Wall clock time and date at job start Tue Mar 31 2020 11:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34972 * 119.99780 * 2 1 4 4 C 1.47144 * 120.00059 * 354.14966 * 3 2 1 5 5 C 1.39874 * 120.17611 * 318.52079 * 4 3 2 6 6 C 1.37872 * 119.82705 * 179.97438 * 5 4 3 7 7 C 1.38415 * 120.17527 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.82548 * 179.72052 * 7 6 5 9 9 C 1.38413 * 120.35087 * 359.97438 * 7 6 5 10 10 C 1.37877 * 120.17233 * 359.97438 * 9 7 6 11 11 C 1.46229 * 120.00198 * 180.02562 * 2 1 3 12 12 O 1.21756 * 119.99720 * 185.43919 * 11 2 1 13 13 N 1.34778 * 119.99801 * 5.43374 * 11 2 1 14 14 C 1.36716 * 119.99541 * 243.18005 * 13 11 2 15 15 H 1.08002 * 119.99297 * 200.68560 * 14 13 11 16 16 C 1.39124 * 120.00551 * 20.68640 * 14 13 11 17 17 N 1.31317 * 119.99800 * 13.51896 * 16 14 13 18 18 Si 1.86801 * 120.00210 * 193.51924 * 16 14 13 19 19 H 1.48496 * 109.46941 * 89.99653 * 18 16 14 20 20 H 1.48494 * 109.46966 * 210.00190 * 18 16 14 21 21 H 1.48495 * 109.46965 * 329.99837 * 18 16 14 22 22 C 1.46496 * 120.00080 * 63.18055 * 13 11 2 23 23 C 1.52990 * 109.47410 * 89.99929 * 22 13 11 24 24 C 1.50700 * 109.47671 * 180.02562 * 23 22 13 25 25 O 1.20831 * 119.99540 * 359.97438 * 24 23 22 26 26 O 1.34222 * 120.00630 * 179.97438 * 24 23 22 27 27 H 1.09004 * 109.47104 * 87.73148 * 1 2 3 28 28 H 1.08999 * 109.46856 * 207.72905 * 1 2 3 29 29 H 1.08998 * 109.47137 * 327.72463 * 1 2 3 30 30 H 1.08008 * 119.99967 * 174.14302 * 3 2 1 31 31 H 1.07997 * 120.08382 * 0.02562 * 5 4 3 32 32 H 1.08005 * 119.91623 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.46975 * 89.99866 * 8 7 6 34 34 H 1.08997 * 109.46894 * 209.99880 * 8 7 6 35 35 H 1.09001 * 109.46847 * 329.99896 * 8 7 6 36 36 H 1.07999 * 119.91480 * 180.02562 * 9 7 6 37 37 H 1.08003 * 120.08772 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00366 * 184.96632 * 17 16 14 39 39 H 1.09000 * 109.46990 * 210.00039 * 22 13 11 40 40 H 1.08997 * 109.47037 * 329.99199 * 22 13 11 41 41 H 1.09000 * 109.47133 * 300.00022 * 23 22 13 42 42 H 1.09004 * 109.47238 * 59.99598 * 23 22 13 43 43 H 0.96699 * 117.00299 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1689 0.0000 4 6 1.4518 2.4399 -0.1299 5 6 0.3912 2.5522 -1.0349 6 6 -0.2882 3.7463 -1.1503 7 6 0.0772 4.8325 -0.3740 8 6 -0.6668 6.1359 -0.5112 9 6 1.1255 4.7295 0.5238 10 6 1.8142 3.5419 0.6517 11 6 2.2382 -1.2664 -0.0006 12 8 3.4517 -1.2687 0.0994 13 7 1.5689 -2.4309 -0.1116 14 6 1.6044 -3.3397 0.9091 15 1 1.3705 -4.3765 0.7173 16 6 1.9418 -2.9290 2.1949 17 7 1.9664 -1.6497 2.4902 18 14 2.3597 -4.1973 3.5010 19 1 3.8186 -4.4733 3.4741 20 1 1.9792 -3.6749 4.8380 21 1 1.6135 -5.4521 3.2293 22 6 0.8033 -2.7228 -1.3260 23 6 1.7025 -3.4384 -2.3360 24 6 0.9152 -3.7382 -3.5856 25 8 -0.2462 -3.4132 -3.6604 26 8 1.5040 -4.3662 -4.6154 27 1 -0.3633 0.0407 -1.0269 28 1 -0.3633 -0.9097 0.4782 29 1 -0.3633 0.8689 0.5488 30 1 3.2577 1.1714 0.0955 31 1 0.1048 1.7055 -1.6409 32 1 -1.1076 3.8346 -1.8483 33 1 -1.5053 6.1506 0.1850 34 1 0.0061 6.9636 -0.2871 35 1 -1.0392 6.2361 -1.5307 36 1 1.4043 5.5813 1.1263 37 1 2.6317 3.4629 1.3531 38 1 2.2708 -1.3595 3.3643 39 1 -0.0436 -3.3621 -1.0767 40 1 0.4400 -1.7910 -1.7593 41 1 2.5494 -2.7992 -2.5853 42 1 2.0658 -4.3703 -1.9027 43 1 0.9586 -4.5364 -5.3956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588995957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:25 Heat of formation + Delta-G solvation = -77.296788 kcal Electronic energy + Delta-G solvation = -26372.159371 eV Core-core repulsion = 22576.054716 eV Total energy + Delta-G solvation = -3796.104655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.04428 -39.30950 -38.49928 -36.03167 -34.96146 -34.48643 -32.34906 -31.64958 -30.66785 -30.00862 -27.69917 -25.61027 -25.19302 -24.11486 -22.32014 -21.82937 -20.77422 -20.12496 -18.35933 -17.93845 -16.62706 -16.20749 -15.79944 -15.61942 -15.33481 -15.06417 -14.93980 -14.55578 -14.25769 -13.79713 -13.70245 -13.35836 -13.05338 -12.96733 -12.78125 -12.54691 -12.25537 -12.07662 -11.95193 -11.55033 -11.42261 -11.37227 -11.22784 -11.07547 -10.96850 -10.80064 -10.66634 -10.58937 -10.50661 -10.36066 -10.16489 -9.10846 -8.97369 -8.70777 -8.51813 -7.58655 -7.46166 -6.20289 -3.65776 1.23360 1.64794 2.43103 2.46701 3.23975 3.28415 3.34777 3.35222 4.00127 4.20234 4.40666 4.89984 4.97738 4.99453 5.18872 5.19330 5.33337 5.37879 5.44731 5.49436 5.56012 5.64814 5.78382 5.81892 5.83920 5.88833 5.98155 6.08898 6.17695 6.25230 6.27625 6.37214 6.50906 6.57867 6.62283 6.70558 6.75692 6.79011 6.88284 7.19131 7.29505 7.35622 7.51893 8.05687 8.09655 8.95200 9.23833 9.46232 9.94323 10.92065 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.004458 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.198521 B = 6279.282196 C = 8482.257062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.114 4.114 4 C -0.036 4.036 5 C -0.108 4.108 6 C -0.123 4.123 7 C -0.101 4.101 8 C -0.111 4.111 9 C -0.123 4.123 10 C -0.108 4.108 11 C 0.614 3.386 12 O -0.526 6.526 13 N -0.546 5.546 14 C -0.294 4.294 15 H 0.084 0.916 16 C 0.027 3.973 17 N -0.878 5.878 18 Si 0.919 3.081 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.146 3.854 23 C -0.135 4.135 24 C 0.484 3.516 25 O -0.521 6.521 26 O -0.522 6.522 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.269 0.731 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 7.689 -8.631 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.037 4.037 5 C -0.126 4.126 6 C -0.141 4.141 7 C -0.101 4.101 8 C -0.167 4.167 9 C -0.141 4.141 10 C -0.126 4.126 11 C 0.407 3.593 12 O -0.402 6.402 13 N -0.274 5.274 14 C -0.420 4.420 15 H 0.102 0.898 16 C -0.176 4.176 17 N -0.519 5.519 18 Si 0.747 3.253 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.020 3.980 23 C -0.174 4.174 24 C 0.326 3.674 25 O -0.409 6.409 26 O -0.333 6.333 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.908 7.964 -8.022 11.960 hybrid contribution -0.077 -0.757 0.440 0.879 sum -3.985 7.207 -7.581 11.194 Atomic orbital electron populations 1.20894 0.92036 1.03384 1.00233 1.22283 0.96153 0.93997 0.97082 1.21901 0.99386 0.89899 1.02143 1.19118 0.95196 0.93683 0.95663 1.21511 0.95134 0.97573 0.98358 1.20895 1.00236 0.92861 1.00067 1.19910 0.97028 0.95794 0.97364 1.20750 0.99713 0.94226 1.02037 1.20880 0.96469 0.97678 0.99026 1.21339 1.00048 0.92353 0.98838 1.17307 0.85456 0.83551 0.72947 1.90546 1.16607 1.88461 1.44589 1.42380 1.51040 1.18460 1.15490 1.19210 1.47280 0.90188 0.85359 0.89786 1.25093 0.98573 0.96457 0.97477 1.69296 1.45491 1.13702 1.23396 0.86038 0.78813 0.80308 0.80113 1.20753 1.21293 1.19918 1.20796 0.92520 0.99111 0.85583 1.22136 1.00436 1.04948 0.89926 1.23850 0.86291 0.72821 0.84408 1.90690 1.18473 1.50034 1.81732 1.84605 1.48742 1.72338 1.27625 0.92522 0.90186 0.92315 0.85619 0.85524 0.86400 0.91522 0.91909 0.91865 0.86489 0.85962 0.91911 0.90859 0.92045 0.88107 0.87233 0.73945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 6.87 36.01 0.25 -1.83 16 2 C -0.09 -1.96 5.37 -102.57 -0.55 -2.51 16 3 C -0.11 -2.26 9.32 -37.13 -0.35 -2.61 16 4 C -0.04 -0.62 5.03 -105.06 -0.53 -1.15 16 5 C -0.11 -1.63 7.85 -39.10 -0.31 -1.93 16 6 C -0.12 -1.61 9.68 -39.65 -0.38 -1.99 16 7 C -0.10 -1.26 5.89 -104.49 -0.62 -1.88 16 8 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 9 C -0.12 -1.62 9.67 -39.65 -0.38 -2.00 16 10 C -0.11 -1.65 9.80 -39.10 -0.38 -2.03 16 11 C 0.61 15.26 3.92 -13.05 -0.05 15.21 16 12 O -0.53 -14.75 16.76 5.14 0.09 -14.67 16 13 N -0.55 -12.91 1.89 -116.47 -0.22 -13.14 16 14 C -0.29 -7.56 9.61 -15.05 -0.14 -7.70 16 15 H 0.08 2.05 7.87 -52.49 -0.41 1.64 16 16 C 0.03 0.72 5.18 -17.44 -0.09 0.63 16 17 N -0.88 -24.43 11.04 55.50 0.61 -23.82 16 18 Si 0.92 21.11 29.58 -169.99 -5.03 16.09 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 22 C 0.15 2.80 4.28 -4.05 -0.02 2.78 16 23 C -0.13 -2.23 6.13 -27.89 -0.17 -2.40 16 24 C 0.48 7.21 8.33 36.01 0.30 7.51 16 25 O -0.52 -8.92 16.74 -18.75 -0.31 -9.23 16 26 O -0.52 -6.18 13.42 -39.24 -0.53 -6.71 16 27 H 0.06 0.93 6.19 -51.93 -0.32 0.60 16 28 H 0.08 1.70 7.46 -51.93 -0.39 1.31 16 29 H 0.06 1.08 6.62 -51.93 -0.34 0.74 16 30 H 0.13 2.63 7.53 -52.48 -0.40 2.24 16 31 H 0.13 1.83 5.95 -52.49 -0.31 1.52 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.40 8.00 -51.93 -0.42 0.98 16 40 H 0.06 1.12 6.27 -51.93 -0.33 0.80 16 41 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 42 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 43 H 0.40 2.85 9.10 45.56 0.41 3.26 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -32.51 365.76 -7.95 -40.46 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.01 Total: 8.08 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.06 Total: -2.57 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.39 Total: -36.95 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.75 Total: -30.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.51 -7.95 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588995957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.835 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds