Wall clock time and date at job start Tue Mar 31 2020 11:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 120.00313 * 2 1 4 4 C 1.38229 * 120.00137 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00399 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00342 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47479 * 20.00812 * 6 5 4 8 8 C 1.52997 * 109.47319 * 260.00308 * 6 5 4 9 9 C 1.52998 * 109.46922 * 66.06864 * 8 6 5 10 10 F 1.39899 * 109.47472 * 54.01541 * 9 8 6 11 11 F 1.39902 * 109.47089 * 174.01796 * 9 8 6 12 12 F 1.39905 * 109.47076 * 294.01419 * 9 8 6 13 13 N 1.46904 * 109.47053 * 140.00559 * 6 5 4 14 14 C 1.46905 * 110.99788 * 209.25982 * 13 6 5 15 15 C 1.53002 * 109.46724 * 175.12291 * 14 13 6 16 16 H 1.08999 * 109.47256 * 59.99896 * 15 14 13 17 17 O 1.42900 * 109.47258 * 299.99657 * 15 14 13 18 18 C 1.50704 * 109.46798 * 179.97438 * 15 14 13 19 19 H 1.08000 * 120.00167 * 0.02562 * 18 15 14 20 20 C 1.37882 * 119.99859 * 179.97438 * 18 15 14 21 21 N 1.31517 * 119.99854 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99828 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.46929 * 90.00693 * 22 20 18 24 24 H 1.48502 * 109.46679 * 210.00583 * 22 20 18 25 25 H 1.48502 * 109.47268 * 330.00186 * 22 20 18 26 26 C 1.38240 * 119.99616 * 0.26185 * 5 4 3 27 27 C 1.38234 * 119.99916 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47270 * 89.99816 * 1 2 3 29 29 H 1.08999 * 109.46936 * 210.00204 * 1 2 3 30 30 H 1.09004 * 109.46290 * 329.99489 * 1 2 3 31 31 H 1.08006 * 119.99783 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.99771 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.47421 * 186.06188 * 8 6 5 34 34 H 1.08994 * 109.47604 * 306.06586 * 8 6 5 35 35 H 1.00900 * 110.99983 * 333.21275 * 13 6 5 36 36 H 1.08999 * 109.47339 * 55.12238 * 14 13 6 37 37 H 1.09002 * 109.46871 * 295.12157 * 14 13 6 38 38 H 0.96693 * 114.00109 * 299.99940 * 17 15 14 39 39 H 0.97001 * 119.99616 * 179.97438 * 21 20 18 40 40 H 1.08001 * 119.99838 * 179.72457 * 26 5 4 41 41 H 1.08007 * 120.00047 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 1 6.1424 0.9657 0.3492 8 6 6.2876 -0.2511 -1.4225 9 6 5.9053 0.9296 -2.3172 10 9 6.3668 2.1188 -1.7427 11 9 6.4860 0.7655 -3.5794 12 9 4.5134 0.9842 -2.4478 13 7 6.2690 -1.0608 0.8886 14 6 7.5730 -0.7044 1.4636 15 6 7.9934 -1.7726 2.4751 16 1 8.0687 -2.7377 1.9742 17 8 7.0188 -1.8516 3.5172 18 6 9.3314 -1.4074 3.0646 19 1 9.8317 -0.5035 2.7496 20 6 9.9164 -2.2266 4.0068 21 7 9.3070 -3.3270 4.3907 22 14 11.5746 -1.7735 4.7380 23 1 11.3700 -0.9414 5.9508 24 1 12.3086 -3.0112 5.1048 25 1 12.3633 -1.0078 3.7395 26 6 3.5805 -1.1972 -0.0055 27 6 2.1982 -1.1971 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5140 31 1 1.6583 2.1325 -0.0004 32 1 4.1206 2.1324 -0.0010 33 1 7.3723 -0.3584 -1.4064 34 1 5.8381 -1.1638 -1.8136 35 1 5.5973 -1.2635 1.6137 36 1 7.4977 0.2607 1.9646 37 1 8.3164 -0.6441 0.6687 38 1 6.8989 -1.0265 4.0069 39 1 9.7187 -3.9035 5.0533 40 1 4.1206 -2.1325 -0.0100 41 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434465412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:52 Heat of formation + Delta-G solvation = -209.257393 kcal Electronic energy + Delta-G solvation = -27208.663543 eV Core-core repulsion = 22864.979906 eV Total energy + Delta-G solvation = -4343.683636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.08633 -48.60278 -48.52571 -40.63909 -38.58739 -36.96172 -34.26094 -33.60195 -32.39558 -31.79477 -29.94694 -28.15764 -26.20915 -24.99922 -23.74773 -23.09339 -22.22425 -21.26229 -19.50489 -19.41561 -18.95601 -18.49089 -17.56264 -16.66882 -16.34733 -16.30962 -16.13110 -15.94967 -15.56065 -15.54694 -15.17944 -15.04386 -14.86217 -14.74389 -14.69183 -14.56839 -14.39806 -14.22319 -14.17713 -13.66946 -13.23091 -13.05679 -12.99677 -12.87248 -12.80316 -12.72334 -12.49302 -12.35585 -12.04801 -11.81399 -11.70788 -11.02314 -10.70744 -10.17546 -9.76622 -9.45109 -9.36442 -8.12861 -6.38238 0.39710 0.55197 1.41336 1.42446 1.52755 1.79085 2.39175 2.74382 2.81042 3.05891 3.11948 3.13657 3.42392 3.66917 3.93690 4.04995 4.11046 4.15504 4.20046 4.29396 4.47039 4.51322 4.56268 4.58166 4.64828 4.79420 4.87238 4.92018 4.98861 5.11193 5.22031 5.30817 5.51110 5.62658 5.63861 5.74270 5.75192 6.00526 6.13386 6.16945 6.43832 6.75082 7.34342 7.54600 8.91533 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.003672 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.204844 B = 7622.500564 C = 9045.980892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.129 4.129 4 C -0.107 4.107 5 C -0.113 4.113 6 C 0.132 3.868 7 H 0.060 0.940 8 C -0.149 4.149 9 C 0.456 3.544 10 F -0.189 7.189 11 F -0.189 7.189 12 F -0.179 7.179 13 N -0.673 5.673 14 C 0.052 3.948 15 C 0.232 3.768 16 H 0.028 0.972 17 O -0.577 6.577 18 C -0.587 4.587 19 H 0.060 0.940 20 C 0.027 3.973 21 N -0.898 5.898 22 Si 0.958 3.042 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.102 4.102 27 C -0.131 4.131 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.351 0.649 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.353 0.647 39 H 0.261 0.739 40 H 0.126 0.874 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.765 9.327 -12.315 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.125 4.125 5 C -0.113 4.113 6 C 0.022 3.978 7 H 0.078 0.922 8 C -0.188 4.188 9 C 0.402 3.598 10 F -0.171 7.171 11 F -0.170 7.170 12 F -0.160 7.160 13 N -0.306 5.306 14 C -0.077 4.077 15 C 0.175 3.825 16 H 0.045 0.955 17 O -0.381 6.381 18 C -0.625 4.625 19 H 0.078 0.922 20 C -0.176 4.176 21 N -0.535 5.535 22 Si 0.782 3.218 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.120 4.120 27 C -0.149 4.149 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.172 0.828 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.198 0.802 39 H 0.070 0.930 40 H 0.144 0.856 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.538 8.194 -12.953 21.125 hybrid contribution 0.980 1.356 1.123 2.015 sum -13.558 9.549 -11.831 20.371 Atomic orbital electron populations 1.20832 0.89374 1.03591 1.03046 1.20277 0.97503 0.92889 0.98308 1.21193 0.93650 0.98533 1.01267 1.21105 0.95031 0.97107 0.99287 1.19843 0.93959 0.94255 1.03279 1.20248 0.90807 0.94592 0.92192 0.92249 1.22872 1.05881 0.95793 0.94221 1.20588 0.74725 0.84809 0.79682 1.93156 1.88768 1.50762 1.84418 1.93172 1.84490 1.95574 1.43814 1.93225 1.30077 1.96734 1.96010 1.60425 1.05284 1.40650 1.24257 1.22587 0.90582 0.97184 0.97395 1.19236 0.85802 0.93515 0.83971 0.95458 1.86526 1.61924 1.38669 1.50976 1.22027 1.06242 1.08978 1.25260 0.92217 1.25867 1.00713 0.94351 0.96622 1.70215 1.39372 1.13225 1.30665 0.85592 0.79630 0.77700 0.78840 1.19940 1.21027 1.18918 1.21110 0.94592 0.97779 0.98541 1.21277 0.93883 0.98557 1.01164 0.90305 0.90818 0.90664 0.84396 0.86171 0.86686 0.86079 0.82801 0.95565 0.91164 0.80233 0.93032 0.85571 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.09 -1.79 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16 4 C -0.11 -2.51 7.75 22.27 0.17 -2.34 16 5 C -0.11 -2.86 3.53 -19.87 -0.07 -2.93 16 6 C 0.13 3.52 2.21 44.16 0.10 3.62 16 7 H 0.06 1.64 6.85 -2.39 -0.02 1.62 16 8 C -0.15 -3.54 5.10 30.59 0.16 -3.39 16 9 C 0.46 10.79 3.10 71.98 0.22 11.01 16 10 F -0.19 -4.72 16.46 44.97 0.74 -3.98 16 11 F -0.19 -4.56 17.32 44.97 0.78 -3.78 16 12 F -0.18 -4.38 14.02 44.97 0.63 -3.75 16 13 N -0.67 -21.81 5.79 -495.44 -2.87 -24.69 16 14 C 0.05 1.97 5.21 86.30 0.45 2.42 16 15 C 0.23 11.41 3.09 29.85 0.09 11.50 16 16 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 17 O -0.58 -28.59 11.99 -148.98 -1.79 -30.38 16 18 C -0.59 -31.34 8.76 25.60 0.22 -31.12 16 19 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 20 C 0.03 1.49 5.40 84.66 0.46 1.95 16 21 N -0.90 -52.96 12.84 21.45 0.28 -52.68 16 22 Si 0.96 42.69 29.54 68.60 2.03 44.71 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 26 C -0.10 -2.53 8.90 22.27 0.20 -2.34 16 27 C -0.13 -2.85 9.70 22.27 0.22 -2.63 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 31 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 32 H 0.12 2.66 8.04 -2.91 -0.02 2.64 16 33 H 0.11 2.71 7.75 -2.38 -0.02 2.70 16 34 H 0.12 2.72 8.12 -2.39 -0.02 2.70 16 35 H 0.35 12.03 7.09 -89.69 -0.64 11.39 16 36 H 0.03 0.98 7.93 -2.39 -0.02 0.96 16 37 H 0.07 2.61 7.76 -2.39 -0.02 2.60 16 38 H 0.35 15.49 9.04 -74.06 -0.67 14.82 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.13 3.24 7.72 -2.91 -0.02 3.22 16 41 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -61.89 352.56 2.58 -59.31 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.24 Total: 34.63 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.03 Total: -19.40 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.60 Total: -77.37 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.79 Total: -30.38 kcal Atomic # 9 Polarization: -13.66 SS G_CDS: 2.15 Total: -11.51 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -61.89 2.58 -59.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434465412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.948 kcal (2) G-P(sol) polarization free energy of solvation -61.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds