Wall clock time and date at job start Tue Mar 31 2020 11:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00343 * 2 1 4 4 C 1.38237 * 120.00405 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99392 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99556 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47070 * 339.99916 * 6 5 4 8 8 C 1.52992 * 109.47273 * 100.00144 * 6 5 4 9 9 C 1.53002 * 109.46996 * 293.95099 * 8 6 5 10 10 F 1.39895 * 109.47357 * 65.97898 * 9 8 6 11 11 F 1.39902 * 109.47379 * 185.98437 * 9 8 6 12 12 F 1.39898 * 109.46802 * 305.97686 * 9 8 6 13 13 N 1.46906 * 109.46829 * 220.00019 * 6 5 4 14 14 C 1.46898 * 110.99907 * 159.23291 * 13 6 5 15 15 C 1.52999 * 109.46933 * 175.15476 * 14 13 6 16 16 H 1.08991 * 109.47403 * 59.99759 * 15 14 13 17 17 O 1.42898 * 109.47161 * 299.99370 * 15 14 13 18 18 C 1.50701 * 109.46720 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00240 * 359.97438 * 18 15 14 20 20 C 1.37884 * 120.00019 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99758 * 0.02562 * 20 18 15 22 22 Si 1.86793 * 120.00289 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46946 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47361 * 119.99791 * 22 20 18 25 25 H 1.48496 * 109.47593 * 240.00265 * 22 20 18 26 26 C 1.38229 * 120.00310 * 0.27652 * 5 4 3 27 27 C 1.38229 * 120.00187 * 359.51344 * 26 5 4 28 28 H 1.09007 * 109.46956 * 89.99852 * 1 2 3 29 29 H 1.08996 * 109.47591 * 209.99913 * 1 2 3 30 30 H 1.09001 * 109.46795 * 330.00150 * 1 2 3 31 31 H 1.08003 * 120.00113 * 359.97361 * 3 2 1 32 32 H 1.07996 * 120.00198 * 179.97438 * 4 3 2 33 33 H 1.09006 * 109.47282 * 53.94192 * 8 6 5 34 34 H 1.08995 * 109.47364 * 173.94701 * 8 6 5 35 35 H 1.00904 * 110.99544 * 283.18247 * 13 6 5 36 36 H 1.09010 * 109.46664 * 295.14968 * 14 13 6 37 37 H 1.08993 * 109.47415 * 55.14394 * 14 13 6 38 38 H 0.96702 * 113.99717 * 300.00543 * 17 15 14 39 39 H 0.96999 * 119.99850 * 179.97438 * 21 20 18 40 40 H 1.08010 * 119.99908 * 179.72906 * 26 5 4 41 41 H 1.08000 * 120.00570 * 180.27337 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2716 -0.0001 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1423 0.9654 -0.3489 8 6 6.2876 -0.2500 1.4238 9 6 5.9049 0.9313 2.3176 10 9 4.5131 0.9857 2.4480 11 9 6.4855 0.7683 3.5800 12 9 6.3662 2.1201 1.7422 13 7 6.2690 -1.0616 -0.8867 14 6 7.6538 -0.8020 -1.3025 15 6 8.1689 -1.9840 -2.1263 16 1 7.5424 -2.1122 -3.0089 17 8 8.1244 -3.1722 -1.3338 18 6 9.5893 -1.7174 -2.5534 19 1 10.0758 -0.7969 -2.2664 20 6 10.2678 -2.6487 -3.3106 21 7 9.6753 -3.7694 -3.6605 22 14 12.0282 -2.3180 -3.8407 23 1 12.4611 -0.9955 -3.3222 24 1 12.9161 -3.3770 -3.2972 25 1 12.1072 -2.3188 -5.3236 26 6 3.5805 -1.1972 -0.0036 27 6 2.1982 -1.1972 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6583 2.1325 -0.0004 32 1 4.1206 2.1324 0.0001 33 1 5.8381 -1.1626 1.8155 34 1 7.3722 -0.3571 1.4077 35 1 6.1866 -1.9669 -0.4488 36 1 7.6877 0.1045 -1.9071 37 1 8.2802 -0.6737 -0.4199 38 1 8.6604 -3.1293 -0.5301 39 1 10.1525 -4.4244 -4.1935 40 1 4.1205 -2.1326 -0.0072 41 1 1.6581 -2.1325 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434465411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:50 Heat of formation + Delta-G solvation = -209.218097 kcal Electronic energy + Delta-G solvation = -27239.298893 eV Core-core repulsion = 22895.616960 eV Total energy + Delta-G solvation = -4343.681932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.10103 -48.61731 -48.53933 -40.58723 -38.68011 -37.00202 -34.25764 -33.61089 -32.29019 -31.75178 -29.87962 -28.20001 -26.23484 -24.89345 -23.77296 -23.16496 -22.30144 -21.27079 -19.52182 -19.44048 -19.00891 -18.41331 -17.65519 -16.67019 -16.33319 -16.31647 -16.09235 -15.95226 -15.59512 -15.51183 -15.23158 -15.03998 -14.82752 -14.77400 -14.70112 -14.50667 -14.34941 -14.21672 -14.17351 -13.78652 -13.18258 -13.08641 -13.00151 -12.86617 -12.74437 -12.62823 -12.56217 -12.39711 -12.04408 -11.81971 -11.71628 -11.03160 -10.70809 -10.16891 -9.71987 -9.44955 -9.26405 -8.12988 -6.38167 0.46777 0.60196 1.40350 1.42699 1.53763 1.77816 2.39113 2.75370 2.82721 3.04625 3.08037 3.13568 3.36181 3.72384 3.90554 3.94958 4.12654 4.16716 4.22701 4.29769 4.33835 4.48218 4.55429 4.60507 4.69062 4.71926 4.88537 4.93589 5.01548 5.12608 5.25696 5.33536 5.55541 5.64840 5.67207 5.77539 5.77878 6.01569 6.13920 6.21384 6.46297 6.75712 7.35108 7.56764 8.91567 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.003600 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.364275 B = 7775.270437 C = 8994.423342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.111 4.111 5 C -0.090 4.090 6 C 0.133 3.867 7 H 0.091 0.909 8 C -0.192 4.192 9 C 0.459 3.541 10 F -0.178 7.178 11 F -0.191 7.191 12 F -0.188 7.188 13 N -0.672 5.672 14 C 0.051 3.949 15 C 0.233 3.767 16 H 0.022 0.978 17 O -0.576 6.576 18 C -0.585 4.585 19 H 0.060 0.940 20 C 0.027 3.973 21 N -0.898 5.898 22 Si 0.958 3.042 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.282 1.282 26 C -0.103 4.103 27 C -0.133 4.133 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.349 0.651 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.355 0.645 39 H 0.260 0.740 40 H 0.121 0.879 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.338 9.305 12.562 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.129 4.129 5 C -0.090 4.090 6 C 0.022 3.978 7 H 0.109 0.891 8 C -0.232 4.232 9 C 0.404 3.596 10 F -0.159 7.159 11 F -0.172 7.172 12 F -0.170 7.170 13 N -0.303 5.303 14 C -0.078 4.078 15 C 0.175 3.825 16 H 0.040 0.960 17 O -0.380 6.380 18 C -0.623 4.623 19 H 0.079 0.921 20 C -0.176 4.176 21 N -0.535 5.535 22 Si 0.783 3.217 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.208 1.208 26 C -0.121 4.121 27 C -0.150 4.150 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.170 0.830 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.200 0.800 39 H 0.069 0.931 40 H 0.139 0.861 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.008 9.242 11.412 20.997 hybrid contribution 1.956 0.132 0.775 2.108 sum -13.053 9.374 12.187 20.168 Atomic orbital electron populations 1.20813 0.89479 1.03550 1.02884 1.20241 0.97427 0.92928 0.98924 1.21175 0.93723 0.98437 1.01333 1.21082 0.94967 0.97182 0.99679 1.19679 0.93855 0.94014 1.01501 1.20407 0.91863 0.97324 0.88198 0.89129 1.23754 1.06269 0.96830 0.96315 1.20502 0.74790 0.84814 0.79477 1.93230 1.29992 1.96729 1.95984 1.93175 1.84496 1.95587 1.43969 1.93160 1.88764 1.50683 1.84369 1.60584 1.22000 1.05056 1.42634 1.22549 0.87099 0.99752 0.98366 1.19199 0.93415 0.81010 0.88864 0.96003 1.86534 1.71191 1.41918 1.38315 1.22053 1.00180 1.04697 1.35406 0.92139 1.25869 1.02187 0.94625 0.94925 1.70220 1.38357 1.08676 1.36256 0.85540 0.79839 0.78483 0.77874 1.18720 1.20538 1.20771 1.21009 0.94574 0.97649 0.98887 1.21244 0.93954 0.98473 1.01369 0.90649 0.90779 0.90641 0.84507 0.86111 0.85872 0.86445 0.83008 0.91792 0.94528 0.80038 0.93056 0.86097 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.24 0.71 -0.88 16 2 C -0.10 -1.98 5.88 -19.87 -0.12 -2.09 16 3 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 4 C -0.11 -2.67 7.75 22.27 0.17 -2.50 16 5 C -0.09 -2.32 3.77 -19.86 -0.07 -2.39 16 6 C 0.13 3.46 2.16 44.17 0.10 3.56 16 7 H 0.09 2.45 7.12 -2.39 -0.02 2.43 16 8 C -0.19 -4.20 4.83 30.59 0.15 -4.05 16 9 C 0.46 10.45 3.10 71.98 0.22 10.68 16 10 F -0.18 -4.26 14.02 44.97 0.63 -3.63 16 11 F -0.19 -4.47 17.32 44.97 0.78 -3.69 16 12 F -0.19 -4.56 16.46 44.97 0.74 -3.82 16 13 N -0.67 -21.43 5.81 -495.44 -2.88 -24.30 16 14 C 0.05 1.92 5.15 86.30 0.44 2.36 16 15 C 0.23 11.31 3.09 29.85 0.09 11.40 16 16 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 17 O -0.58 -27.52 11.99 -148.98 -1.79 -29.31 16 18 C -0.59 -30.98 8.76 25.60 0.22 -30.75 16 19 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 20 C 0.03 1.45 5.40 84.66 0.46 1.91 16 21 N -0.90 -52.76 12.84 21.45 0.28 -52.48 16 22 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 C -0.10 -2.61 9.32 22.27 0.21 -2.40 16 27 C -0.13 -2.99 9.70 22.27 0.22 -2.77 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 30 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 31 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.12 2.71 8.04 -2.91 -0.02 2.69 16 33 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.12 2.49 7.00 -2.39 -0.02 2.47 16 35 H 0.35 10.96 6.94 -89.69 -0.62 10.34 16 36 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 37 H 0.04 1.25 6.97 -2.39 -0.02 1.23 16 38 H 0.35 14.61 9.04 -74.06 -0.67 13.94 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.12 3.02 7.10 -2.91 -0.02 3.00 16 41 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -62.94 351.03 2.58 -60.36 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.22 Total: 32.83 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.02 Total: -20.49 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -2.60 Total: -76.79 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -1.79 Total: -29.31 kcal Atomic # 9 Polarization: -13.29 SS G_CDS: 2.15 Total: -11.14 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -62.94 2.58 -60.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434465411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.862 kcal (2) G-P(sol) polarization free energy of solvation -62.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds