Wall clock time and date at job start Tue Mar 31 2020 12:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47010 * 116.54337 * 3 2 1 5 5 C 1.36938 * 119.99419 * 263.90887 * 4 3 2 6 6 H 1.08001 * 119.99821 * 199.35881 * 5 4 3 7 7 C 1.38809 * 120.00171 * 19.36448 * 5 4 3 8 8 N 1.31623 * 120.00112 * 22.30283 * 7 5 4 9 9 Si 1.86806 * 120.00015 * 202.29982 * 7 5 4 10 10 H 1.48500 * 109.47022 * 59.99949 * 9 7 5 11 11 H 1.48500 * 109.46903 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47117 * 300.00009 * 9 7 5 13 13 C 1.46494 * 120.00671 * 83.90865 * 4 3 2 14 14 C 1.50703 * 109.47280 * 89.99639 * 13 4 3 15 15 C 1.38256 * 119.94675 * 269.73194 * 14 13 4 16 16 C 1.38145 * 120.05670 * 179.72016 * 15 14 13 17 17 C 1.50703 * 120.03054 * 180.24888 * 16 15 14 18 18 C 1.38739 * 119.93983 * 0.53008 * 16 15 14 19 19 O 1.35903 * 120.05455 * 179.72065 * 18 16 15 20 20 C 1.42895 * 117.00195 * 270.02293 * 19 18 16 21 21 C 1.50706 * 109.46998 * 180.02562 * 20 19 18 22 22 O 1.20823 * 119.99839 * 359.97438 * 21 20 19 23 23 O 1.34225 * 119.99855 * 180.02562 * 21 20 19 24 24 C 1.38729 * 119.89174 * 359.74441 * 18 16 15 25 25 C 1.50693 * 120.02910 * 179.97438 * 24 18 16 26 26 C 1.38148 * 119.94120 * 0.02562 * 24 18 16 27 27 H 4.40636 * 5.51518 * 180.02562 * 4 1 2 28 28 H 1.08990 * 109.47736 * 356.53980 * 3 2 1 29 29 H 1.09003 * 109.47127 * 236.53163 * 3 2 1 30 30 H 0.97002 * 119.99658 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47440 * 210.00529 * 13 4 3 32 32 H 1.09002 * 109.46989 * 330.00225 * 13 4 3 33 33 H 1.07998 * 119.97699 * 359.97438 * 15 14 13 34 34 H 1.09000 * 109.46957 * 270.27571 * 17 16 15 35 35 H 1.09000 * 109.47050 * 30.28183 * 17 16 15 36 36 H 1.09010 * 109.46748 * 150.27866 * 17 16 15 37 37 H 1.08992 * 109.47306 * 299.99811 * 20 19 18 38 38 H 1.08996 * 109.47246 * 60.00061 * 20 19 18 39 39 H 0.96704 * 117.00398 * 179.97438 * 23 21 20 40 40 H 1.09005 * 109.47181 * 270.01867 * 25 24 18 41 41 H 1.08993 * 109.47659 * 30.01645 * 25 24 18 42 42 H 1.08997 * 109.47282 * 150.02569 * 25 24 18 43 43 H 1.07995 * 119.96896 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.6181 -1.2357 5 6 3.4812 -0.1670 -2.3025 6 1 4.1190 0.2285 -3.0791 7 6 3.0132 -1.4712 -2.3859 8 7 1.9289 -1.8246 -1.7288 9 14 3.9223 -2.7247 -3.4308 10 1 5.3117 -2.8736 -2.9283 11 1 3.2244 -4.0332 -3.3531 12 1 3.9531 -2.2637 -4.8421 13 6 3.2506 2.0754 -1.3300 14 6 4.6226 2.5001 -0.8737 15 6 4.8438 2.8052 0.4566 16 6 6.1019 3.1892 0.8784 17 6 6.3437 3.5162 2.3296 18 6 7.1414 3.2793 -0.0360 19 8 8.3787 3.6624 0.3754 20 6 8.6669 5.0617 0.3487 21 6 10.0743 5.2940 0.8351 22 8 10.7598 4.3574 1.1707 23 8 10.5658 6.5416 0.8964 24 6 6.9155 2.9782 -1.3713 25 6 8.0422 3.0756 -2.3673 26 6 5.6566 2.5900 -1.7872 27 1 -1.0501 0.0001 0.0002 28 1 3.0098 -1.0248 0.0620 29 1 3.0090 0.5676 0.8573 30 1 1.6017 -2.7359 -1.7874 31 1 3.0992 2.3858 -2.3638 32 1 2.4964 2.5420 -0.6964 33 1 4.0333 2.7392 1.1673 34 1 6.1581 4.5769 2.4988 35 1 5.6712 2.9257 2.9519 36 1 7.3767 3.2824 2.5875 37 1 8.5695 5.4333 -0.6713 38 1 7.9666 5.5894 0.9961 39 1 11.4733 6.6408 1.2152 40 1 8.0699 4.0810 -2.7874 41 1 8.9878 2.8642 -1.8682 42 1 7.8837 2.3521 -3.1670 43 1 5.4804 2.3551 -2.8265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588464743.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:38 Heat of formation + Delta-G solvation = -41.822238 kcal Electronic energy + Delta-G solvation = -26159.937507 eV Core-core repulsion = 22365.371144 eV Total energy + Delta-G solvation = -3794.566363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59531 -40.88443 -38.83601 -37.48792 -37.04546 -34.48673 -33.86672 -33.42859 -31.77302 -30.16582 -28.47804 -27.99313 -27.41046 -26.75802 -23.76287 -22.85044 -21.87340 -21.31986 -19.37908 -19.29941 -18.36531 -18.14778 -17.91621 -17.77651 -16.96637 -16.76209 -15.93738 -15.61673 -15.57226 -15.33436 -14.83301 -14.70657 -14.54444 -14.35016 -14.04317 -13.85219 -13.61927 -13.53886 -13.38103 -13.27505 -12.93944 -12.70846 -12.65849 -12.51974 -12.27285 -12.26314 -12.21739 -12.05922 -11.87829 -11.59469 -10.95470 -10.78119 -10.69088 -10.32497 -9.43513 -9.31284 -8.89646 -7.81950 -5.24667 0.22160 0.47731 1.10211 1.46162 1.50524 1.55251 1.58610 2.32231 2.53421 2.60067 2.70789 3.09393 3.30177 3.88697 3.89376 3.95051 4.03935 4.09256 4.12622 4.14145 4.23794 4.45548 4.46675 4.58170 4.63639 4.70484 4.77709 4.79703 4.88452 4.91736 5.03090 5.06879 5.20456 5.28345 5.39464 5.53268 5.54879 5.59789 5.66801 5.69675 5.85530 5.85971 6.30461 6.51650 6.94118 7.11082 7.37708 7.83321 8.26634 9.18827 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.003298 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.895599 B = 8486.771522 C = 9436.558023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.134 4.134 3 C 0.274 3.726 4 N -0.590 5.590 5 C -0.266 4.266 6 H 0.074 0.926 7 C -0.042 4.042 8 N -0.910 5.910 9 Si 0.952 3.048 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.277 1.277 13 C 0.183 3.817 14 C -0.080 4.080 15 C -0.113 4.113 16 C -0.098 4.098 17 C -0.108 4.108 18 C 0.069 3.931 19 O -0.326 6.326 20 C 0.065 3.935 21 C 0.492 3.508 22 O -0.540 6.540 23 O -0.502 6.502 24 C -0.101 4.101 25 C -0.109 4.109 26 C -0.109 4.109 27 H 0.222 0.778 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.246 0.754 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.435 0.565 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.015 18.560 5.512 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.137 4.137 3 C 0.148 3.852 4 N -0.310 5.310 5 C -0.395 4.395 6 H 0.092 0.908 7 C -0.238 4.238 8 N -0.555 5.555 9 Si 0.781 3.219 10 H -0.211 1.211 11 H -0.225 1.225 12 H -0.203 1.203 13 C 0.057 3.943 14 C -0.083 4.083 15 C -0.132 4.132 16 C -0.099 4.099 17 C -0.164 4.164 18 C 0.026 3.974 19 O -0.243 6.243 20 C -0.010 4.010 21 C 0.334 3.666 22 O -0.430 6.430 23 O -0.317 6.317 24 C -0.101 4.101 25 C -0.165 4.165 26 C -0.128 4.128 27 H 0.238 0.762 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.298 0.702 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.904 17.999 5.502 22.270 hybrid contribution 0.379 -1.217 -0.610 1.413 sum 12.283 16.782 4.892 21.365 Atomic orbital electron populations 1.24992 0.96335 1.05153 1.04433 1.24611 0.96060 0.96392 0.96605 1.17586 0.82906 0.97402 0.87284 1.44091 1.74693 1.00753 1.11414 1.19363 1.23646 0.94348 1.02180 0.90844 1.25498 0.96848 1.00400 1.01088 1.70273 1.20556 1.17573 1.47100 0.85575 0.78379 0.78840 0.79060 1.21096 1.22478 1.20325 1.19835 0.91347 0.83520 0.99584 1.20871 0.97921 0.95430 0.94077 1.20910 0.96496 1.00525 0.95220 1.20339 0.92158 1.00097 0.97279 1.20724 1.02649 1.02898 0.90169 1.18166 0.83913 1.04052 0.91315 1.85983 1.29691 1.22334 1.86336 1.22045 0.90828 0.83264 1.04837 1.22935 0.89310 0.80542 0.73774 1.90771 1.61105 1.45064 1.46015 1.84414 1.38543 1.29168 1.79548 1.20329 0.95606 1.00120 0.94062 1.20711 0.95415 1.03325 0.97050 1.20870 0.91815 1.00194 0.99900 0.76154 0.92172 0.92029 0.94447 0.92734 0.92443 0.85148 0.89278 0.90714 0.91773 0.86560 0.86344 0.70179 0.89277 0.91650 0.91302 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.83 19.25 74.32 1.43 -11.40 16 2 C -0.13 -6.43 11.50 31.12 0.36 -6.07 16 3 C 0.27 12.91 5.41 84.57 0.46 13.37 16 4 N -0.59 -28.07 2.47 -716.93 -1.77 -29.84 16 5 C -0.27 -14.03 9.63 84.03 0.81 -13.22 16 6 H 0.07 3.78 7.92 -2.91 -0.02 3.76 16 7 C -0.04 -2.28 4.82 84.86 0.41 -1.87 16 8 N -0.91 -52.22 9.61 21.65 0.21 -52.01 16 9 Si 0.95 44.79 29.61 68.60 2.03 46.82 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.18 7.08 5.80 85.64 0.50 7.58 16 14 C -0.08 -2.73 5.46 -19.85 -0.11 -2.84 16 15 C -0.11 -3.38 9.35 22.25 0.21 -3.18 16 16 C -0.10 -2.66 5.89 -19.77 -0.12 -2.78 16 17 C -0.11 -2.25 9.79 71.24 0.70 -1.56 16 18 C 0.07 1.91 5.67 22.51 0.13 2.04 16 19 O -0.33 -8.43 7.68 -73.37 -0.56 -8.99 16 20 C 0.07 1.10 6.65 71.24 0.47 1.57 16 21 C 0.49 8.86 8.40 71.24 0.60 9.46 16 22 O -0.54 -14.71 17.26 28.40 0.49 -14.22 16 23 O -0.50 -5.19 13.42 -51.37 -0.69 -5.88 16 24 C -0.10 -2.89 5.89 -19.77 -0.12 -3.01 16 25 C -0.11 -2.52 9.79 71.23 0.70 -1.82 16 26 C -0.11 -3.54 9.35 22.26 0.21 -3.33 16 27 H 0.22 7.88 7.80 -4.41 -0.03 7.84 16 28 H 0.06 3.20 6.59 -2.39 -0.02 3.18 16 29 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16 30 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.05 2.13 7.98 -2.39 -0.02 2.11 16 32 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 33 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.48 8.09 -2.39 -0.02 1.46 16 36 H 0.06 1.43 7.53 -2.38 -0.02 1.41 16 37 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.44 0.90 9.10 -74.05 -0.67 0.23 16 40 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.06 1.57 7.53 -2.39 -0.02 1.56 16 42 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 43 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -71.61 377.79 6.68 -64.93 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.35 Total: 16.22 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 6.63 Total: -17.03 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.56 Total: -81.85 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.76 Total: -29.09 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.61 6.68 -64.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588464743.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.107 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds