Wall clock time and date at job start Tue Mar 31 2020 12:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.48968 * 2 1 4 4 C 1.54570 * 110.43744 * 237.51374 * 2 1 3 5 5 C 1.54499 * 102.14641 * 268.10887 * 4 2 1 6 6 H 1.08995 * 110.46187 * 103.53743 * 5 4 2 7 7 N 1.46498 * 110.36960 * 225.81981 * 5 4 2 8 8 C 1.34771 * 120.00349 * 201.85118 * 7 5 4 9 9 O 1.21286 * 119.99728 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00384 * 179.97438 * 8 7 5 11 11 H 1.09007 * 109.46737 * 300.00103 * 10 8 7 12 12 C 1.50699 * 109.47180 * 60.00245 * 10 8 7 13 13 H 1.08003 * 120.00040 * 35.05118 * 12 10 8 14 14 C 1.37870 * 120.00040 * 215.05689 * 12 10 8 15 15 N 1.31514 * 120.00091 * 5.11149 * 14 12 10 16 16 Si 1.86799 * 120.00068 * 185.10535 * 14 12 10 17 17 H 1.48505 * 109.47140 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47120 * 119.99862 * 16 14 12 19 19 H 1.48495 * 109.47610 * 240.00288 * 16 14 12 20 20 C 1.50701 * 109.47284 * 180.02562 * 10 8 7 21 21 C 1.38235 * 119.99863 * 113.75093 * 20 10 8 22 22 C 1.38240 * 119.99488 * 180.02562 * 21 20 10 23 23 C 1.38236 * 120.00253 * 359.96161 * 22 21 20 24 24 C 1.38235 * 119.99853 * 0.27296 * 23 22 21 25 25 C 1.38233 * 119.99840 * 359.53553 * 24 23 22 26 26 C 1.51328 * 104.82092 * 344.65426 * 5 4 2 27 27 O 1.20828 * 125.09382 * 177.68155 * 26 5 4 28 28 O 1.34064 * 109.81532 * 357.68870 * 26 5 4 29 29 H 1.09001 * 109.47086 * 298.96440 * 1 2 3 30 30 H 1.08994 * 109.47268 * 58.96166 * 1 2 3 31 31 H 1.09000 * 109.47149 * 178.96708 * 1 2 3 32 32 H 1.09004 * 109.46727 * 181.03161 * 3 2 1 33 33 H 1.08997 * 109.47422 * 301.03679 * 3 2 1 34 34 H 1.09000 * 109.46885 * 61.03622 * 3 2 1 35 35 H 1.08995 * 110.86851 * 149.94699 * 4 2 1 36 36 H 1.09001 * 110.86750 * 26.27004 * 4 2 1 37 37 H 0.97007 * 119.99616 * 21.85384 * 7 5 4 38 38 H 0.97009 * 120.00113 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.00576 * 359.97438 * 21 20 10 40 40 H 1.08001 * 119.99376 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.99894 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.00097 * 179.73011 * 24 23 22 43 43 H 1.08003 * 119.99946 * 180.20844 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0656 1.4332 0.0000 4 6 2.0698 -0.7779 -1.2218 5 6 2.2300 -2.2056 -0.6532 6 1 1.4197 -2.8469 -0.9999 7 7 3.5258 -2.7671 -1.0428 8 6 3.7067 -4.1026 -1.0501 9 8 2.7966 -4.8396 -0.7347 10 6 5.0395 -4.6803 -1.4514 11 1 5.2746 -4.3770 -2.4717 12 6 6.1084 -4.1733 -0.5178 13 1 5.8808 -4.0090 0.5251 14 6 7.3766 -3.9191 -0.9950 15 7 7.6279 -4.0222 -2.2818 16 14 8.7380 -3.4280 0.1860 17 1 8.2008 -3.3841 1.5698 18 1 9.8383 -4.4226 0.1141 19 1 9.2571 -2.0876 -0.1867 20 6 4.9784 -6.1842 -1.3763 21 6 5.0785 -6.9385 -2.5303 22 6 5.0218 -8.3180 -2.4614 23 6 4.8658 -8.9431 -1.2384 24 6 4.7609 -8.1886 -0.0849 25 6 4.8215 -6.8093 -0.1534 26 6 2.1603 -2.0342 0.8487 27 8 2.2066 -2.9343 1.6535 28 8 2.0393 -0.7341 1.1526 29 1 -0.3633 0.4977 0.8991 30 1 -0.3633 0.5298 -0.8805 31 1 -0.3633 -1.0275 -0.0185 32 1 3.1553 1.4138 -0.0185 33 1 1.6965 1.9590 -0.8805 34 1 1.7266 1.9477 0.8991 35 1 3.0314 -0.3778 -1.5429 36 1 1.3495 -0.7644 -2.0398 37 1 4.2536 -2.1776 -1.2954 38 1 8.5204 -3.8437 -2.6176 39 1 5.2001 -6.4501 -3.4859 40 1 5.0996 -8.9073 -3.3631 41 1 4.8220 -10.0209 -1.1845 42 1 4.6346 -8.6768 0.8702 43 1 4.7428 -6.2199 0.7482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001446331641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:46 Heat of formation + Delta-G solvation = -100.806163 kcal Electronic energy + Delta-G solvation = -27032.749891 eV Core-core repulsion = 23235.625794 eV Total energy + Delta-G solvation = -3797.124098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23963 -39.05810 -37.73479 -37.48146 -34.54474 -33.68143 -33.40497 -31.13185 -29.92696 -29.80282 -27.77316 -27.22150 -24.63543 -23.80721 -21.84105 -21.58827 -21.22495 -20.04678 -19.35693 -16.93597 -16.73491 -16.66512 -16.47245 -15.81860 -15.79767 -14.97843 -14.51163 -14.37076 -14.04279 -13.95648 -13.86405 -13.79285 -13.17361 -12.89663 -12.69035 -12.57141 -12.45191 -12.33294 -12.20626 -11.97419 -11.70492 -11.62557 -11.54455 -11.09385 -11.07137 -11.00701 -10.60272 -10.39411 -10.34233 -10.25861 -10.00270 -9.44359 -8.84113 -8.64826 -8.46738 -7.93840 -7.62270 -6.30774 -4.35652 2.22124 2.38333 2.41578 3.09850 3.17734 3.27469 3.32964 3.58277 3.83261 4.09085 4.18587 4.30244 4.44907 4.53517 4.72921 4.83421 5.07246 5.11137 5.23591 5.36173 5.40565 5.49725 5.58818 5.63581 5.73057 5.79095 5.81016 5.89984 5.90912 6.19124 6.27085 6.50523 6.59400 6.85177 6.87341 6.96631 6.97332 7.17510 7.37678 7.45333 7.62592 7.73232 7.74265 7.94608 8.05672 8.20914 8.69892 9.13566 9.30578 10.77735 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.004724 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.257227 B = 5926.166919 C = 7217.199308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 C -0.143 4.143 4 C -0.153 4.153 5 C 0.091 3.909 6 H 0.121 0.879 7 N -0.713 5.713 8 C 0.529 3.471 9 O -0.550 6.550 10 C 0.052 3.948 11 H 0.095 0.905 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.880 5.880 16 Si 0.896 3.104 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.281 1.281 20 C -0.014 4.014 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.147 4.147 24 C -0.134 4.134 25 C -0.083 4.083 26 C 0.467 3.533 27 O -0.431 6.431 28 O -0.343 6.343 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.411 0.589 38 H 0.267 0.733 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 8.861 -2.146 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.067 3.933 3 C -0.200 4.200 4 C -0.191 4.191 5 C -0.017 4.017 6 H 0.139 0.861 7 N -0.369 5.369 8 C 0.319 3.681 9 O -0.426 6.426 10 C 0.031 3.969 11 H 0.112 0.888 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.516 5.516 16 Si 0.723 3.277 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.015 4.015 21 C -0.138 4.138 22 C -0.151 4.151 23 C -0.166 4.166 24 C -0.152 4.152 25 C -0.101 4.101 26 C 0.303 3.697 27 O -0.311 6.311 28 O -0.261 6.261 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.328 7.997 -1.461 13.143 hybrid contribution 1.264 0.431 0.443 1.407 sum -9.064 8.428 -1.017 12.419 Atomic orbital electron populations 1.22259 0.92817 1.03479 1.03700 1.23003 0.94445 0.93130 0.82758 1.21868 1.02515 0.92281 1.03297 1.23372 1.04410 0.93323 0.98014 1.22001 0.91789 0.96045 0.91878 0.86140 1.45849 1.11950 1.08407 1.70727 1.21849 0.90898 0.80783 0.74594 1.90618 1.44616 1.59122 1.48283 1.18126 0.88707 0.88463 1.01637 0.88768 1.20747 0.94067 1.45232 0.95115 0.91862 1.24942 0.98692 0.94082 0.95197 1.69883 1.21935 1.47586 1.12220 0.86455 0.81701 0.78127 0.81430 1.19401 1.20605 1.20738 1.20019 0.92906 0.96411 0.92158 1.20984 1.01277 0.93418 0.98106 1.20896 1.02505 0.94752 0.96923 1.20809 1.04151 0.98486 0.93122 1.20971 1.02344 0.94377 0.97493 1.20874 0.97727 0.93519 0.97993 1.23699 0.72683 0.81334 0.91994 1.90739 1.42564 1.40653 1.57102 1.87088 1.77309 1.21290 1.40406 0.90961 0.90020 0.91701 0.90966 0.90050 0.91175 0.88125 0.87781 0.75175 0.92344 0.86969 0.87526 0.87675 0.87527 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 8.78 37.16 0.33 -0.97 16 2 C 0.10 1.03 1.24 -89.79 -0.11 0.92 16 3 C -0.14 -1.07 8.91 37.16 0.33 -0.74 16 4 C -0.15 -1.51 5.97 -25.12 -0.15 -1.66 16 5 C 0.09 1.39 3.27 -67.99 -0.22 1.17 16 6 H 0.12 1.87 7.65 -51.93 -0.40 1.48 16 7 N -0.71 -12.99 5.05 -53.86 -0.27 -13.26 16 8 C 0.53 11.85 7.03 -10.99 -0.08 11.78 16 9 O -0.55 -13.64 15.13 5.55 0.08 -13.56 16 10 C 0.05 1.23 2.45 -94.08 -0.23 1.00 16 11 H 0.09 2.32 6.99 -51.92 -0.36 1.96 16 12 C -0.51 -13.06 7.46 -34.44 -0.26 -13.31 16 13 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 14 C 0.08 1.92 5.45 -17.82 -0.10 1.82 16 15 N -0.88 -22.91 12.77 55.43 0.71 -22.20 16 16 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 20 C -0.01 -0.33 4.30 -104.62 -0.45 -0.78 16 21 C -0.12 -2.62 9.67 -39.58 -0.38 -3.00 16 22 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 23 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 24 C -0.13 -2.74 10.05 -39.58 -0.40 -3.13 16 25 C -0.08 -1.94 8.32 -39.58 -0.33 -2.27 16 26 C 0.47 8.42 8.03 36.31 0.29 8.72 16 27 O -0.43 -9.81 18.00 -18.41 -0.33 -10.15 16 28 O -0.34 -5.18 10.48 -38.47 -0.40 -5.58 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.91 7.45 -51.93 -0.39 0.52 16 36 H 0.10 0.75 7.92 -51.93 -0.41 0.34 16 37 H 0.41 6.95 8.20 -40.82 -0.33 6.62 16 38 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 39 H 0.11 2.33 7.96 -52.49 -0.42 1.92 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.11 2.73 7.89 -52.48 -0.41 2.32 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.65 366.42 -8.34 -40.98 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.07 Total: 9.64 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.55 Total: -6.64 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.44 Total: -35.46 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.65 Total: -29.28 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.65 -8.34 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446331641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.823 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds