Wall clock time and date at job start Tue Mar 31 2020 11:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00343 * 2 1 4 4 C 1.38237 * 120.00405 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99392 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99556 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47070 * 339.99916 * 6 5 4 8 8 C 1.52992 * 109.47273 * 100.00144 * 6 5 4 9 9 C 1.53002 * 109.46996 * 293.95099 * 8 6 5 10 10 F 1.39895 * 109.47357 * 65.97898 * 9 8 6 11 11 F 1.39902 * 109.47379 * 185.98437 * 9 8 6 12 12 F 1.39898 * 109.46802 * 305.97686 * 9 8 6 13 13 N 1.46906 * 109.46829 * 220.00019 * 6 5 4 14 14 C 1.46898 * 110.99907 * 159.23291 * 13 6 5 15 15 C 1.52999 * 109.46933 * 175.15476 * 14 13 6 16 16 H 1.08991 * 109.47403 * 59.99759 * 15 14 13 17 17 O 1.42898 * 109.47161 * 299.99370 * 15 14 13 18 18 C 1.50701 * 109.46720 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00240 * 359.97438 * 18 15 14 20 20 C 1.37884 * 120.00019 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99758 * 0.02562 * 20 18 15 22 22 Si 1.86793 * 120.00289 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46946 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47361 * 119.99791 * 22 20 18 25 25 H 1.48496 * 109.47593 * 240.00265 * 22 20 18 26 26 C 1.38229 * 120.00310 * 0.27652 * 5 4 3 27 27 C 1.38229 * 120.00187 * 359.51344 * 26 5 4 28 28 H 1.09007 * 109.46956 * 89.99852 * 1 2 3 29 29 H 1.08996 * 109.47591 * 209.99913 * 1 2 3 30 30 H 1.09001 * 109.46795 * 330.00150 * 1 2 3 31 31 H 1.08003 * 120.00113 * 359.97361 * 3 2 1 32 32 H 1.07996 * 120.00198 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47282 * 53.94192 * 8 6 5 34 34 H 1.08995 * 109.47364 * 173.94701 * 8 6 5 35 35 H 1.00904 * 110.99544 * 283.18247 * 13 6 5 36 36 H 1.09010 * 109.46664 * 295.14968 * 14 13 6 37 37 H 1.08993 * 109.47415 * 55.14394 * 14 13 6 38 38 H 0.96702 * 113.99717 * 300.00543 * 17 15 14 39 39 H 0.96999 * 119.99850 * 179.97438 * 21 20 18 40 40 H 1.08010 * 119.99908 * 179.72906 * 26 5 4 41 41 H 1.08000 * 120.00570 * 180.27337 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2716 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1423 0.9654 -0.3489 8 6 6.2876 -0.2500 1.4238 9 6 5.9049 0.9313 2.3176 10 9 4.5131 0.9857 2.4480 11 9 6.4855 0.7683 3.5800 12 9 6.3662 2.1201 1.7422 13 7 6.2690 -1.0616 -0.8867 14 6 7.6538 -0.8020 -1.3025 15 6 8.1689 -1.9840 -2.1263 16 1 7.5424 -2.1122 -3.0089 17 8 8.1244 -3.1722 -1.3338 18 6 9.5893 -1.7174 -2.5534 19 1 10.0758 -0.7969 -2.2664 20 6 10.2678 -2.6487 -3.3106 21 7 9.6753 -3.7694 -3.6605 22 14 12.0282 -2.3180 -3.8407 23 1 12.4611 -0.9955 -3.3222 24 1 12.9161 -3.3770 -3.2972 25 1 12.1072 -2.3188 -5.3236 26 6 3.5805 -1.1972 -0.0036 27 6 2.1982 -1.1972 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6583 2.1325 -0.0004 32 1 4.1206 2.1324 0.0001 33 1 5.8381 -1.1626 1.8155 34 1 7.3722 -0.3571 1.4077 35 1 6.1866 -1.9669 -0.4488 36 1 7.6877 0.1045 -1.9071 37 1 8.2802 -0.6737 -0.4199 38 1 8.6604 -3.1293 -0.5301 39 1 10.1525 -4.4244 -4.1935 40 1 4.1205 -2.1326 -0.0072 41 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434465411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:50 Heat of formation + Delta-G solvation = -190.669266 kcal Electronic energy + Delta-G solvation = -27238.494555 eV Core-core repulsion = 22895.616960 eV Total energy + Delta-G solvation = -4342.877595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.11716 -47.63020 -47.55418 -39.61701 -37.30401 -35.45249 -32.53628 -32.15969 -31.21398 -30.82476 -28.33513 -27.05735 -24.75338 -23.65897 -22.82106 -22.08982 -20.63542 -20.28963 -18.53885 -18.42480 -17.48501 -16.98862 -16.50980 -15.34710 -15.20936 -14.87036 -14.62214 -14.55784 -14.44407 -14.35906 -14.06626 -14.01832 -13.75619 -13.74115 -13.65214 -13.57394 -13.30461 -12.96859 -12.89258 -12.46949 -12.26696 -11.98290 -11.77475 -11.55992 -11.21551 -11.12422 -10.94434 -10.90986 -10.80363 -10.73076 -10.14245 -9.11622 -8.78667 -8.63431 -8.45074 -8.26626 -8.04448 -6.05895 -4.24536 1.39482 1.53450 2.75512 3.23836 3.32513 3.35340 3.73425 3.77951 4.01913 4.04617 4.32193 4.52859 4.79935 4.84286 4.90376 4.95165 5.07846 5.12131 5.21510 5.30517 5.37729 5.49797 5.57995 5.60612 5.73510 5.80906 6.03423 6.09793 6.12972 6.17677 6.29578 6.49973 6.65930 6.69131 6.78400 7.09604 7.30772 7.65546 7.72298 7.86661 8.13825 8.78606 9.28754 9.52183 10.98352 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.003600 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.364275 B = 7775.270437 C = 8994.423342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.077 4.077 6 C 0.127 3.873 7 H 0.096 0.904 8 C -0.198 4.198 9 C 0.454 3.546 10 F -0.176 7.176 11 F -0.190 7.190 12 F -0.184 7.184 13 N -0.666 5.666 14 C 0.031 3.969 15 C 0.230 3.770 16 H 0.066 0.934 17 O -0.565 6.565 18 C -0.574 4.574 19 H 0.056 0.944 20 C 0.080 3.920 21 N -0.857 5.857 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.088 4.088 27 C -0.123 4.123 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.348 0.652 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.341 0.659 39 H 0.260 0.740 40 H 0.124 0.876 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.966 8.397 11.634 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.118 4.118 5 C -0.077 4.077 6 C 0.015 3.985 7 H 0.114 0.886 8 C -0.239 4.239 9 C 0.399 3.601 10 F -0.157 7.157 11 F -0.171 7.171 12 F -0.166 7.166 13 N -0.297 5.297 14 C -0.097 4.097 15 C 0.173 3.827 16 H 0.083 0.917 17 O -0.367 6.367 18 C -0.612 4.612 19 H 0.074 0.926 20 C -0.127 4.127 21 N -0.492 5.492 22 Si 0.717 3.283 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.107 4.107 27 C -0.141 4.141 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.168 0.832 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.184 0.816 39 H 0.070 0.930 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.633 8.315 10.463 19.818 hybrid contribution 1.938 0.403 1.039 2.236 sum -12.695 8.718 11.502 19.221 Atomic orbital electron populations 1.20765 0.91605 1.02410 1.02114 1.19864 0.95767 0.93331 1.00167 1.20870 0.93936 0.97298 1.01915 1.20929 0.94251 0.97236 0.99392 1.19684 0.94201 0.93525 1.00329 1.20505 0.91481 0.98731 0.87746 0.88634 1.23843 1.06041 0.96450 0.97534 1.20546 0.74978 0.84965 0.79566 1.93234 1.29758 1.96728 1.95976 1.93177 1.84481 1.95593 1.43879 1.93166 1.88731 1.50382 1.84315 1.60703 1.23765 1.04153 1.41080 1.22992 0.85416 1.02648 0.98682 1.19446 0.94953 0.79237 0.89080 0.91662 1.86603 1.70805 1.41687 1.37615 1.21632 0.98984 1.04782 1.35823 0.92574 1.25032 0.98013 0.94825 0.94786 1.70087 1.36565 1.07543 1.35038 0.86608 0.84879 0.78340 0.78500 1.19714 1.20902 1.20822 1.20905 0.93827 0.97779 0.98147 1.20978 0.94192 0.97327 1.01603 0.91363 0.91757 0.91860 0.86488 0.86548 0.87127 0.86876 0.83200 0.91219 0.96040 0.81595 0.92989 0.85853 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.58 16 2 C -0.09 -1.03 5.88 -104.62 -0.62 -1.65 16 3 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 4 C -0.10 -1.25 7.75 -39.58 -0.31 -1.56 16 5 C -0.08 -1.02 3.77 -104.62 -0.39 -1.41 16 6 C 0.13 1.70 2.16 -68.86 -0.15 1.55 16 7 H 0.10 1.33 7.12 -51.93 -0.37 0.96 16 8 C -0.20 -2.30 4.83 -26.73 -0.13 -2.43 16 9 C 0.45 5.48 3.10 37.16 0.12 5.60 16 10 F -0.18 -2.22 14.02 2.25 0.03 -2.19 16 11 F -0.19 -2.37 17.32 2.25 0.04 -2.33 16 12 F -0.18 -2.34 16.46 2.25 0.04 -2.31 16 13 N -0.67 -10.71 5.81 -107.95 -0.63 -11.34 16 14 C 0.03 0.59 5.15 -3.83 -0.02 0.57 16 15 C 0.23 5.51 3.09 -27.88 -0.09 5.43 16 16 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 17 O -0.57 -13.40 11.99 -35.23 -0.42 -13.82 16 18 C -0.57 -15.18 8.76 -34.44 -0.30 -15.48 16 19 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 20 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 21 N -0.86 -24.80 12.84 55.43 0.71 -24.09 16 22 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.09 -1.15 9.32 -39.59 -0.37 -1.51 16 27 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 28 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.36 8.04 -52.49 -0.42 0.94 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.11 1.30 7.00 -51.93 -0.36 0.93 16 35 H 0.35 5.50 6.94 -39.29 -0.27 5.22 16 36 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.02 0.38 6.97 -51.93 -0.36 0.02 16 38 H 0.34 7.08 9.04 45.56 0.41 7.49 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.12 1.55 7.10 -52.48 -0.37 1.18 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -29.61 351.03 -7.39 -37.00 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -4.67 Total: 11.12 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -2.76 Total: -13.05 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.08 Total: -35.43 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.42 Total: -13.82 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.61 -7.39 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434465411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.672 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds