Wall clock time and date at job start Tue Mar 31 2020 12:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.41076 * 2 1 4 4 O 1.21283 * 120.00301 * 240.00058 * 3 2 1 5 5 N 1.34783 * 119.99776 * 60.00551 * 3 2 1 6 6 C 1.39924 * 119.99668 * 175.49092 * 5 3 2 7 7 C 1.38962 * 120.03953 * 35.10289 * 6 5 3 8 8 C 1.38154 * 120.06911 * 180.02562 * 7 6 5 9 9 C 1.38167 * 120.13792 * 359.71615 * 8 7 6 10 10 C 1.38909 * 120.07047 * 0.56167 * 9 8 7 11 11 O 1.35754 * 120.03601 * 179.71714 * 10 9 8 12 12 C 1.34829 * 116.99851 * 174.38401 * 11 10 9 13 13 H 1.07994 * 120.00454 * 5.03519 * 12 11 10 14 14 C 1.38658 * 119.99611 * 185.03404 * 12 11 10 15 15 N 1.31559 * 119.99726 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99913 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47298 * 60.00383 * 16 14 12 18 18 H 1.48498 * 109.47410 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47375 * 300.00031 * 16 14 12 20 20 C 1.38712 * 120.03469 * 215.12032 * 6 5 3 21 21 C 1.52960 * 109.41305 * 119.86179 * 2 1 3 22 22 C 1.53088 * 109.47362 * 183.71167 * 21 2 1 23 23 C 1.51272 * 108.49583 * 305.31717 * 22 21 2 24 24 O 1.20763 * 120.85194 * 231.37915 * 23 22 21 25 25 C 1.51268 * 118.29964 * 51.35566 * 23 22 21 26 26 C 1.52961 * 109.41161 * 240.14453 * 2 1 3 27 27 H 1.08993 * 109.47498 * 59.99901 * 1 2 3 28 28 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46944 * 299.99173 * 1 2 3 30 30 H 0.96999 * 120.00196 * 355.48539 * 5 3 2 31 31 H 1.08004 * 119.96122 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.93268 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.96816 * 180.29671 * 9 8 7 34 34 H 0.97000 * 119.99266 * 179.97438 * 15 14 12 35 35 H 1.08008 * 120.06760 * 0.02562 * 20 6 5 36 36 H 1.09002 * 109.48038 * 303.61320 * 21 2 1 37 37 H 1.08998 * 109.48326 * 63.65735 * 21 2 1 38 38 H 1.09004 * 109.64078 * 185.62466 * 22 21 2 39 39 H 1.08998 * 109.81264 * 65.11763 * 22 21 2 40 40 H 1.09009 * 109.62324 * 188.93693 * 25 23 22 41 41 H 1.08999 * 109.78087 * 68.46366 * 25 23 22 42 42 H 1.09000 * 109.47926 * 296.34289 * 26 2 1 43 43 H 1.08998 * 109.47858 * 56.37054 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0309 1.4213 0.0000 4 8 2.7278 1.8188 -0.9096 5 7 1.7045 2.2508 1.0109 6 6 2.2454 3.5404 1.0602 7 6 2.4743 4.2441 -0.1160 8 6 3.0088 5.5171 -0.0682 9 6 3.3120 6.0969 1.1488 10 6 3.0909 5.3965 2.3278 11 8 3.3944 5.9646 3.5228 12 6 3.0484 5.2799 4.6316 13 1 2.6271 4.2893 4.5450 14 6 3.2334 5.8477 5.8829 15 7 3.7471 7.0542 5.9883 16 14 2.7548 4.8988 7.4191 17 1 3.5299 3.6336 7.4811 18 1 3.0514 5.7197 8.6205 19 1 1.3032 4.5885 7.3771 20 6 2.5540 4.1176 2.2831 21 6 2.0385 -0.7183 1.2511 22 6 3.5665 -0.6386 1.2999 23 6 4.1173 -1.1857 0.0016 24 8 4.9734 -2.0375 0.0021 25 6 3.5679 -0.6390 -1.2974 26 6 2.0384 -0.7182 -1.2512 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.0946 1.9539 1.7043 31 1 2.2348 3.7949 -1.0686 32 1 3.1854 6.0622 -0.9836 33 1 3.7253 7.0941 1.1832 34 1 3.8762 7.4515 6.8638 35 1 2.3777 3.5724 3.1987 36 1 1.6228 -0.2410 2.1385 37 1 1.7293 -1.7631 1.2214 38 1 3.9379 -1.2332 2.1345 39 1 3.8786 0.3986 1.4218 40 1 3.9403 -1.2338 -2.1316 41 1 3.8773 0.3988 -1.4210 42 1 1.7292 -1.7630 -1.2215 43 1 1.6225 -0.2409 -2.1385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362111501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:48 Heat of formation + Delta-G solvation = -101.800111 kcal Electronic energy + Delta-G solvation = -26839.395904 eV Core-core repulsion = 23042.228706 eV Total energy + Delta-G solvation = -3797.167199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32665 -40.86739 -40.12865 -38.41576 -37.21310 -35.75999 -34.21763 -32.40726 -32.27927 -30.84558 -30.08347 -27.31387 -26.39119 -24.87677 -24.35122 -23.47485 -22.59925 -21.06902 -20.49527 -19.60504 -19.13157 -17.71749 -17.28311 -16.87202 -16.79291 -16.52683 -16.41350 -15.93984 -15.84700 -15.65615 -15.48729 -15.27239 -15.05780 -14.52911 -14.32763 -13.84001 -13.69168 -13.60201 -13.51006 -13.32312 -13.09434 -13.03784 -12.72856 -12.64895 -12.46718 -12.41077 -12.27190 -12.13571 -11.71717 -11.68175 -11.41981 -11.17853 -10.73595 -10.52015 -10.34719 -9.33001 -8.86199 -8.44568 -6.13567 0.41932 0.72306 0.86175 1.37284 1.47470 1.53511 1.61419 2.05747 2.19570 2.85433 3.07994 3.18123 3.41744 3.49275 3.52177 3.67020 3.93426 4.00557 4.14401 4.21977 4.25400 4.35792 4.44210 4.48666 4.56992 4.66164 4.66890 4.76365 4.84318 4.90449 4.95454 5.02437 5.03834 5.04673 5.12863 5.22049 5.24487 5.35673 5.42900 5.52046 5.69115 5.70464 6.03295 6.20527 6.40922 6.49224 6.99724 7.15771 7.79945 8.78312 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.003753 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.776372 B = 7458.594787 C = 8342.907912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C 0.520 3.480 4 O -0.544 6.544 5 N -0.658 5.658 6 C 0.188 3.812 7 C -0.198 4.198 8 C -0.055 4.055 9 C -0.216 4.216 10 C 0.132 3.868 11 O -0.229 6.229 12 C -0.413 4.413 13 H 0.106 0.894 14 C -0.023 4.023 15 N -0.921 5.921 16 Si 1.017 2.983 17 H -0.258 1.258 18 H -0.276 1.276 19 H -0.252 1.252 20 C -0.259 4.259 21 C -0.098 4.098 22 C -0.179 4.179 23 C 0.365 3.635 24 O -0.503 6.503 25 C -0.187 4.187 26 C -0.082 4.082 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.421 0.579 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.114 0.886 34 H 0.272 0.728 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -17.698 -10.885 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C 0.310 3.690 4 O -0.421 6.421 5 N -0.303 5.303 6 C 0.093 3.907 7 C -0.218 4.218 8 C -0.074 4.074 9 C -0.236 4.236 10 C 0.081 3.919 11 O -0.135 6.135 12 C -0.489 4.489 13 H 0.123 0.877 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.836 3.164 17 H -0.182 1.182 18 H -0.201 1.201 19 H -0.176 1.176 20 C -0.280 4.280 21 C -0.136 4.136 22 C -0.217 4.217 23 C 0.244 3.756 24 O -0.380 6.380 25 C -0.224 4.224 26 C -0.119 4.119 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.542 -17.575 -11.323 22.981 hybrid contribution 0.215 0.336 1.188 1.254 sum -9.327 -17.239 -10.134 22.065 Atomic orbital electron populations 1.21915 0.89157 1.05207 1.03522 1.20973 0.99441 0.89020 0.98280 1.21320 0.78972 0.88195 0.80561 1.90588 1.38204 1.77280 1.36036 1.43493 1.47183 1.11280 1.28376 1.17432 0.95632 0.84876 0.92757 1.21010 1.08003 0.95190 0.97639 1.20937 0.95460 0.94533 0.96463 1.20484 1.11067 1.01308 0.90767 1.19605 0.93052 0.92186 0.87044 1.83980 1.71503 1.46290 1.11744 1.21786 1.43638 1.00960 0.82496 0.87709 1.26592 0.96377 0.97194 1.01852 1.70189 1.43395 1.16384 1.25970 0.84668 0.79639 0.77518 0.74557 1.18202 1.20108 1.17641 1.20861 1.11959 0.97348 0.97849 1.21691 0.91288 1.03533 0.97075 1.22384 0.99314 1.02992 0.97036 1.25347 0.78030 0.77866 0.94326 1.90381 1.28179 1.28693 1.90750 1.22647 0.98948 1.05014 0.95771 1.21415 0.91766 1.01821 0.96945 0.91718 0.88393 0.90738 0.74013 0.84400 0.83202 0.86762 0.91920 0.85132 0.88155 0.87210 0.88385 0.90017 0.89345 0.86901 0.88140 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.36 71.98 0.60 -0.46 16 2 C -0.07 -0.96 0.62 -52.95 -0.03 -1.00 16 3 C 0.52 11.35 4.74 87.66 0.42 11.77 16 4 O -0.54 -15.46 10.87 -3.04 -0.03 -15.49 16 5 N -0.66 -15.49 5.13 -303.55 -1.56 -17.05 16 6 C 0.19 6.30 6.29 38.14 0.24 6.54 16 7 C -0.20 -6.71 8.70 22.42 0.19 -6.51 16 8 C -0.06 -1.93 10.03 22.23 0.22 -1.71 16 9 C -0.22 -9.20 9.99 22.41 0.22 -8.98 16 10 C 0.13 6.41 6.65 22.56 0.15 6.56 16 11 O -0.23 -13.41 9.76 -22.78 -0.22 -13.63 16 12 C -0.41 -23.05 9.49 67.92 0.64 -22.40 16 13 H 0.11 5.21 5.20 -2.91 -0.02 5.20 16 14 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 15 N -0.92 -55.56 13.67 21.61 0.30 -55.26 16 16 Si 1.02 40.94 29.55 68.60 2.03 42.96 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 20 C -0.26 -10.55 9.08 22.51 0.20 -10.35 16 21 C -0.10 -1.13 4.65 30.61 0.14 -0.99 16 22 C -0.18 -3.45 5.78 30.06 0.17 -3.27 16 23 C 0.37 8.56 6.72 29.46 0.20 8.76 16 24 O -0.50 -15.41 17.89 -1.46 -0.03 -15.44 16 25 C -0.19 -3.74 5.73 30.10 0.17 -3.57 16 26 C -0.08 -1.09 4.45 30.66 0.14 -0.96 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.07 0.46 7.46 -2.39 -0.02 0.44 16 30 H 0.42 7.27 7.72 -92.71 -0.72 6.55 16 31 H 0.14 4.39 6.22 -2.91 -0.02 4.38 16 32 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 33 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.13 5.18 5.64 -2.91 -0.02 5.16 16 36 H 0.10 0.87 7.76 -2.39 -0.02 0.85 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.08 1.92 7.33 -2.39 -0.02 1.90 16 40 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.11 2.83 5.38 -2.39 -0.01 2.82 16 42 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -76.52 349.09 4.97 -71.55 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.34 Total: 29.72 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 4.15 Total: -27.35 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.26 Total: -72.31 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.28 Total: -44.57 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -76.52 4.97 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362111501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.251 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds