Wall clock time and date at job start Tue Mar 31 2020 12:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.48968 * 2 1 4 4 C 1.54570 * 110.43744 * 237.51374 * 2 1 3 5 5 C 1.54499 * 102.14641 * 268.10887 * 4 2 1 6 6 H 1.08995 * 110.46187 * 103.53743 * 5 4 2 7 7 N 1.46498 * 110.36960 * 225.81981 * 5 4 2 8 8 C 1.34771 * 120.00349 * 201.85118 * 7 5 4 9 9 O 1.21286 * 119.99728 * 0.02562 * 8 7 5 10 10 C 1.50701 * 120.00384 * 179.97438 * 8 7 5 11 11 H 1.09007 * 109.46737 * 300.00103 * 10 8 7 12 12 C 1.50699 * 109.47180 * 60.00245 * 10 8 7 13 13 H 1.08003 * 120.00040 * 35.05118 * 12 10 8 14 14 C 1.37870 * 120.00040 * 215.05689 * 12 10 8 15 15 N 1.31514 * 120.00091 * 5.11149 * 14 12 10 16 16 Si 1.86799 * 120.00068 * 185.10535 * 14 12 10 17 17 H 1.48505 * 109.47140 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47120 * 119.99862 * 16 14 12 19 19 H 1.48495 * 109.47610 * 240.00288 * 16 14 12 20 20 C 1.50701 * 109.47284 * 180.02562 * 10 8 7 21 21 C 1.38235 * 119.99863 * 113.75093 * 20 10 8 22 22 C 1.38240 * 119.99488 * 180.02562 * 21 20 10 23 23 C 1.38236 * 120.00253 * 359.96161 * 22 21 20 24 24 C 1.38235 * 119.99853 * 0.27296 * 23 22 21 25 25 C 1.38233 * 119.99840 * 359.53553 * 24 23 22 26 26 C 1.51328 * 104.82092 * 344.65426 * 5 4 2 27 27 O 1.20828 * 125.09382 * 177.68155 * 26 5 4 28 28 O 1.34064 * 109.81532 * 357.68870 * 26 5 4 29 29 H 1.09001 * 109.47086 * 298.96440 * 1 2 3 30 30 H 1.08994 * 109.47268 * 58.96166 * 1 2 3 31 31 H 1.09000 * 109.47149 * 178.96708 * 1 2 3 32 32 H 1.09004 * 109.46727 * 181.03161 * 3 2 1 33 33 H 1.08997 * 109.47422 * 301.03679 * 3 2 1 34 34 H 1.09000 * 109.46885 * 61.03622 * 3 2 1 35 35 H 1.08995 * 110.86851 * 149.94699 * 4 2 1 36 36 H 1.09001 * 110.86750 * 26.27004 * 4 2 1 37 37 H 0.97007 * 119.99616 * 21.85384 * 7 5 4 38 38 H 0.97009 * 120.00113 * 180.02562 * 15 14 12 39 39 H 1.07998 * 120.00576 * 359.97438 * 21 20 10 40 40 H 1.08001 * 119.99376 * 179.97438 * 22 21 20 41 41 H 1.07998 * 119.99894 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.00097 * 179.73011 * 24 23 22 43 43 H 1.08003 * 119.99946 * 180.20844 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0656 1.4332 0.0000 4 6 2.0698 -0.7779 -1.2218 5 6 2.2300 -2.2056 -0.6532 6 1 1.4197 -2.8469 -0.9999 7 7 3.5258 -2.7671 -1.0428 8 6 3.7067 -4.1026 -1.0501 9 8 2.7966 -4.8396 -0.7347 10 6 5.0395 -4.6803 -1.4514 11 1 5.2746 -4.3770 -2.4717 12 6 6.1084 -4.1733 -0.5178 13 1 5.8808 -4.0090 0.5251 14 6 7.3766 -3.9191 -0.9950 15 7 7.6279 -4.0222 -2.2818 16 14 8.7380 -3.4280 0.1860 17 1 8.2008 -3.3841 1.5698 18 1 9.8383 -4.4226 0.1141 19 1 9.2571 -2.0876 -0.1867 20 6 4.9784 -6.1842 -1.3763 21 6 5.0785 -6.9385 -2.5303 22 6 5.0218 -8.3180 -2.4614 23 6 4.8658 -8.9431 -1.2384 24 6 4.7609 -8.1886 -0.0849 25 6 4.8215 -6.8093 -0.1534 26 6 2.1603 -2.0342 0.8487 27 8 2.2066 -2.9343 1.6535 28 8 2.0393 -0.7341 1.1526 29 1 -0.3633 0.4977 0.8991 30 1 -0.3633 0.5298 -0.8805 31 1 -0.3633 -1.0275 -0.0185 32 1 3.1553 1.4138 -0.0185 33 1 1.6965 1.9590 -0.8805 34 1 1.7266 1.9477 0.8991 35 1 3.0314 -0.3778 -1.5429 36 1 1.3495 -0.7644 -2.0398 37 1 4.2536 -2.1776 -1.2954 38 1 8.5204 -3.8437 -2.6176 39 1 5.2001 -6.4501 -3.4859 40 1 5.0996 -8.9073 -3.3631 41 1 4.8220 -10.0209 -1.1845 42 1 4.6346 -8.6768 0.8702 43 1 4.7428 -6.2199 0.7482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446331641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:45 Heat of formation + Delta-G solvation = -120.725962 kcal Electronic energy + Delta-G solvation = -27033.613679 eV Core-core repulsion = 23235.625794 eV Total energy + Delta-G solvation = -3797.987885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.46542 -40.74662 -39.33180 -38.94406 -35.96549 -35.57225 -34.45299 -32.94998 -31.56643 -31.06541 -28.93768 -28.36792 -26.04204 -25.39742 -23.30304 -23.10846 -22.58958 -21.40722 -20.88937 -18.74903 -18.18811 -18.08123 -17.86766 -17.46887 -17.20831 -16.47273 -16.11805 -15.91846 -15.52396 -15.42072 -14.99003 -14.78527 -14.66935 -14.56618 -14.07607 -14.02755 -13.53529 -13.40509 -13.36756 -13.29049 -13.06740 -12.90277 -12.83785 -12.71892 -12.58681 -12.24550 -12.04432 -11.97030 -11.78859 -11.68928 -11.54275 -11.31721 -10.76287 -10.50916 -10.01987 -9.59115 -9.30739 -8.27305 -6.37225 0.71490 0.73837 0.85299 1.35525 1.40441 1.50142 1.78057 2.03836 2.37090 2.46829 2.93927 3.02015 3.15525 3.23274 3.61180 3.70959 3.97833 4.04709 4.19829 4.27553 4.37233 4.46300 4.51988 4.63372 4.72380 4.76326 4.80673 4.84915 4.88700 4.92748 4.93333 5.08514 5.20265 5.30660 5.33467 5.40259 5.45537 5.60070 5.75473 5.75684 5.79538 5.90255 6.19811 6.32415 6.37102 6.57706 6.70067 7.29165 7.42340 8.81011 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.004724 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.257227 B = 5926.166919 C = 7217.199308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.089 3.911 6 H 0.117 0.883 7 N -0.703 5.703 8 C 0.526 3.474 9 O -0.579 6.579 10 C 0.055 3.945 11 H 0.082 0.918 12 C -0.519 4.519 13 H 0.038 0.962 14 C 0.044 3.956 15 N -0.898 5.898 16 Si 0.947 3.053 17 H -0.281 1.281 18 H -0.280 1.280 19 H -0.265 1.265 20 C -0.042 4.042 21 C -0.139 4.139 22 C -0.127 4.127 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.113 4.113 26 C 0.465 3.535 27 O -0.495 6.495 28 O -0.356 6.356 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.417 0.583 38 H 0.271 0.729 39 H 0.115 0.885 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.131 0.869 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 9.620 -3.806 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.058 3.942 3 C -0.197 4.197 4 C -0.175 4.175 5 C -0.019 4.019 6 H 0.135 0.865 7 N -0.358 5.358 8 C 0.316 3.684 9 O -0.459 6.459 10 C 0.033 3.967 11 H 0.100 0.900 12 C -0.557 4.557 13 H 0.057 0.943 14 C -0.159 4.159 15 N -0.535 5.535 16 Si 0.772 3.228 17 H -0.206 1.206 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.043 4.043 21 C -0.157 4.157 22 C -0.144 4.144 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.131 4.131 26 C 0.304 3.696 27 O -0.379 6.379 28 O -0.273 6.273 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.161 0.839 37 H 0.255 0.745 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.149 0.851 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.661 8.836 -3.150 14.201 hybrid contribution 1.302 0.225 0.958 1.633 sum -9.359 9.061 -2.192 13.210 Atomic orbital electron populations 1.22327 0.90928 1.03249 1.05634 1.23594 0.95981 0.93797 0.80803 1.21950 1.02085 0.90485 1.05156 1.23511 1.06372 0.88827 0.98808 1.22251 0.89868 0.99289 0.90486 0.86504 1.45706 1.13482 1.07197 1.69406 1.21655 0.90146 0.82108 0.74495 1.90584 1.45293 1.60225 1.49768 1.18016 0.89032 0.89265 1.00339 0.90041 1.20662 0.95135 1.45756 0.94129 0.94335 1.25446 0.99977 0.94104 0.96385 1.69939 1.22456 1.48083 1.13018 0.85682 0.79383 0.78530 0.79171 1.20627 1.20596 1.18990 1.20129 0.94549 0.96461 0.93162 1.21175 1.02104 0.94895 0.97531 1.21345 1.00405 0.93879 0.98810 1.21286 1.01975 1.00562 0.92028 1.21303 1.01345 0.93220 0.99627 1.20821 1.00333 0.95040 0.96948 1.24157 0.71003 0.81733 0.92669 1.90693 1.45543 1.42890 1.58817 1.87071 1.76849 1.19994 1.43402 0.90825 0.86248 0.93100 0.91735 0.86443 0.90981 0.86785 0.83903 0.74459 0.91990 0.86694 0.83718 0.83357 0.85099 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.78 71.98 0.63 -1.53 16 2 C 0.09 1.67 1.24 -10.26 -0.01 1.65 16 3 C -0.14 -1.66 8.91 71.98 0.64 -1.02 16 4 C -0.14 -2.38 5.97 31.64 0.19 -2.19 16 5 C 0.09 2.73 3.27 44.95 0.15 2.88 16 6 H 0.12 3.72 7.65 -2.39 -0.02 3.70 16 7 N -0.70 -26.45 5.05 -442.72 -2.23 -28.68 16 8 C 0.53 24.84 7.03 87.66 0.62 25.45 16 9 O -0.58 -30.37 15.13 -3.05 -0.05 -30.42 16 10 C 0.05 2.73 2.45 -13.03 -0.03 2.70 16 11 H 0.08 4.19 6.99 -2.38 -0.02 4.18 16 12 C -0.52 -27.59 7.46 25.60 0.19 -27.40 16 13 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 14 C 0.04 2.26 5.45 84.65 0.46 2.72 16 15 N -0.90 -47.19 12.77 21.44 0.27 -46.92 16 16 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 20 C -0.04 -2.07 4.30 -19.87 -0.09 -2.16 16 21 C -0.14 -6.10 9.67 22.27 0.22 -5.88 16 22 C -0.13 -4.65 10.05 22.27 0.22 -4.42 16 23 C -0.14 -4.97 10.05 22.27 0.22 -4.74 16 24 C -0.14 -5.54 10.05 22.27 0.22 -5.32 16 25 C -0.11 -5.52 8.32 22.27 0.19 -5.33 16 26 C 0.47 17.56 8.03 71.44 0.57 18.13 16 27 O -0.50 -24.22 18.00 21.63 0.39 -23.83 16 28 O -0.36 -10.83 10.48 -50.16 -0.53 -11.35 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 33 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 1.73 7.45 -2.39 -0.02 1.71 16 36 H 0.14 1.44 7.92 -2.39 -0.02 1.42 16 37 H 0.42 14.42 8.20 -92.70 -0.76 13.66 16 38 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16 39 H 0.11 4.83 7.96 -2.91 -0.02 4.81 16 40 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.08 4.42 7.89 -2.91 -0.02 4.39 16 Total: -1.00 -76.36 366.42 4.54 -71.82 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.26 Total: 31.69 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.39 Total: -6.46 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.96 Total: -75.60 kcal Atomic # 8 Polarization: -65.42 SS G_CDS: -0.18 Total: -65.60 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -76.36 4.54 -71.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446331641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.910 kcal (2) G-P(sol) polarization free energy of solvation -76.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds