Wall clock time and date at job start Tue Mar 31 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 110.01158 * 2 1 4 4 C 1.54265 * 110.02245 * 238.57409 * 2 1 3 5 5 C 1.54722 * 102.25607 * 225.51450 * 4 2 1 6 6 H 1.08996 * 110.86093 * 266.76005 * 5 4 2 7 7 N 1.46501 * 110.70565 * 143.58799 * 5 4 2 8 8 C 1.34771 * 119.99864 * 159.95356 * 7 5 4 9 9 O 1.21283 * 120.00407 * 0.02562 * 8 7 5 10 10 C 1.50709 * 120.00014 * 180.02562 * 8 7 5 11 11 H 1.09001 * 109.46714 * 300.00726 * 10 8 7 12 12 C 1.50699 * 109.46700 * 60.00625 * 10 8 7 13 13 H 1.07998 * 120.00707 * 33.93744 * 12 10 8 14 14 C 1.37885 * 119.99742 * 213.94209 * 12 10 8 15 15 N 1.31517 * 119.99583 * 6.38495 * 14 12 10 16 16 Si 1.86798 * 120.00161 * 186.39063 * 14 12 10 17 17 H 1.48502 * 109.47043 * 59.99310 * 16 14 12 18 18 H 1.48494 * 109.47243 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46787 * 299.99845 * 16 14 12 20 20 C 1.50695 * 109.47242 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00445 * 293.85335 * 20 10 8 22 22 C 1.38226 * 120.00031 * 179.74173 * 21 20 10 23 23 C 1.38235 * 120.00126 * 0.52990 * 22 21 20 24 24 C 1.38230 * 120.00083 * 359.73961 * 23 22 21 25 25 C 1.38233 * 119.99771 * 114.12040 * 20 10 8 26 26 C 1.51671 * 103.00789 * 25.21268 * 5 4 2 27 27 O 1.20825 * 125.69181 * 151.50736 * 26 5 4 28 28 O 1.34002 * 108.60566 * 331.46621 * 26 5 4 29 29 H 1.09002 * 109.46643 * 300.07703 * 1 2 3 30 30 H 1.08995 * 109.47293 * 180.08222 * 1 2 3 31 31 H 1.08993 * 109.46923 * 60.07514 * 1 2 3 32 32 H 1.09002 * 109.47387 * 59.29778 * 3 2 1 33 33 H 1.09000 * 109.46941 * 179.29901 * 3 2 1 34 34 H 1.09001 * 109.46854 * 299.30057 * 3 2 1 35 35 H 1.08993 * 110.84699 * 343.70514 * 4 2 1 36 36 H 1.08994 * 110.84329 * 107.32927 * 4 2 1 37 37 H 0.97001 * 120.00179 * 339.96290 * 7 5 4 38 38 H 0.97003 * 119.99553 * 179.97438 * 15 14 12 39 39 H 1.07999 * 119.99516 * 359.97438 * 21 20 10 40 40 H 1.08000 * 119.99775 * 180.29202 * 22 21 20 41 41 H 1.08008 * 119.99788 * 179.76760 * 23 22 21 42 42 H 1.08005 * 120.00179 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00177 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0583 -0.7557 -1.2368 5 6 3.1662 -1.6479 -0.6282 6 1 4.1369 -1.1558 -0.6872 7 7 3.2067 -2.9513 -1.2958 8 6 4.3153 -3.7138 -1.2186 9 8 5.2792 -3.3212 -0.5960 10 6 4.3572 -5.0544 -1.9059 11 1 3.5698 -5.6929 -1.5052 12 6 4.1469 -4.8666 -3.3863 13 1 4.5258 -3.9827 -3.8778 14 6 3.4707 -5.8233 -4.1134 15 7 2.9008 -6.8361 -3.4976 16 14 3.3642 -5.6810 -5.9729 17 1 4.7326 -5.6929 -6.5494 18 1 2.5897 -6.8268 -6.5135 19 1 2.6860 -4.4101 -6.3340 20 6 5.6976 -5.7000 -1.6664 21 6 6.8415 -5.1366 -2.2001 22 6 8.0716 -5.7259 -1.9759 23 6 8.1566 -6.8848 -1.2271 24 6 7.0121 -7.4513 -0.6980 25 6 5.7826 -6.8588 -0.9175 26 6 2.7282 -1.7986 0.8161 27 8 2.9709 -2.7414 1.5316 28 8 2.0279 -0.7111 1.1661 29 1 -0.3633 0.5150 0.8893 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3633 0.5126 -0.8906 32 1 1.6850 1.9586 0.8836 33 1 3.1435 1.4273 0.0126 34 1 1.7054 1.9511 -0.8962 35 1 1.2725 -1.3641 -1.6844 36 1 2.4761 -0.0618 -1.9661 37 1 2.4356 -3.2655 -1.7936 38 1 2.4247 -7.5089 -4.0091 39 1 6.7745 -4.2338 -2.7892 40 1 8.9658 -5.2830 -2.3890 41 1 9.1174 -7.3473 -1.0551 42 1 7.0785 -8.3570 -0.1134 43 1 4.8884 -7.3017 -0.5045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001446331644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:48 Heat of formation + Delta-G solvation = -101.154072 kcal Electronic energy + Delta-G solvation = -26913.751095 eV Core-core repulsion = 23116.611910 eV Total energy + Delta-G solvation = -3797.139184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23908 -39.05809 -37.77352 -37.49652 -34.60229 -33.68105 -33.43308 -31.13341 -29.92542 -29.83691 -27.73899 -27.23522 -24.58233 -23.83513 -21.97328 -21.58446 -21.19716 -20.04159 -19.36506 -17.07630 -16.85686 -16.54146 -16.29501 -15.80975 -15.75554 -14.97734 -14.58747 -14.45711 -14.09027 -14.00910 -13.95943 -13.72845 -13.24940 -12.90536 -12.76390 -12.46297 -12.41792 -12.38290 -12.22944 -11.98625 -11.69036 -11.61746 -11.51394 -11.11719 -11.07258 -11.06545 -10.58338 -10.43205 -10.35421 -10.27373 -9.99867 -9.48037 -8.83037 -8.65809 -8.46118 -7.93329 -7.61504 -6.30869 -4.37043 2.18303 2.38976 2.41690 3.08996 3.16943 3.24115 3.25740 3.56490 3.72998 4.11562 4.19005 4.28608 4.42010 4.51342 4.71703 4.83760 5.06662 5.11797 5.26143 5.34479 5.41946 5.48432 5.60170 5.64455 5.73607 5.77926 5.80639 5.90484 5.91680 6.19278 6.28711 6.50217 6.60058 6.80658 6.87735 6.97694 7.00423 7.19526 7.38258 7.44870 7.58789 7.69743 7.74373 7.95477 8.04933 8.22552 8.66719 9.15084 9.28639 10.77630 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004588 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.255091 B = 6101.131707 C = 7552.649175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.107 3.893 3 C -0.153 4.153 4 C -0.153 4.153 5 C 0.091 3.909 6 H 0.127 0.873 7 N -0.712 5.712 8 C 0.534 3.466 9 O -0.556 6.556 10 C 0.051 3.949 11 H 0.094 0.906 12 C -0.518 4.518 13 H 0.062 0.938 14 C 0.076 3.924 15 N -0.878 5.878 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.013 4.013 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.148 4.148 24 C -0.131 4.131 25 C -0.118 4.118 26 C 0.467 3.533 27 O -0.431 6.431 28 O -0.347 6.347 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.411 0.589 38 H 0.268 0.732 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 12.081 1.880 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 C -0.211 4.211 4 C -0.191 4.191 5 C -0.018 4.018 6 H 0.144 0.856 7 N -0.367 5.367 8 C 0.325 3.675 9 O -0.434 6.434 10 C 0.030 3.970 11 H 0.112 0.888 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.130 4.130 15 N -0.513 5.513 16 Si 0.725 3.275 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.014 4.014 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.166 4.166 24 C -0.150 4.150 25 C -0.136 4.136 26 C 0.304 3.696 27 O -0.311 6.311 28 O -0.265 6.265 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.356 11.781 2.856 12.579 hybrid contribution -0.376 -0.228 -1.379 1.448 sum -3.731 11.553 1.477 12.230 Atomic orbital electron populations 1.22121 0.92077 1.03609 1.03399 1.22810 0.95158 0.92660 0.82387 1.22084 1.02359 0.93225 1.03395 1.23313 0.98662 0.99531 0.97599 1.22136 1.01501 0.87970 0.90192 0.85598 1.45726 1.19242 1.16915 1.54847 1.21741 0.80651 0.87452 0.77680 1.90596 1.35745 1.74105 1.42910 1.18114 0.93287 0.88729 0.96823 0.88846 1.20627 1.37496 1.06963 0.90435 0.91939 1.24968 0.94001 0.95001 0.98992 1.69880 1.33085 1.12210 1.36139 0.86551 0.78517 0.77694 0.84719 1.19882 1.21096 1.20007 1.20026 0.95584 0.93815 0.91937 1.20808 0.91791 0.99164 0.98526 1.20948 0.97253 0.96682 1.00416 1.20804 0.97476 0.97359 1.00977 1.20909 0.93073 0.99776 1.01197 1.21015 0.96909 0.96547 0.99159 1.23847 0.75496 0.80092 0.90152 1.90733 1.52917 1.27923 1.59557 1.86823 1.65947 1.37820 1.35896 0.91137 0.91435 0.90068 0.91142 0.91345 0.90135 0.88241 0.87517 0.75232 0.92183 0.87118 0.87579 0.87681 0.87499 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.75 37.16 0.33 -0.87 16 2 C 0.11 1.04 1.36 -89.95 -0.12 0.92 16 3 C -0.15 -1.12 8.75 37.16 0.33 -0.79 16 4 C -0.15 -1.53 5.97 -25.16 -0.15 -1.68 16 5 C 0.09 1.37 3.29 -67.70 -0.22 1.15 16 6 H 0.13 1.96 7.69 -51.93 -0.40 1.56 16 7 N -0.71 -12.99 5.03 -53.58 -0.27 -13.26 16 8 C 0.53 12.02 7.00 -10.98 -0.08 11.94 16 9 O -0.56 -13.79 15.15 5.56 0.08 -13.70 16 10 C 0.05 1.23 2.44 -94.07 -0.23 1.00 16 11 H 0.09 2.41 7.00 -51.93 -0.36 2.04 16 12 C -0.52 -12.64 7.46 -34.44 -0.26 -12.90 16 13 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 14 C 0.08 1.88 5.45 -17.82 -0.10 1.78 16 15 N -0.88 -22.89 12.78 55.43 0.71 -22.18 16 16 Si 0.90 19.47 29.54 -169.99 -5.02 14.45 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 C -0.01 -0.30 4.30 -104.63 -0.45 -0.75 16 21 C -0.08 -1.92 8.31 -39.59 -0.33 -2.25 16 22 C -0.13 -2.70 10.05 -39.59 -0.40 -3.10 16 23 C -0.15 -2.82 10.05 -39.59 -0.40 -3.21 16 24 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 25 C -0.12 -2.67 9.67 -39.58 -0.38 -3.05 16 26 C 0.47 8.15 8.32 36.48 0.30 8.45 16 27 O -0.43 -9.47 17.89 -18.37 -0.33 -9.80 16 28 O -0.35 -4.98 10.32 -38.27 -0.39 -5.37 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.91 7.46 -51.93 -0.39 0.52 16 36 H 0.11 0.83 7.78 -51.93 -0.40 0.43 16 37 H 0.41 6.97 8.27 -40.82 -0.34 6.64 16 38 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.11 2.50 7.89 -52.49 -0.41 2.08 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 42 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.11 2.48 7.95 -52.49 -0.42 2.06 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -31.95 366.45 -8.33 -40.28 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.07 Total: 10.45 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.56 Total: -6.38 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.44 Total: -35.44 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.64 Total: -28.88 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.95 -8.33 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446331644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.871 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds