.92 70.15 0.56 26.95 16 5 O -0.56 -30.18 14.14 19.69 0.28 -29.90 16 6 O -0.36 -19.96 9.74 -54.32 -0.53 -20.48 16 7 C 0.30 18.17 2.42 29.10 0.07 18.24 16 8 H 0.04 2.56 7.16 -2.39 -0.02 2.54 16 9 C -0.56 -33.69 8.89 25.60 0.23 -33.47 16 10 H 0.07 4.22 7.81 -2.91 -0.02 4.20 16 11 C 0.02 1.36 5.30 84.65 0.45 1.80 16 12 N -0.89 -52.24 10.48 21.45 0.22 -52.02 16 13 Si 0.98 44.83 29.54 68.60 2.03 46.85 16 14 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 17 C -0.01 -0.41 5.67 24.83 0.14 -0.27 16 18 C -0.19 -10.25 9.04 22.19 0.20 -10.05 16 19 C -0.23 -9.99 10.91 22.19 0.24 -9.75 16 20 C -0.07 -3.09 12.09 66.97 0.81 -2.28 16 21 O -0.20 -10.46 10.64 0.83 0.01 -10.45 16 22 C -0.17 -5.69 11.00 23.62 0.26 -5.43 16 23 C 0.00 0.06 10.14 83.11 0.84 0.90 16 24 N -0.42 -9.28 2.56 -486.72 -1.25 -10.53 16 25 C 0.11 1.35 3.44 44.99 0.15 1.51 16 26 C -0.16 -1.41 9.22 71.98 0.66 -0.75 16 27 C -0.16 -1.41 9.22 71.98 0.66 -0.75 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 2.34 6.53 -2.39 -0.02 2.32 16 30 H 0.10 1.75 6.97 -2.39 -0.02 1.73 16 31 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.13 7.19 7.49 -2.91 -0.02 7.17 16 33 H 0.17 5.92 8.06 -2.91 -0.02 5.89 16 34 H 0.24 6.89 8.06 -2.91 -0.02 6.87 16 35 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.21 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.11 1.13 6.48 -2.39 -0.02 1.12 16 38 H 0.07 0.60 7.88 -2.39 -0.02 0.58 16 39 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 0.60 7.88 -2.39 -0.02 0.58 16 Total: -1.00 -81.17 365.74 7.89 -73.28 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.01 Total: 25.33 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 6.12 Total: -22.08 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -1.02 Total: -62.55 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: -0.24 Total: -60.83 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -81.17 7.89 -73.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.653 kcal (2) G-P(sol) polarization free energy of solvation -81.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds