Wall clock time and date at job start Tue Mar 31 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 110.28927 * 2 1 4 4 O 1.20828 * 120.00452 * 122.13511 * 3 2 1 5 5 O 1.34235 * 120.00283 * 302.13202 * 3 2 1 6 6 C 1.54613 * 110.41276 * 237.80735 * 2 1 3 7 7 C 1.54593 * 102.91196 * 262.75989 * 6 2 1 8 8 N 1.48118 * 103.42559 * 322.87061 * 7 6 2 9 9 C 1.34768 * 127.03548 * 219.28744 * 8 7 6 10 10 O 1.21288 * 120.00310 * 179.68100 * 9 8 7 11 11 C 1.50704 * 120.00198 * 359.68128 * 9 8 7 12 12 H 1.09009 * 109.46598 * 299.99807 * 11 9 8 13 13 C 1.50698 * 109.47157 * 59.99896 * 11 9 8 14 14 H 1.08001 * 120.00057 * 26.91991 * 13 11 9 15 15 C 1.37875 * 119.99930 * 206.92607 * 13 11 9 16 16 N 1.31516 * 120.00017 * 353.95984 * 15 13 11 17 17 Si 1.86802 * 120.00080 * 173.95820 * 15 13 11 18 18 H 1.48497 * 109.47365 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46917 * 300.00065 * 17 15 13 20 20 H 1.48498 * 109.47051 * 59.99683 * 17 15 13 21 21 C 1.50695 * 109.47372 * 180.02562 * 11 9 8 22 22 C 1.38242 * 119.99611 * 293.28279 * 21 11 9 23 23 C 1.38237 * 119.99612 * 179.76994 * 22 21 11 24 24 C 1.38242 * 120.00097 * 0.50217 * 23 22 21 25 25 C 1.38232 * 119.99877 * 359.74873 * 24 23 22 26 26 C 1.38235 * 120.00219 * 113.55859 * 21 11 9 27 27 C 1.47486 * 105.92823 * 39.01999 * 8 7 6 28 28 H 1.08996 * 109.47197 * 297.86709 * 1 2 3 29 29 H 1.09000 * 109.47360 * 57.86606 * 1 2 3 30 30 H 1.08994 * 109.47289 * 177.86841 * 1 2 3 31 31 H 0.96695 * 117.00014 * 180.02562 * 5 3 2 32 32 H 1.09004 * 110.74198 * 21.25033 * 6 2 1 33 33 H 1.09001 * 110.74085 * 144.39175 * 6 2 1 34 34 H 1.08996 * 110.62124 * 204.35395 * 7 6 2 35 35 H 1.09003 * 110.54579 * 81.34928 * 7 6 2 36 36 H 0.96995 * 120.00156 * 354.72191 * 16 15 13 37 37 H 1.07989 * 120.00033 * 359.97438 * 22 21 11 38 38 H 1.08000 * 119.99708 * 180.23146 * 23 22 21 39 39 H 1.08002 * 119.99775 * 179.72756 * 24 23 22 40 40 H 1.07998 * 119.99683 * 179.97438 * 25 24 23 41 41 H 1.07994 * 120.00303 * 359.97438 * 26 21 11 42 42 H 1.08999 * 109.91129 * 94.14654 * 27 8 7 43 43 H 1.09006 * 109.91203 * 215.22823 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0525 1.4135 0.0000 4 8 2.7841 1.7872 0.8860 5 8 1.7054 2.2575 -0.9844 6 6 2.0692 -0.7720 -1.2263 7 6 2.3677 -2.1742 -0.6478 8 7 2.8825 -1.8835 0.7103 9 6 3.8946 -2.5068 1.3454 10 8 4.2160 -2.1587 2.4619 11 6 4.6273 -3.6363 0.6682 12 1 3.9259 -4.4389 0.4396 13 6 5.2519 -3.1359 -0.6087 14 1 5.5201 -2.0944 -0.7066 15 6 5.4808 -4.0078 -1.6520 16 7 5.2654 -5.2953 -1.4923 17 14 6.0968 -3.3603 -3.2923 18 1 6.2624 -4.4912 -4.2403 19 1 5.1144 -2.3922 -3.8427 20 1 7.4037 -2.6826 -3.0977 21 6 5.7045 -4.1571 1.5844 22 6 6.7867 -3.3582 1.9029 23 6 7.7724 -3.8342 2.7471 24 6 7.6812 -5.1129 3.2646 25 6 6.6015 -5.9136 2.9419 26 6 5.6132 -5.4358 2.1017 27 6 2.0649 -0.7681 1.2228 28 1 -0.3633 0.4803 0.9085 29 1 -0.3634 0.5466 -0.8702 30 1 -0.3633 -1.0269 -0.0382 31 1 2.0658 3.1537 -0.9417 32 1 1.3135 -0.8286 -2.0097 33 1 2.9806 -0.3085 -1.6040 34 1 3.1243 -2.6828 -1.2452 35 1 1.4553 -2.7681 -0.5943 36 1 5.0194 -5.6414 -0.6202 37 1 6.8604 -2.3611 1.4949 38 1 8.6161 -3.2087 2.9990 39 1 8.4535 -5.4863 3.9206 40 1 6.5305 -6.9127 3.3458 41 1 4.7698 -6.0614 1.8497 42 1 1.2331 -1.1568 1.8102 43 1 2.6786 -0.1104 1.8386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571028968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:23 Heat of formation + Delta-G solvation = -126.323750 kcal Electronic energy + Delta-G solvation = -27430.493575 eV Core-core repulsion = 23632.262951 eV Total energy + Delta-G solvation = -3798.230623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.03373 -40.92957 -39.69369 -38.40276 -37.18724 -35.95357 -34.00184 -32.65884 -31.67534 -30.54395 -29.39422 -27.30297 -26.10110 -25.30023 -23.71599 -23.28736 -22.40120 -20.82923 -20.42392 -19.27878 -18.87442 -18.00953 -17.60929 -17.39694 -16.80150 -16.66812 -16.14756 -15.94057 -15.68447 -15.52141 -14.98788 -14.86651 -14.50646 -14.15878 -14.05811 -13.91733 -13.78292 -13.61266 -13.33641 -13.12691 -13.08554 -12.77906 -12.74453 -12.63405 -12.56596 -12.07229 -11.98671 -11.93958 -11.83844 -11.70883 -11.41516 -10.92918 -10.69245 -10.54678 -9.69827 -9.66450 -9.37632 -8.61524 -6.36163 0.61865 0.67024 1.08528 1.55692 1.60788 1.75303 1.81417 1.84863 2.25428 2.55812 3.04942 3.18406 3.20110 3.48942 3.79573 4.05390 4.14645 4.18190 4.19434 4.26948 4.28326 4.31561 4.35955 4.61202 4.63422 4.69138 4.77068 4.80137 4.87496 4.89943 4.96885 5.01898 5.08228 5.22767 5.28219 5.28868 5.47297 5.53823 5.65880 5.69581 5.71731 6.02232 6.13364 6.27832 6.48951 6.62397 6.90368 7.29744 7.38362 8.75901 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.005096 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.361633 B = 5493.206226 C = 6658.770772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C 0.496 3.504 4 O -0.554 6.554 5 O -0.496 6.496 6 C -0.106 4.106 7 C 0.087 3.913 8 N -0.617 5.617 9 C 0.543 3.457 10 O -0.597 6.597 11 C 0.054 3.946 12 H 0.052 0.948 13 C -0.578 4.578 14 H 0.038 0.962 15 C -0.001 4.001 16 N -0.915 5.915 17 Si 1.098 2.902 18 H -0.283 1.283 19 H -0.254 1.254 20 H -0.287 1.287 21 C -0.050 4.050 22 C -0.109 4.109 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.147 4.147 27 C 0.107 3.893 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.428 0.572 32 H 0.134 0.866 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 7.498 -1.426 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C 0.339 3.661 4 O -0.445 6.445 5 O -0.309 6.309 6 C -0.144 4.144 7 C -0.035 4.035 8 N -0.349 5.349 9 C 0.335 3.665 10 O -0.479 6.479 11 C 0.033 3.967 12 H 0.070 0.930 13 C -0.615 4.615 14 H 0.056 0.944 15 C -0.204 4.204 16 N -0.549 5.549 17 Si 0.921 3.079 18 H -0.208 1.208 19 H -0.178 1.178 20 H -0.214 1.214 21 C -0.051 4.051 22 C -0.128 4.128 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.143 4.143 26 C -0.165 4.165 27 C -0.016 4.016 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.289 0.711 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.990 6.888 -2.127 11.524 hybrid contribution 0.315 1.178 1.889 2.248 sum -8.675 8.067 -0.238 11.848 Atomic orbital electron populations 1.21895 0.87063 1.05164 1.04331 1.21393 1.00481 0.87099 0.97292 1.23353 0.76279 0.88563 0.77865 1.90736 1.36540 1.78281 1.38929 1.84463 1.70093 1.28217 1.48115 1.22742 1.02403 0.93412 0.95860 1.22914 1.00578 0.97792 0.82173 1.48629 1.32936 1.34571 1.18773 1.21023 0.77682 0.83584 0.84243 1.90566 1.67265 1.68338 1.21691 1.18020 0.92561 0.92329 0.93838 0.93039 1.21439 1.45526 0.96233 0.98335 0.94374 1.26895 0.93835 0.93796 1.05843 1.70863 1.43302 1.13751 1.27024 0.83178 0.76985 0.75611 0.72176 1.20831 1.17846 1.21357 1.20209 0.96434 0.94280 0.94172 1.20797 0.94890 0.98747 0.98324 1.21342 0.98808 0.97201 0.97900 1.21323 0.99104 0.93915 1.01369 1.21341 0.94257 1.00624 0.98045 1.21164 1.00330 0.95666 0.99355 1.22132 0.95218 0.88661 0.95585 0.91348 0.88669 0.89073 0.71084 0.84770 0.92110 0.88559 0.88963 0.92362 0.89527 0.84721 0.83130 0.83660 0.86995 0.89207 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.15 71.98 0.59 -1.35 16 2 C -0.06 -1.49 0.91 -52.04 -0.05 -1.53 16 3 C 0.50 13.17 6.85 71.23 0.49 13.66 16 4 O -0.55 -19.84 16.00 21.96 0.35 -19.49 16 5 O -0.50 -8.80 13.28 -51.47 -0.68 -9.49 16 6 C -0.11 -2.64 6.15 31.69 0.19 -2.45 16 7 C 0.09 2.81 6.74 86.61 0.58 3.40 16 8 N -0.62 -24.65 3.29 -810.09 -2.66 -27.31 16 9 C 0.54 26.67 7.14 87.66 0.63 27.30 16 10 O -0.60 -32.79 15.78 -3.06 -0.05 -32.83 16 11 C 0.05 2.69 1.47 -13.03 -0.02 2.67 16 12 H 0.05 2.66 6.78 -2.38 -0.02 2.64 16 13 C -0.58 -29.83 5.21 25.60 0.13 -29.69 16 14 H 0.04 2.07 7.82 -2.91 -0.02 2.04 16 15 C 0.00 -0.07 5.35 84.65 0.45 0.38 16 16 N -0.91 -50.24 13.56 21.45 0.29 -49.95 16 17 Si 1.10 45.90 29.91 68.60 2.05 47.95 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 21 C -0.05 -2.48 4.06 -19.87 -0.08 -2.56 16 22 C -0.11 -5.32 8.34 22.27 0.19 -5.13 16 23 C -0.13 -5.42 10.05 22.27 0.22 -5.20 16 24 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 25 C -0.12 -4.66 10.05 22.27 0.22 -4.43 16 26 C -0.15 -6.53 9.27 22.27 0.21 -6.32 16 27 C 0.11 3.58 6.22 86.53 0.54 4.12 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.43 4.15 9.10 -74.06 -0.67 3.47 16 32 H 0.13 2.23 7.86 -2.38 -0.02 2.21 16 33 H 0.06 1.75 7.86 -2.39 -0.02 1.73 16 34 H 0.10 3.77 5.48 -2.39 -0.01 3.75 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.27 14.76 6.32 -92.71 -0.59 14.18 16 37 H 0.09 4.50 7.87 -2.92 -0.02 4.48 16 38 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 40 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.11 4.74 7.96 -2.91 -0.02 4.71 16 42 H 0.09 2.61 7.68 -2.39 -0.02 2.59 16 43 H 0.06 2.41 6.34 -2.38 -0.02 2.39 16 Total: -1.00 -75.90 356.88 4.36 -71.54 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.54 Total: 31.46 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.52 Total: -11.88 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -2.37 Total: -77.26 kcal Atomic # 8 Polarization: -61.43 SS G_CDS: -0.38 Total: -61.81 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.05 Total: 47.95 kcal Total: -75.90 4.36 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571028968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.789 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds