Wall clock time and date at job start Tue Mar 31 2020 11:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99989 * 2 1 4 4 H 1.48501 * 109.46988 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47337 * 299.99948 * 3 2 1 6 6 H 1.48506 * 109.47387 * 60.00091 * 3 2 1 7 7 C 1.37878 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99740 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00074 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46759 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97227 * 125.00464 * 10 9 7 12 12 C 1.35245 * 107.85891 * 180.02562 * 11 10 9 13 13 C 1.40399 * 107.86631 * 359.97438 * 12 11 10 14 14 N 1.40197 * 125.97501 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99983 * 0.02562 * 14 13 12 16 16 O 1.21594 * 119.99412 * 5.11529 * 15 14 13 17 17 N 1.34770 * 120.00110 * 185.11778 * 15 14 13 18 18 C 1.47082 * 120.94738 * 174.79095 * 17 15 14 19 19 C 1.53328 * 109.24040 * 116.39397 * 18 17 15 20 20 N 1.46225 * 109.17719 * 45.64380 * 19 18 17 21 21 C 1.34795 * 128.60459 * 161.77841 * 20 19 18 22 22 N 1.30821 * 107.11897 * 179.52164 * 21 20 19 23 23 N 1.28932 * 109.74355 * 0.12619 * 22 21 20 24 24 C 1.29726 * 109.42642 * 0.11516 * 23 22 21 25 25 C 1.47521 * 120.95306 * 354.76245 * 17 15 14 26 26 N 1.31209 * 108.05519 * 0.26569 * 13 12 11 27 27 H 0.96996 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.46951 * 60.00342 * 9 7 2 29 29 H 1.08997 * 109.46928 * 299.99878 * 9 7 2 30 30 H 1.08001 * 126.07161 * 0.02562 * 11 10 9 31 31 H 1.08003 * 126.06778 * 180.02562 * 12 11 10 32 32 H 0.96995 * 120.00269 * 179.97438 * 14 13 12 33 33 H 1.09000 * 109.51252 * 356.46014 * 18 17 15 34 34 H 1.09000 * 109.54542 * 236.34427 * 18 17 15 35 35 H 1.08996 * 109.52481 * 165.54842 * 19 18 17 36 36 H 1.09001 * 109.51933 * 285.73758 * 19 18 17 37 37 H 1.08000 * 126.43750 * 359.52829 * 21 20 19 38 38 H 1.09002 * 109.95844 * 342.52687 * 25 17 15 39 39 H 1.09007 * 109.95757 * 103.70808 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.2426 -4.6228 0.8924 12 6 3.2614 -5.4426 0.5472 13 6 3.8685 -4.9143 -0.6032 14 7 4.9648 -5.4643 -1.2823 15 6 5.5302 -6.6041 -0.8377 16 8 5.0337 -7.2052 0.0954 17 7 6.6457 -7.0776 -1.4273 18 6 7.3442 -8.2549 -0.8893 19 6 7.2982 -9.3860 -1.9235 20 7 7.6349 -8.8468 -3.2403 21 6 8.0351 -9.5101 -4.3435 22 7 8.2115 -8.6196 -5.2854 23 7 7.9463 -7.4436 -4.8283 24 6 7.5942 -7.5341 -3.5830 25 6 7.2008 -6.4303 -2.6311 26 7 3.2346 -3.8123 -0.9280 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 1.5787 -4.7533 1.7342 31 1 3.5551 -6.3442 1.0641 32 1 5.3159 -5.0249 -2.0726 33 1 6.8548 -8.5807 0.0285 34 1 8.3819 -7.9978 -0.6770 35 1 8.0179 -10.1580 -1.6513 36 1 6.2962 -9.8141 -1.9506 37 1 8.1823 -10.5763 -4.4329 38 1 6.4464 -5.7928 -3.0922 39 1 8.0760 -5.8375 -2.3648 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365767485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:25 Heat of formation + Delta-G solvation = 141.227014 kcal Electronic energy + Delta-G solvation = -25504.164195 eV Core-core repulsion = 21678.580602 eV Total energy + Delta-G solvation = -3825.583593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.34549 -42.30292 -41.16669 -38.09709 -36.36401 -35.63796 -35.09468 -32.78855 -32.45577 -31.09043 -30.76945 -28.62378 -27.63886 -25.66824 -24.75459 -23.62075 -22.95678 -22.04284 -21.51599 -20.34669 -19.24077 -18.70082 -18.47506 -18.04958 -17.76836 -17.11509 -16.97098 -16.39742 -16.09142 -15.96809 -15.73632 -15.56780 -15.09632 -14.70361 -14.52773 -14.22990 -13.98158 -13.82344 -13.61474 -13.52513 -12.94996 -12.92866 -12.72587 -12.51075 -12.29933 -12.09545 -11.69052 -11.51154 -11.39927 -11.19797 -11.15194 -10.71753 -10.46468 -10.12660 -9.74496 -9.08656 -8.32400 -6.46141 0.76661 0.85768 1.06218 1.37948 1.39756 1.49627 1.52597 1.60800 1.77146 1.90311 2.30429 2.35056 2.63076 2.99567 3.00178 3.35785 3.63883 3.87797 3.93514 4.00217 4.11362 4.24801 4.27893 4.40658 4.51606 4.70438 4.73474 4.76288 4.87086 4.94131 4.97842 5.03361 5.04894 5.28567 5.46247 5.58870 5.82148 5.87621 5.93282 6.28921 6.43336 6.66654 7.06572 7.20549 7.23969 7.61844 8.75435 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.002629 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.384425 B =10645.986985 C =11429.679647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.057 3.943 12 C -0.288 4.288 13 C 0.282 3.718 14 N -0.638 5.638 15 C 0.726 3.274 16 O -0.582 6.582 17 N -0.626 5.626 18 C 0.111 3.889 19 C 0.089 3.911 20 N -0.467 5.467 21 C 0.177 3.823 22 N -0.352 5.352 23 N -0.323 5.323 24 C 0.158 3.842 25 C 0.199 3.801 26 N -0.348 5.348 27 H 0.272 0.728 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.202 0.798 31 H 0.171 0.829 32 H 0.417 0.583 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.266 0.734 38 H 0.111 0.889 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.989 -21.663 -0.205 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.319 4.319 13 C 0.026 3.974 14 N -0.291 5.291 15 C 0.427 3.573 16 O -0.458 6.458 17 N -0.364 5.364 18 C -0.011 4.011 19 C -0.033 4.033 20 N -0.158 5.158 21 C -0.111 4.111 22 N -0.190 5.190 23 N -0.163 5.163 24 C -0.113 4.113 25 C 0.074 3.926 26 N -0.179 5.179 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.219 0.781 31 H 0.188 0.812 32 H 0.256 0.744 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.172 0.828 36 H 0.116 0.884 37 H 0.281 0.719 38 H 0.129 0.871 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.656 -20.359 -1.662 26.356 hybrid contribution -0.154 0.042 0.962 0.975 sum 16.502 -20.317 -0.700 26.184 Atomic orbital electron populations 1.70000 1.07219 1.28677 1.50133 1.25738 0.95829 1.02735 0.93959 0.85303 0.78485 0.78421 0.78228 1.19783 1.20021 1.19531 1.21433 0.93411 0.90931 1.52545 0.92858 1.19339 0.85674 0.81550 0.98102 1.48828 1.23644 1.20390 1.19802 1.23190 1.00498 0.88823 0.96671 1.21662 1.02064 1.06629 1.01585 1.19059 0.90943 0.93104 0.94255 1.41559 1.30570 1.25503 1.31423 1.15436 0.80003 0.79879 0.81968 1.90858 1.63629 1.59850 1.31493 1.47305 1.26254 1.33216 1.29638 1.22135 0.99112 0.82478 0.97385 1.22795 1.05198 0.98153 0.77190 1.46338 1.49084 1.06712 1.13642 1.27194 0.99386 1.02689 0.81815 1.74427 1.21883 0.95685 1.27024 1.73988 1.17942 1.17305 1.07083 1.24954 1.04712 0.87062 0.94539 1.20313 1.01862 0.89732 0.80669 1.77259 1.04814 1.18059 1.17719 0.91879 0.96190 0.92241 0.78138 0.81156 0.74389 0.85690 0.87196 0.82773 0.88430 0.71863 0.87096 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.04 13.29 21.45 0.28 -51.76 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -30.50 9.23 25.60 0.24 -30.26 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 13.97 6.26 85.63 0.54 14.51 16 10 N -0.34 -15.89 3.67 -351.85 -1.29 -17.18 16 11 C 0.06 2.15 11.44 83.52 0.96 3.10 16 12 C -0.29 -10.66 9.61 22.11 0.21 -10.45 16 13 C 0.28 10.80 8.11 133.31 1.08 11.88 16 14 N -0.64 -18.26 5.35 -321.23 -1.72 -19.98 16 15 C 0.73 17.94 8.28 179.05 1.48 19.42 16 16 O -0.58 -17.30 12.95 -4.01 -0.05 -17.35 16 17 N -0.63 -9.75 2.97 -838.90 -2.49 -12.24 16 18 C 0.11 0.89 6.41 86.38 0.55 1.45 16 19 C 0.09 0.41 7.18 86.54 0.62 1.03 16 20 N -0.47 -5.68 3.11 -519.24 -1.62 -7.30 16 21 C 0.18 2.31 12.81 180.25 2.31 4.62 16 22 N -0.35 -8.28 12.23 -60.26 -0.74 -9.01 16 23 N -0.32 -8.19 12.21 -50.19 -0.61 -8.80 16 24 C 0.16 2.86 7.88 138.22 1.09 3.95 16 25 C 0.20 2.84 6.63 85.52 0.57 3.41 16 26 N -0.35 -15.86 12.42 -54.44 -0.68 -16.53 16 27 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 30 H 0.20 5.94 8.06 -2.91 -0.02 5.91 16 31 H 0.17 5.94 5.93 -2.91 -0.02 5.93 16 32 H 0.42 10.01 6.49 -92.71 -0.60 9.41 16 33 H 0.13 1.14 7.03 -2.39 -0.02 1.12 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.15 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.27 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.11 1.64 6.06 -2.39 -0.01 1.63 16 39 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -81.00 334.87 3.73 -77.27 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.51 Total: 13.33 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 10.11 Total: 24.10 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -8.86 Total: -142.79 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.05 Total: -17.35 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -81.00 3.73 -77.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365767485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.493 kcal (2) G-P(sol) polarization free energy of solvation -81.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds