Wall clock time and date at job start Tue Mar 31 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 110.01158 * 2 1 4 4 C 1.54265 * 110.02245 * 238.57409 * 2 1 3 5 5 C 1.54722 * 102.25607 * 225.51450 * 4 2 1 6 6 H 1.08996 * 110.86093 * 266.76005 * 5 4 2 7 7 N 1.46501 * 110.70565 * 143.58799 * 5 4 2 8 8 C 1.34771 * 119.99864 * 159.95356 * 7 5 4 9 9 O 1.21283 * 120.00407 * 0.02562 * 8 7 5 10 10 C 1.50709 * 120.00014 * 180.02562 * 8 7 5 11 11 H 1.09001 * 109.46714 * 300.00726 * 10 8 7 12 12 C 1.50699 * 109.46700 * 60.00625 * 10 8 7 13 13 H 1.07998 * 120.00707 * 33.93744 * 12 10 8 14 14 C 1.37885 * 119.99742 * 213.94209 * 12 10 8 15 15 N 1.31517 * 119.99583 * 6.38495 * 14 12 10 16 16 Si 1.86798 * 120.00161 * 186.39063 * 14 12 10 17 17 H 1.48502 * 109.47043 * 59.99310 * 16 14 12 18 18 H 1.48494 * 109.47243 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46787 * 299.99845 * 16 14 12 20 20 C 1.50695 * 109.47242 * 180.02562 * 10 8 7 21 21 C 1.38237 * 120.00445 * 293.85335 * 20 10 8 22 22 C 1.38226 * 120.00031 * 179.74173 * 21 20 10 23 23 C 1.38235 * 120.00126 * 0.52990 * 22 21 20 24 24 C 1.38230 * 120.00083 * 359.73961 * 23 22 21 25 25 C 1.38233 * 119.99771 * 114.12040 * 20 10 8 26 26 C 1.51671 * 103.00789 * 25.21268 * 5 4 2 27 27 O 1.20825 * 125.69181 * 151.50736 * 26 5 4 28 28 O 1.34002 * 108.60566 * 331.46621 * 26 5 4 29 29 H 1.09002 * 109.46643 * 300.07703 * 1 2 3 30 30 H 1.08995 * 109.47293 * 180.08222 * 1 2 3 31 31 H 1.08993 * 109.46923 * 60.07514 * 1 2 3 32 32 H 1.09002 * 109.47387 * 59.29778 * 3 2 1 33 33 H 1.09000 * 109.46941 * 179.29901 * 3 2 1 34 34 H 1.09001 * 109.46854 * 299.30057 * 3 2 1 35 35 H 1.08993 * 110.84699 * 343.70514 * 4 2 1 36 36 H 1.08994 * 110.84329 * 107.32927 * 4 2 1 37 37 H 0.97001 * 120.00179 * 339.96290 * 7 5 4 38 38 H 0.97003 * 119.99553 * 179.97438 * 15 14 12 39 39 H 1.07999 * 119.99516 * 359.97438 * 21 20 10 40 40 H 1.08000 * 119.99775 * 180.29202 * 22 21 20 41 41 H 1.08008 * 119.99788 * 179.76760 * 23 22 21 42 42 H 1.08005 * 120.00179 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00177 * 0.02562 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0583 -0.7557 -1.2368 5 6 3.1662 -1.6479 -0.6282 6 1 4.1369 -1.1558 -0.6872 7 7 3.2067 -2.9513 -1.2958 8 6 4.3153 -3.7138 -1.2186 9 8 5.2792 -3.3212 -0.5960 10 6 4.3572 -5.0544 -1.9059 11 1 3.5698 -5.6929 -1.5052 12 6 4.1469 -4.8666 -3.3863 13 1 4.5258 -3.9827 -3.8778 14 6 3.4707 -5.8233 -4.1134 15 7 2.9008 -6.8361 -3.4976 16 14 3.3642 -5.6810 -5.9729 17 1 4.7326 -5.6929 -6.5494 18 1 2.5897 -6.8268 -6.5135 19 1 2.6860 -4.4101 -6.3340 20 6 5.6976 -5.7000 -1.6664 21 6 6.8415 -5.1366 -2.2001 22 6 8.0716 -5.7259 -1.9759 23 6 8.1566 -6.8848 -1.2271 24 6 7.0121 -7.4513 -0.6980 25 6 5.7826 -6.8588 -0.9175 26 6 2.7282 -1.7986 0.8161 27 8 2.9709 -2.7414 1.5316 28 8 2.0279 -0.7111 1.1661 29 1 -0.3633 0.5150 0.8893 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3633 0.5126 -0.8906 32 1 1.6850 1.9586 0.8836 33 1 3.1435 1.4273 0.0126 34 1 1.7054 1.9511 -0.8962 35 1 1.2725 -1.3641 -1.6844 36 1 2.4761 -0.0618 -1.9661 37 1 2.4356 -3.2655 -1.7936 38 1 2.4247 -7.5089 -4.0091 39 1 6.7745 -4.2338 -2.7892 40 1 8.9658 -5.2830 -2.3890 41 1 9.1174 -7.3473 -1.0551 42 1 7.0785 -8.3570 -0.1134 43 1 4.8884 -7.3017 -0.5045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001446331644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:48 Heat of formation + Delta-G solvation = -120.249168 kcal Electronic energy + Delta-G solvation = -26914.579120 eV Core-core repulsion = 23116.611910 eV Total energy + Delta-G solvation = -3797.967210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.43631 -40.73930 -39.33689 -38.94591 -35.99004 -35.52824 -34.47696 -32.92756 -31.56343 -31.10023 -28.92613 -28.31892 -25.98010 -25.37289 -23.33413 -23.17270 -22.56385 -21.39788 -20.88463 -18.77364 -18.22067 -18.08033 -17.68962 -17.40407 -17.13837 -16.37735 -16.31257 -15.88152 -15.59099 -15.31858 -15.01539 -14.83142 -14.74613 -14.47087 -14.07306 -14.02243 -13.67518 -13.39511 -13.30916 -13.21043 -13.11144 -12.85215 -12.76092 -12.68738 -12.53069 -12.18939 -12.02374 -11.99021 -11.78221 -11.67099 -11.48531 -11.29727 -10.71554 -10.49565 -10.00117 -9.58642 -9.29547 -8.20848 -6.32829 0.72396 0.75669 0.86090 1.44662 1.48664 1.54746 1.80165 2.00454 2.37033 2.43604 2.92603 3.07378 3.18193 3.25706 3.58569 3.68387 3.98024 4.06194 4.19924 4.27714 4.37796 4.47447 4.52555 4.69461 4.71200 4.76340 4.83234 4.85188 4.87718 4.92203 4.94268 5.09972 5.22068 5.32555 5.33494 5.40560 5.44414 5.64374 5.75779 5.78874 5.80271 5.92534 6.20451 6.33570 6.37344 6.59409 6.74858 7.33941 7.43761 8.87696 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004588 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.255091 B = 6101.131707 C = 7552.649175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 C -0.152 4.152 4 C -0.139 4.139 5 C 0.087 3.913 6 H 0.124 0.876 7 N -0.702 5.702 8 C 0.533 3.467 9 O -0.585 6.585 10 C 0.052 3.948 11 H 0.064 0.936 12 C -0.516 4.516 13 H 0.061 0.939 14 C 0.034 3.966 15 N -0.910 5.910 16 Si 0.958 3.042 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.257 1.257 20 C -0.042 4.042 21 C -0.108 4.108 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.131 4.131 25 C -0.147 4.147 26 C 0.467 3.533 27 O -0.492 6.492 28 O -0.355 6.355 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.417 0.583 38 H 0.267 0.733 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 13.837 0.274 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.062 3.938 3 C -0.208 4.208 4 C -0.176 4.176 5 C -0.021 4.021 6 H 0.141 0.859 7 N -0.356 5.356 8 C 0.322 3.678 9 O -0.465 6.465 10 C 0.031 3.969 11 H 0.082 0.918 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.168 4.168 15 N -0.546 5.546 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.181 1.181 20 C -0.043 4.043 21 C -0.126 4.126 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.148 4.148 25 C -0.166 4.166 26 C 0.307 3.693 27 O -0.377 6.377 28 O -0.272 6.272 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.254 0.746 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.137 13.603 1.232 14.014 hybrid contribution -0.457 -0.708 -0.803 1.164 sum -3.595 12.894 0.429 13.393 Atomic orbital electron populations 1.22186 0.90209 1.03401 1.05268 1.23358 0.96569 0.93424 0.80438 1.22152 1.01994 0.91407 1.05284 1.23451 0.96971 0.99051 0.98163 1.22393 1.03426 0.87028 0.89249 0.85883 1.45574 1.18052 1.17795 1.54155 1.21507 0.81389 0.87452 0.77413 1.90558 1.37065 1.74706 1.44156 1.18007 0.92898 0.89155 0.96840 0.91846 1.20713 1.37061 1.06864 0.90700 0.92031 1.25656 0.93711 0.94626 1.02826 1.70008 1.34092 1.13021 1.37509 0.85614 0.78098 0.78251 0.79785 1.20440 1.21242 1.18103 1.20160 0.95944 0.94761 0.93461 1.20871 0.92763 0.99491 0.99468 1.21360 0.97258 0.96788 0.99775 1.21292 0.98891 0.96602 0.99258 1.21297 0.92255 1.00507 1.00782 1.21152 0.98075 0.97040 1.00315 1.24195 0.74779 0.79856 0.90464 1.90693 1.55312 1.30563 1.61127 1.86814 1.65088 1.36701 1.38605 0.90718 0.92709 0.86754 0.90762 0.91991 0.86794 0.87010 0.84185 0.74592 0.92341 0.88044 0.84281 0.83378 0.84385 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.75 71.98 0.63 -1.32 16 2 C 0.10 1.68 1.36 -10.36 -0.01 1.67 16 3 C -0.15 -1.72 8.75 71.98 0.63 -1.09 16 4 C -0.14 -2.44 5.97 31.61 0.19 -2.25 16 5 C 0.09 2.63 3.29 45.14 0.15 2.78 16 6 H 0.12 3.85 7.69 -2.39 -0.02 3.84 16 7 N -0.70 -26.36 5.03 -441.81 -2.22 -28.58 16 8 C 0.53 25.08 7.00 87.66 0.61 25.70 16 9 O -0.58 -30.33 15.15 -3.04 -0.05 -30.37 16 10 C 0.05 2.63 2.44 -13.03 -0.03 2.60 16 11 H 0.06 3.52 7.00 -2.39 -0.02 3.51 16 12 C -0.52 -25.83 7.46 25.60 0.19 -25.64 16 13 H 0.06 3.03 7.82 -2.91 -0.02 3.01 16 14 C 0.03 1.70 5.45 84.66 0.46 2.16 16 15 N -0.91 -48.90 12.78 21.45 0.27 -48.62 16 16 Si 0.96 39.84 29.54 68.60 2.03 41.87 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 20 C -0.04 -2.10 4.30 -19.87 -0.09 -2.19 16 21 C -0.11 -4.96 8.31 22.27 0.19 -4.77 16 22 C -0.13 -5.16 10.05 22.27 0.22 -4.93 16 23 C -0.14 -5.07 10.05 22.27 0.22 -4.84 16 24 C -0.13 -5.08 10.05 22.27 0.22 -4.85 16 25 C -0.15 -6.91 9.67 22.27 0.22 -6.70 16 26 C 0.47 16.87 8.32 71.55 0.59 17.46 16 27 O -0.49 -23.00 17.89 21.60 0.39 -22.62 16 28 O -0.36 -10.13 10.32 -49.61 -0.51 -10.64 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.11 1.74 7.46 -2.39 -0.02 1.72 16 36 H 0.14 1.59 7.78 -2.39 -0.02 1.58 16 37 H 0.42 14.48 8.27 -92.71 -0.77 13.71 16 38 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 39 H 0.10 4.71 7.89 -2.91 -0.02 4.69 16 40 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 41 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.10 4.79 7.95 -2.91 -0.02 4.76 16 Total: -1.00 -74.18 366.45 4.56 -69.62 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.26 Total: 35.57 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.40 Total: -6.22 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -1.95 Total: -77.20 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: -0.17 Total: -63.63 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -74.18 4.56 -69.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001446331644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.632 kcal (2) G-P(sol) polarization free energy of solvation -74.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds