Wall clock time and date at job start Tue Mar 31 2020 11:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48495 * 109.47223 * 239.99887 * 3 2 1 5 5 H 1.48506 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47093 * 119.99466 * 3 2 1 7 7 C 1.38698 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00226 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99415 * 0.02562 * 7 2 1 10 10 C 1.35520 * 116.99699 * 185.06500 * 9 7 2 11 11 C 1.38833 * 120.16154 * 354.39957 * 10 9 7 12 12 C 1.38025 * 120.06893 * 180.27486 * 11 10 9 13 13 C 1.38573 * 120.40305 * 359.74675 * 12 11 10 14 14 C 1.37828 * 120.32261 * 359.97438 * 13 12 11 15 15 C 1.39662 * 119.91967 * 0.02562 * 14 13 12 16 16 C 1.47532 * 120.19709 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00353 * 180.02562 * 16 15 14 18 18 N 1.34782 * 119.99881 * 359.97438 * 16 15 14 19 19 C 1.46497 * 119.99747 * 179.97438 * 18 16 15 20 20 H 1.09000 * 115.55892 * 350.69194 * 19 18 16 21 21 C 1.53069 * 117.50438 * 136.38984 * 19 18 16 22 22 C 1.52726 * 59.96259 * 107.48527 * 21 19 18 23 23 C 1.53250 * 117.82598 * 252.15814 * 22 21 19 24 24 C 1.53325 * 108.48633 * 265.29987 * 23 22 21 25 25 O 1.42870 * 109.32748 * 306.04057 * 24 23 22 26 26 C 1.42863 * 114.52960 * 64.35467 * 25 24 23 27 27 C 1.53248 * 117.82845 * 107.88173 * 22 21 19 28 28 H 0.97003 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.96599 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.79753 * 179.72007 * 12 11 10 31 31 H 1.08001 * 119.83689 * 179.97438 * 13 12 11 32 32 H 1.07999 * 120.03506 * 180.02562 * 14 13 12 33 33 H 0.96995 * 120.00002 * 0.02562 * 18 16 15 34 34 H 1.08995 * 117.51102 * 214.96193 * 21 19 18 35 35 H 1.09003 * 117.50787 * 0.02562 * 21 19 18 36 36 H 1.08996 * 109.63451 * 25.00237 * 23 22 21 37 37 H 1.09007 * 109.63507 * 145.60380 * 23 22 21 38 38 H 1.09004 * 109.49789 * 186.08306 * 24 23 22 39 39 H 1.09003 * 109.49872 * 65.99602 * 24 23 22 40 40 H 1.08999 * 109.50262 * 175.69118 * 26 25 24 41 41 H 1.09000 * 109.49755 * 55.59568 * 26 25 24 42 42 H 1.09006 * 109.63584 * 214.40166 * 27 22 21 43 43 H 1.09005 * 109.63354 * 334.79509 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5028 0.1077 11 6 3.4555 -3.4401 0.0943 12 6 4.2011 -4.5970 0.1978 13 6 3.5743 -5.8267 0.3209 14 6 2.1985 -5.9074 0.3418 15 6 1.4309 -4.7453 0.2380 16 6 -0.0422 -4.8247 0.2591 17 8 -0.7071 -3.8109 0.1680 18 7 -0.6509 -6.0213 0.3784 19 6 -2.1136 -6.1001 0.3999 20 1 -2.6349 -5.1457 0.4743 21 6 -2.7744 -7.2037 -0.4298 22 6 -2.7457 -7.3060 1.0938 23 6 -1.8090 -8.3424 1.7236 24 6 -2.6082 -9.6244 1.9857 25 8 -3.7663 -9.3094 2.7608 26 6 -4.7063 -8.4577 2.1035 27 6 -4.0610 -7.0901 1.8501 28 1 -0.4850 0.8401 -0.0004 29 1 3.9514 -2.4855 -0.0013 30 1 5.2797 -4.5435 0.1824 31 1 4.1667 -6.7262 0.4009 32 1 1.7148 -6.8682 0.4384 33 1 -0.1205 -6.8302 0.4507 34 1 -3.7303 -6.9753 -0.9011 35 1 -2.1207 -7.8712 -0.9913 36 1 -0.9871 -8.5564 1.0404 37 1 -1.4160 -7.9570 2.6646 38 1 -1.9874 -10.3350 2.5315 39 1 -2.9144 -10.0628 1.0359 40 1 -5.5870 -8.3332 2.7335 41 1 -4.9986 -8.9037 1.1529 42 1 -3.8598 -6.5980 2.8018 43 1 -4.7300 -6.4712 1.2522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361390612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:15 Heat of formation + Delta-G solvation = -54.814132 kcal Electronic energy + Delta-G solvation = -26287.345627 eV Core-core repulsion = 22492.215893 eV Total energy + Delta-G solvation = -3795.129734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23013 -39.39597 -38.08738 -36.65600 -36.32437 -32.90869 -32.35047 -31.40910 -30.60352 -29.44201 -28.93955 -25.42184 -24.00699 -23.56220 -23.43607 -21.91086 -21.02680 -19.91377 -18.98328 -18.06065 -17.66767 -16.43489 -16.32443 -16.09316 -15.56532 -15.06727 -14.68495 -14.53346 -14.30695 -14.21733 -13.99309 -13.93515 -13.65936 -13.30767 -13.07888 -12.77493 -12.51922 -12.51444 -12.04918 -11.73023 -11.52191 -11.50003 -11.27277 -11.15089 -10.90352 -10.85646 -10.83394 -10.62285 -10.49176 -10.13150 -9.60182 -9.56691 -8.90332 -8.88662 -8.36680 -8.22632 -7.33461 -6.45999 -4.06131 1.67832 2.29442 3.10779 3.12912 3.15376 3.45759 3.53379 3.68742 3.91308 3.92948 4.51519 4.59225 4.62815 4.70227 4.84530 4.90977 5.01106 5.04751 5.15506 5.23843 5.34523 5.40805 5.42310 5.47921 5.48928 5.50498 5.68308 5.71109 5.77810 5.85775 5.94036 6.06197 6.09015 6.10290 6.20035 6.53540 6.65838 6.87786 6.94008 7.02039 7.03579 7.21474 7.27078 7.66672 7.89907 8.06859 8.93274 9.04920 9.65184 10.67620 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.003320 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.577634 B = 8430.709337 C = 9791.123312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.405 4.405 8 H 0.094 0.906 9 O -0.123 6.123 10 C 0.190 3.810 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.228 4.228 16 C 0.558 3.442 17 O -0.498 6.498 18 N -0.714 5.714 19 C 0.111 3.889 20 H 0.137 0.863 21 C -0.188 4.188 22 C -0.143 4.143 23 C -0.117 4.117 24 C 0.066 3.934 25 O -0.385 6.385 26 C 0.066 3.934 27 C -0.116 4.116 28 H 0.272 0.728 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.392 0.608 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 -16.636 1.757 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.481 4.481 8 H 0.111 0.889 9 O -0.021 6.021 10 C 0.130 3.870 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.233 4.233 16 C 0.348 3.652 17 O -0.372 6.372 18 N -0.367 5.367 19 C 0.004 3.996 20 H 0.155 0.845 21 C -0.227 4.227 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.011 4.011 25 O -0.304 6.304 26 C -0.011 4.011 27 C -0.154 4.154 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.228 0.772 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.009 -15.636 1.842 16.247 hybrid contribution 0.955 0.430 -0.355 1.105 sum -3.054 -15.207 1.487 15.581 Atomic orbital electron populations 1.70118 1.05983 1.27872 1.42339 1.25386 0.95804 0.98959 0.96115 0.85795 0.78800 0.79638 0.79273 1.19361 1.20132 1.19337 1.21459 0.91887 0.81116 1.53594 0.88889 1.84171 1.33559 1.10990 1.73370 1.19256 0.89856 0.87369 0.90525 1.21162 0.93367 0.99354 1.11760 1.20902 0.98669 0.92295 0.95012 1.20455 0.94008 0.97148 1.13354 1.20732 0.93893 0.95391 0.95679 1.18796 0.91696 0.92234 1.20554 1.18245 0.87835 0.82651 0.76472 1.90941 1.65732 1.33756 1.46743 1.45327 1.04702 1.09319 1.77359 1.21547 0.81994 0.94812 1.01256 0.84505 1.23623 1.03108 1.03488 0.92491 1.21932 0.98159 1.00321 0.94058 1.21727 0.97232 0.94984 1.01493 1.22564 0.86936 0.95780 0.95773 1.87855 1.31726 1.67874 1.42901 1.22569 0.91519 0.89527 0.97460 1.21784 0.94629 0.97991 1.00988 0.91781 0.85033 0.87135 0.87249 0.87255 0.77241 0.88226 0.88679 0.91007 0.90260 0.88928 0.93189 0.88903 0.93173 0.90411 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.02 13.67 55.48 0.76 -24.26 16 2 C 0.05 1.26 5.49 -17.52 -0.10 1.17 16 3 Si 0.94 20.45 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 7 C -0.40 -11.44 9.49 30.90 0.29 -11.14 16 8 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 9 O -0.12 -3.62 7.84 -21.07 -0.17 -3.79 16 10 C 0.19 4.70 6.66 -38.60 -0.26 4.45 16 11 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 12 C -0.05 -0.88 10.03 -39.54 -0.40 -1.27 16 13 C -0.23 -3.74 10.02 -39.61 -0.40 -4.14 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 15 C -0.23 -4.94 5.89 -104.81 -0.62 -5.56 16 16 C 0.56 12.26 7.76 -12.47 -0.10 12.16 16 17 O -0.50 -13.60 14.73 -16.56 -0.24 -13.85 16 18 N -0.71 -11.59 5.30 -54.91 -0.29 -11.88 16 19 C 0.11 1.63 6.15 -67.99 -0.42 1.21 16 20 H 0.14 2.35 7.40 -51.93 -0.38 1.97 16 21 C -0.19 -2.11 9.84 -26.84 -0.26 -2.38 16 22 C -0.14 -1.61 2.03 -154.49 -0.31 -1.92 16 23 C -0.12 -1.17 5.33 -26.43 -0.14 -1.31 16 24 C 0.07 0.60 6.84 37.33 0.26 0.86 16 25 O -0.38 -4.24 10.69 -35.23 -0.38 -4.61 16 26 C 0.07 0.61 6.85 37.33 0.26 0.86 16 27 C -0.12 -1.20 5.92 -26.43 -0.16 -1.36 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 33 H 0.39 5.15 5.30 -40.82 -0.22 4.94 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.63 6.99 -51.93 -0.36 0.27 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 354.69 15.07 5.35 5.35 Total: -1.00 -34.56 354.69 -8.73 -43.29 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.65 Total: 9.16 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -3.08 Total: -14.83 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.47 Total: -36.14 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.79 Total: -22.25 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.56 -8.73 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361390612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.524 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds