Wall clock time and date at job start Tue Mar 31 2020 11:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48495 * 109.47223 * 239.99887 * 3 2 1 5 5 H 1.48506 * 109.46974 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47093 * 119.99466 * 3 2 1 7 7 C 1.38698 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00226 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99415 * 0.02562 * 7 2 1 10 10 C 1.35520 * 116.99699 * 185.06500 * 9 7 2 11 11 C 1.38833 * 120.16154 * 354.39957 * 10 9 7 12 12 C 1.38025 * 120.06893 * 180.27486 * 11 10 9 13 13 C 1.38573 * 120.40305 * 359.74675 * 12 11 10 14 14 C 1.37828 * 120.32261 * 359.97438 * 13 12 11 15 15 C 1.39662 * 119.91967 * 0.02562 * 14 13 12 16 16 C 1.47532 * 120.19709 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00353 * 180.02562 * 16 15 14 18 18 N 1.34782 * 119.99881 * 359.97438 * 16 15 14 19 19 C 1.46497 * 119.99747 * 179.97438 * 18 16 15 20 20 H 1.09000 * 115.55892 * 350.69194 * 19 18 16 21 21 C 1.53069 * 117.50438 * 136.38984 * 19 18 16 22 22 C 1.52726 * 59.96259 * 107.48527 * 21 19 18 23 23 C 1.53250 * 117.82598 * 252.15814 * 22 21 19 24 24 C 1.53325 * 108.48633 * 265.29987 * 23 22 21 25 25 O 1.42870 * 109.32748 * 306.04057 * 24 23 22 26 26 C 1.42863 * 114.52960 * 64.35467 * 25 24 23 27 27 C 1.53248 * 117.82845 * 107.88173 * 22 21 19 28 28 H 0.97003 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.96599 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.79753 * 179.72007 * 12 11 10 31 31 H 1.08001 * 119.83689 * 179.97438 * 13 12 11 32 32 H 1.07999 * 120.03506 * 180.02562 * 14 13 12 33 33 H 0.96995 * 120.00002 * 0.02562 * 18 16 15 34 34 H 1.08995 * 117.51102 * 214.96193 * 21 19 18 35 35 H 1.09003 * 117.50787 * 0.02562 * 21 19 18 36 36 H 1.08996 * 109.63451 * 25.00237 * 23 22 21 37 37 H 1.09007 * 109.63507 * 145.60380 * 23 22 21 38 38 H 1.09004 * 109.49789 * 186.08306 * 24 23 22 39 39 H 1.09003 * 109.49872 * 65.99602 * 24 23 22 40 40 H 1.08999 * 109.50262 * 175.69118 * 26 25 24 41 41 H 1.09000 * 109.49755 * 55.59568 * 26 25 24 42 42 H 1.09006 * 109.63584 * 214.40166 * 27 22 21 43 43 H 1.09005 * 109.63354 * 334.79509 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0686 -3.5028 0.1077 11 6 3.4555 -3.4401 0.0943 12 6 4.2011 -4.5970 0.1978 13 6 3.5743 -5.8267 0.3209 14 6 2.1985 -5.9074 0.3418 15 6 1.4309 -4.7453 0.2380 16 6 -0.0422 -4.8247 0.2591 17 8 -0.7071 -3.8109 0.1680 18 7 -0.6509 -6.0213 0.3784 19 6 -2.1136 -6.1001 0.3999 20 1 -2.6349 -5.1457 0.4743 21 6 -2.7744 -7.2037 -0.4298 22 6 -2.7457 -7.3060 1.0938 23 6 -1.8090 -8.3424 1.7236 24 6 -2.6082 -9.6244 1.9857 25 8 -3.7663 -9.3094 2.7608 26 6 -4.7063 -8.4577 2.1035 27 6 -4.0610 -7.0901 1.8501 28 1 -0.4850 0.8401 -0.0004 29 1 3.9514 -2.4855 -0.0013 30 1 5.2797 -4.5435 0.1824 31 1 4.1667 -6.7262 0.4009 32 1 1.7148 -6.8682 0.4384 33 1 -0.1205 -6.8302 0.4507 34 1 -3.7303 -6.9753 -0.9011 35 1 -2.1207 -7.8712 -0.9913 36 1 -0.9871 -8.5564 1.0404 37 1 -1.4160 -7.9570 2.6646 38 1 -1.9874 -10.3350 2.5315 39 1 -2.9144 -10.0628 1.0359 40 1 -5.5870 -8.3332 2.7335 41 1 -4.9986 -8.9037 1.1529 42 1 -3.8598 -6.5980 2.8018 43 1 -4.7300 -6.4712 1.2522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361390612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:15 Heat of formation + Delta-G solvation = -78.728647 kcal Electronic energy + Delta-G solvation = -26288.382638 eV Core-core repulsion = 22492.215893 eV Total energy + Delta-G solvation = -3796.166745 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50067 -40.78227 -39.60172 -38.06634 -37.75263 -34.44648 -34.26418 -32.20389 -31.97419 -30.60364 -30.48905 -27.39900 -25.17025 -24.67695 -24.25395 -23.43184 -22.42495 -21.47297 -19.95387 -19.82213 -19.24243 -17.96507 -17.52526 -16.94762 -16.70955 -16.33162 -16.15950 -16.01930 -15.80832 -15.75804 -15.37180 -15.16794 -14.94458 -14.79926 -14.35263 -14.26018 -13.93455 -13.55967 -13.32159 -13.04490 -12.98923 -12.70491 -12.59748 -12.48366 -12.37731 -12.31167 -12.16025 -11.65713 -11.46880 -11.44012 -11.09328 -10.83424 -10.67467 -10.47972 -9.91042 -9.52051 -9.04510 -8.45490 -6.16895 0.09611 0.71358 1.31511 1.44593 1.49540 2.00311 2.12017 2.15578 2.74603 2.89593 2.98654 3.21889 3.44750 3.56039 3.67167 3.85506 3.87941 3.91764 4.06108 4.08010 4.26521 4.29251 4.48189 4.51648 4.53159 4.60972 4.61561 4.73159 4.78844 4.80797 4.88779 4.95634 4.99291 5.06311 5.09517 5.12320 5.23371 5.25242 5.46166 5.56937 5.60863 5.68171 5.94765 6.15467 6.31269 6.64277 6.93517 7.44944 7.78975 8.74774 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.003320 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.577634 B = 8430.709337 C = 9791.123312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.022 4.022 3 Si 1.022 2.978 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.430 4.430 8 H 0.107 0.893 9 O -0.189 6.189 10 C 0.150 3.850 11 C -0.258 4.258 12 C -0.039 4.039 13 C -0.199 4.199 14 C -0.030 4.030 15 C -0.246 4.246 16 C 0.550 3.450 17 O -0.568 6.568 18 N -0.686 5.686 19 C 0.063 3.937 20 H 0.097 0.903 21 C -0.161 4.161 22 C -0.121 4.121 23 C -0.118 4.118 24 C 0.065 3.935 25 O -0.405 6.405 26 C 0.069 3.931 27 C -0.121 4.121 28 H 0.271 0.729 29 H 0.124 0.876 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.410 0.590 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -21.207 1.752 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.506 4.506 8 H 0.125 0.875 9 O -0.091 6.091 10 C 0.094 3.906 11 C -0.277 4.277 12 C -0.057 4.057 13 C -0.218 4.218 14 C -0.048 4.048 15 C -0.251 4.251 16 C 0.341 3.659 17 O -0.447 6.447 18 N -0.339 5.339 19 C -0.044 4.044 20 H 0.115 0.885 21 C -0.199 4.199 22 C -0.123 4.123 23 C -0.156 4.156 24 C -0.011 4.011 25 O -0.324 6.324 26 C -0.008 4.008 27 C -0.159 4.159 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.173 0.827 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.249 0.751 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.430 -20.344 1.846 20.478 hybrid contribution 0.293 1.344 -0.307 1.409 sum -1.137 -19.000 1.539 19.096 Atomic orbital electron populations 1.70320 1.08388 1.28649 1.46717 1.26770 0.96735 1.03137 0.95450 0.84624 0.77358 0.73825 0.80162 1.17720 1.19792 1.17818 1.22016 0.92726 0.81823 1.54003 0.87540 1.84180 1.35203 1.12191 1.77573 1.20079 0.91692 0.87530 0.91266 1.21314 0.92269 1.01039 1.13077 1.21451 1.00769 0.91238 0.92260 1.21183 0.93848 0.98499 1.08233 1.21277 0.94528 0.95444 0.93585 1.19265 0.92119 0.93044 1.20657 1.18555 0.88274 0.83267 0.75816 1.90920 1.67088 1.36502 1.50207 1.44963 1.05622 1.08087 1.75266 1.21574 0.80899 0.95043 1.06863 0.88507 1.23707 1.03095 1.00450 0.92660 1.22020 0.98037 0.97659 0.94544 1.21809 0.97625 0.95006 1.01138 1.22713 0.86429 0.95249 0.96698 1.87840 1.32502 1.67995 1.44030 1.22637 0.91454 0.88167 0.98492 1.21854 0.94637 0.99236 1.00181 0.92030 0.85849 0.82738 0.81671 0.82413 0.75065 0.87121 0.86644 0.89072 0.91548 0.87201 0.91614 0.87674 0.91583 0.92047 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.68 13.67 21.62 0.30 -59.38 16 2 C -0.02 -1.29 5.49 84.85 0.47 -0.83 16 3 Si 1.02 44.45 29.55 68.60 2.03 46.48 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.43 -26.23 9.49 67.93 0.64 -25.59 16 8 H 0.11 5.80 5.21 -2.92 -0.02 5.79 16 9 O -0.19 -12.16 7.84 0.78 0.01 -12.15 16 10 C 0.15 7.77 6.66 22.91 0.15 7.92 16 11 C -0.26 -11.03 9.16 22.36 0.20 -10.82 16 12 C -0.04 -1.20 10.03 22.30 0.22 -0.98 16 13 C -0.20 -5.23 10.02 22.25 0.22 -5.01 16 14 C -0.03 -0.90 9.53 22.52 0.21 -0.68 16 15 C -0.25 -10.78 5.89 -19.99 -0.12 -10.89 16 16 C 0.55 25.46 7.76 86.69 0.67 26.13 16 17 O -0.57 -34.20 14.73 16.91 0.25 -33.95 16 18 N -0.69 -22.21 5.30 -445.89 -2.36 -24.57 16 19 C 0.06 1.88 6.15 44.95 0.28 2.16 16 20 H 0.10 3.72 7.40 -2.39 -0.02 3.70 16 21 C -0.16 -3.29 9.84 30.53 0.30 -2.99 16 22 C -0.12 -2.56 2.03 -52.17 -0.11 -2.67 16 23 C -0.12 -2.02 5.33 30.79 0.16 -1.85 16 24 C 0.07 0.95 6.84 72.09 0.49 1.44 16 25 O -0.40 -7.86 10.69 -148.98 -1.59 -9.45 16 26 C 0.07 1.12 6.85 72.09 0.49 1.61 16 27 C -0.12 -2.44 5.92 30.79 0.18 -2.26 16 28 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 29 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 30 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.16 3.13 6.40 -2.91 -0.02 3.11 16 33 H 0.41 9.65 5.30 -92.71 -0.49 9.16 16 34 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.18 6.99 -2.39 -0.02 1.17 16 37 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.08 1.55 8.08 -2.38 -0.02 1.54 16 Total: -1.00 -89.37 354.69 3.66 -85.70 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.55 Total: 32.64 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 4.49 Total: -25.31 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.07 Total: -83.95 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.34 Total: -55.55 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -89.37 3.66 -85.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361390612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.974 kcal (2) G-P(sol) polarization free energy of solvation -89.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds