Wall clock time and date at job start Tue Mar 31 2020 12:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.41076 * 2 1 4 4 O 1.21283 * 120.00301 * 240.00058 * 3 2 1 5 5 N 1.34783 * 119.99776 * 60.00551 * 3 2 1 6 6 C 1.39924 * 119.99668 * 175.49092 * 5 3 2 7 7 C 1.38962 * 120.03953 * 35.10289 * 6 5 3 8 8 C 1.38154 * 120.06911 * 180.02562 * 7 6 5 9 9 C 1.38167 * 120.13792 * 359.71615 * 8 7 6 10 10 C 1.38909 * 120.07047 * 0.56167 * 9 8 7 11 11 O 1.35754 * 120.03601 * 179.71714 * 10 9 8 12 12 C 1.34829 * 116.99851 * 174.38401 * 11 10 9 13 13 H 1.07994 * 120.00454 * 5.03519 * 12 11 10 14 14 C 1.38658 * 119.99611 * 185.03404 * 12 11 10 15 15 N 1.31559 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99913 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47298 * 60.00383 * 16 14 12 18 18 H 1.48498 * 109.47410 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47375 * 300.00031 * 16 14 12 20 20 C 1.38712 * 120.03469 * 215.12032 * 6 5 3 21 21 C 1.52960 * 109.41305 * 119.86179 * 2 1 3 22 22 C 1.53088 * 109.47362 * 183.71167 * 21 2 1 23 23 C 1.51272 * 108.49583 * 305.31717 * 22 21 2 24 24 O 1.20763 * 120.85194 * 231.37915 * 23 22 21 25 25 C 1.51268 * 118.29964 * 51.35566 * 23 22 21 26 26 C 1.52961 * 109.41161 * 240.14453 * 2 1 3 27 27 H 1.08993 * 109.47498 * 59.99901 * 1 2 3 28 28 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46944 * 299.99173 * 1 2 3 30 30 H 0.96999 * 120.00196 * 355.48539 * 5 3 2 31 31 H 1.08004 * 119.96122 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.93268 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.96816 * 180.29671 * 9 8 7 34 34 H 0.97000 * 119.99266 * 179.97438 * 15 14 12 35 35 H 1.08008 * 120.06760 * 0.02562 * 20 6 5 36 36 H 1.09002 * 109.48038 * 303.61320 * 21 2 1 37 37 H 1.08998 * 109.48326 * 63.65735 * 21 2 1 38 38 H 1.09004 * 109.64078 * 185.62466 * 22 21 2 39 39 H 1.08998 * 109.81264 * 65.11763 * 22 21 2 40 40 H 1.09009 * 109.62324 * 188.93693 * 25 23 22 41 41 H 1.08999 * 109.78087 * 68.46366 * 25 23 22 42 42 H 1.09000 * 109.47926 * 296.34289 * 26 2 1 43 43 H 1.08998 * 109.47858 * 56.37054 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0309 1.4213 0.0000 4 8 2.7278 1.8188 -0.9096 5 7 1.7045 2.2508 1.0109 6 6 2.2454 3.5404 1.0602 7 6 2.4743 4.2441 -0.1160 8 6 3.0088 5.5171 -0.0682 9 6 3.3120 6.0969 1.1488 10 6 3.0909 5.3965 2.3278 11 8 3.3944 5.9646 3.5228 12 6 3.0484 5.2799 4.6316 13 1 2.6271 4.2893 4.5450 14 6 3.2334 5.8477 5.8829 15 7 3.7471 7.0542 5.9883 16 14 2.7548 4.8988 7.4191 17 1 3.5299 3.6336 7.4811 18 1 3.0514 5.7197 8.6205 19 1 1.3032 4.5885 7.3771 20 6 2.5540 4.1176 2.2831 21 6 2.0385 -0.7183 1.2511 22 6 3.5665 -0.6386 1.2999 23 6 4.1173 -1.1857 0.0016 24 8 4.9734 -2.0375 0.0021 25 6 3.5679 -0.6390 -1.2974 26 6 2.0384 -0.7182 -1.2512 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.0946 1.9539 1.7043 31 1 2.2348 3.7949 -1.0686 32 1 3.1854 6.0622 -0.9836 33 1 3.7253 7.0941 1.1832 34 1 3.8762 7.4515 6.8638 35 1 2.3777 3.5724 3.1987 36 1 1.6228 -0.2410 2.1385 37 1 1.7293 -1.7631 1.2214 38 1 3.9379 -1.2332 2.1345 39 1 3.8786 0.3986 1.4218 40 1 3.9403 -1.2338 -2.1316 41 1 3.8773 0.3988 -1.4210 42 1 1.7292 -1.7630 -1.2215 43 1 1.6225 -0.2409 -2.1385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362111501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:49 Heat of formation + Delta-G solvation = -81.016570 kcal Electronic energy + Delta-G solvation = -26838.494662 eV Core-core repulsion = 23042.228706 eV Total energy + Delta-G solvation = -3796.265957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35160 -39.52012 -38.73745 -37.01800 -36.08938 -34.47023 -32.29448 -31.60147 -31.45106 -29.32862 -28.55213 -25.76172 -25.38366 -23.78664 -23.59737 -21.87088 -21.31274 -20.03293 -19.34244 -17.98620 -17.55708 -16.67190 -16.10800 -15.65222 -15.57685 -15.44821 -15.01920 -14.71538 -14.58939 -14.43779 -14.23911 -13.91994 -13.63160 -13.12551 -13.05930 -12.97332 -12.83088 -12.57085 -12.45198 -12.31795 -11.86119 -11.73548 -11.67498 -11.46850 -11.13258 -11.07002 -10.98679 -10.93439 -10.83748 -10.50935 -9.90359 -9.58859 -9.52236 -9.27584 -8.84721 -7.80820 -7.21998 -6.48983 -4.09209 1.83210 1.89406 2.32237 2.70495 3.08220 3.08793 3.12637 3.12998 3.91730 3.95688 4.14070 4.24945 4.36319 4.53665 4.72889 4.73772 4.98591 4.99176 5.05219 5.15338 5.21765 5.23871 5.33304 5.37661 5.44280 5.57862 5.65541 5.69998 5.72943 5.76595 5.91911 5.95912 5.96940 6.09658 6.20927 6.24358 6.58880 6.89911 6.93334 7.06500 7.26232 7.36949 7.37291 7.60610 7.75178 7.94617 8.20522 8.96059 9.66041 10.68880 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.003753 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.776372 B = 7458.594787 C = 8342.907912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C 0.522 3.478 4 O -0.515 6.515 5 N -0.665 5.665 6 C 0.175 3.825 7 C -0.205 4.205 8 C -0.065 4.065 9 C -0.198 4.198 10 C 0.167 3.833 11 O -0.176 6.176 12 C -0.394 4.394 13 H 0.090 0.910 14 C 0.041 3.959 15 N -0.861 5.861 16 Si 0.940 3.060 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 C -0.256 4.256 21 C -0.101 4.101 22 C -0.179 4.179 23 C 0.365 3.635 24 O -0.465 6.465 25 C -0.187 4.187 26 C -0.084 4.084 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.406 0.594 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.271 0.729 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.073 0.927 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -14.618 -10.115 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C 0.309 3.691 4 O -0.391 6.391 5 N -0.309 5.309 6 C 0.082 3.918 7 C -0.226 4.226 8 C -0.084 4.084 9 C -0.218 4.218 10 C 0.113 3.887 11 O -0.079 6.079 12 C -0.470 4.470 13 H 0.107 0.893 14 C -0.164 4.164 15 N -0.496 5.496 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.278 4.278 21 C -0.139 4.139 22 C -0.217 4.217 23 C 0.241 3.759 24 O -0.339 6.339 25 C -0.224 4.224 26 C -0.122 4.122 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.241 0.759 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.151 0.849 42 H 0.092 0.908 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.967 -14.454 -10.502 19.177 hybrid contribution -0.584 -0.539 1.296 1.521 sum -7.551 -14.993 -9.206 19.146 Atomic orbital electron populations 1.21867 0.91671 1.03311 1.03113 1.20954 0.97694 0.92351 0.97869 1.20475 0.79965 0.86902 0.81743 1.90589 1.37107 1.76438 1.34935 1.43489 1.47131 1.12925 1.27319 1.17423 0.97128 0.83208 0.93995 1.20674 1.09459 0.95440 0.96979 1.20563 0.97161 0.94352 0.96329 1.20283 1.10169 1.01053 0.90317 1.19071 0.91580 0.90566 0.87490 1.84010 1.68956 1.44532 1.10395 1.21213 1.43567 1.00166 0.82057 0.89299 1.25272 0.96635 0.96167 0.98329 1.70026 1.40507 1.13934 1.25132 0.85809 0.79100 0.78950 0.79724 1.19547 1.20230 1.19530 1.20816 1.12146 0.98230 0.96569 1.21581 0.93829 1.01695 0.96786 1.22367 0.96942 1.04467 0.97874 1.24916 0.79097 0.78889 0.93005 1.90392 1.26606 1.26702 1.90184 1.22676 0.96833 1.06562 0.96378 1.21336 0.94024 1.00111 0.96733 0.91472 0.90983 0.91669 0.75896 0.85801 0.86651 0.86419 0.91922 0.85296 0.89911 0.89937 0.88755 0.88071 0.89658 0.84857 0.90850 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.36 37.16 0.31 -0.58 16 2 C -0.09 -0.72 0.62 -155.70 -0.10 -0.82 16 3 C 0.52 6.41 4.74 -10.98 -0.05 6.35 16 4 O -0.52 -7.83 10.87 5.55 0.06 -7.77 16 5 N -0.66 -8.70 5.13 -9.88 -0.05 -8.75 16 6 C 0.18 3.08 6.29 -83.72 -0.53 2.55 16 7 C -0.20 -3.67 8.70 -39.34 -0.34 -4.01 16 8 C -0.07 -1.18 10.03 -39.64 -0.40 -1.57 16 9 C -0.20 -4.13 9.99 -39.36 -0.39 -4.52 16 10 C 0.17 3.91 6.65 -39.13 -0.26 3.65 16 11 O -0.18 -4.87 9.76 0.04 0.00 -4.87 16 12 C -0.39 -10.61 9.49 30.89 0.29 -10.31 16 13 H 0.09 2.17 5.20 -52.49 -0.27 1.90 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 15 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 16 Si 0.94 19.79 29.55 -169.99 -5.02 14.77 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 C -0.26 -5.22 9.08 -39.21 -0.36 -5.58 16 21 C -0.10 -0.79 4.65 -26.71 -0.12 -0.91 16 22 C -0.18 -1.89 5.78 -27.56 -0.16 -2.05 16 23 C 0.36 4.50 6.72 -28.48 -0.19 4.31 16 24 O -0.46 -7.22 17.89 6.00 0.11 -7.11 16 25 C -0.19 -2.03 5.73 -27.49 -0.16 -2.19 16 26 C -0.08 -0.71 4.45 -26.64 -0.12 -0.83 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.37 7.46 -51.93 -0.39 -0.02 16 30 H 0.41 4.17 7.72 -40.82 -0.32 3.86 16 31 H 0.12 2.15 6.22 -52.48 -0.33 1.82 16 32 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.13 2.56 5.64 -52.48 -0.30 2.27 16 36 H 0.08 0.55 7.76 -51.93 -0.40 0.15 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.23 7.33 -51.93 -0.38 0.85 16 40 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.13 1.72 5.38 -51.93 -0.28 1.44 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -32.69 349.09 -7.16 -39.84 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.60 Total: 8.13 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.67 Total: -15.52 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.71 Total: -32.73 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.69 -7.16 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362111501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.172 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds