Wall clock time and date at job start Tue Mar 31 2020 11:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34972 * 119.99780 * 2 1 4 4 C 1.47144 * 120.00059 * 354.14966 * 3 2 1 5 5 C 1.39874 * 120.17611 * 318.52079 * 4 3 2 6 6 C 1.37872 * 119.82705 * 179.97438 * 5 4 3 7 7 C 1.38415 * 120.17527 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.82548 * 179.72052 * 7 6 5 9 9 C 1.38413 * 120.35087 * 359.97438 * 7 6 5 10 10 C 1.37877 * 120.17233 * 359.97438 * 9 7 6 11 11 C 1.46229 * 120.00198 * 180.02562 * 2 1 3 12 12 O 1.21756 * 119.99720 * 185.43919 * 11 2 1 13 13 N 1.34778 * 119.99801 * 5.43374 * 11 2 1 14 14 C 1.36716 * 119.99541 * 243.18005 * 13 11 2 15 15 H 1.08002 * 119.99297 * 200.68560 * 14 13 11 16 16 C 1.39124 * 120.00551 * 20.68640 * 14 13 11 17 17 N 1.31317 * 119.99800 * 13.51896 * 16 14 13 18 18 Si 1.86801 * 120.00210 * 193.51924 * 16 14 13 19 19 H 1.48496 * 109.46941 * 89.99653 * 18 16 14 20 20 H 1.48494 * 109.46966 * 210.00190 * 18 16 14 21 21 H 1.48495 * 109.46965 * 329.99837 * 18 16 14 22 22 C 1.46496 * 120.00080 * 63.18055 * 13 11 2 23 23 C 1.52990 * 109.47410 * 89.99929 * 22 13 11 24 24 C 1.50700 * 109.47671 * 180.02562 * 23 22 13 25 25 O 1.20831 * 119.99540 * 359.97438 * 24 23 22 26 26 O 1.34222 * 120.00630 * 179.97438 * 24 23 22 27 27 H 1.09004 * 109.47104 * 87.73148 * 1 2 3 28 28 H 1.08999 * 109.46856 * 207.72905 * 1 2 3 29 29 H 1.08998 * 109.47137 * 327.72463 * 1 2 3 30 30 H 1.08008 * 119.99967 * 174.14302 * 3 2 1 31 31 H 1.07997 * 120.08382 * 0.02562 * 5 4 3 32 32 H 1.08005 * 119.91623 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.46975 * 89.99866 * 8 7 6 34 34 H 1.08997 * 109.46894 * 209.99880 * 8 7 6 35 35 H 1.09001 * 109.46847 * 329.99896 * 8 7 6 36 36 H 1.07999 * 119.91480 * 180.02562 * 9 7 6 37 37 H 1.08003 * 120.08772 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00366 * 184.96632 * 17 16 14 39 39 H 1.09000 * 109.46990 * 210.00039 * 22 13 11 40 40 H 1.08997 * 109.47037 * 329.99199 * 22 13 11 41 41 H 1.09000 * 109.47133 * 300.00022 * 23 22 13 42 42 H 1.09004 * 109.47238 * 59.99598 * 23 22 13 43 43 H 0.96699 * 117.00299 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1819 1.1689 0.0000 4 6 1.4518 2.4399 -0.1299 5 6 0.3912 2.5522 -1.0349 6 6 -0.2882 3.7463 -1.1503 7 6 0.0772 4.8325 -0.3740 8 6 -0.6668 6.1359 -0.5112 9 6 1.1255 4.7295 0.5238 10 6 1.8142 3.5419 0.6517 11 6 2.2382 -1.2664 -0.0006 12 8 3.4517 -1.2687 0.0994 13 7 1.5689 -2.4309 -0.1116 14 6 1.6044 -3.3397 0.9091 15 1 1.3705 -4.3765 0.7173 16 6 1.9418 -2.9290 2.1949 17 7 1.9664 -1.6497 2.4902 18 14 2.3597 -4.1973 3.5010 19 1 3.8186 -4.4733 3.4741 20 1 1.9792 -3.6749 4.8380 21 1 1.6135 -5.4521 3.2293 22 6 0.8033 -2.7228 -1.3260 23 6 1.7025 -3.4384 -2.3360 24 6 0.9152 -3.7382 -3.5856 25 8 -0.2462 -3.4132 -3.6604 26 8 1.5040 -4.3662 -4.6154 27 1 -0.3633 0.0407 -1.0269 28 1 -0.3633 -0.9097 0.4782 29 1 -0.3633 0.8689 0.5488 30 1 3.2577 1.1714 0.0955 31 1 0.1048 1.7055 -1.6409 32 1 -1.1076 3.8346 -1.8483 33 1 -1.5053 6.1506 0.1850 34 1 0.0061 6.9636 -0.2871 35 1 -1.0392 6.2361 -1.5307 36 1 1.4043 5.5813 1.1263 37 1 2.6317 3.4629 1.3531 38 1 2.2708 -1.3595 3.3643 39 1 -0.0436 -3.3621 -1.0767 40 1 0.4400 -1.7910 -1.7593 41 1 2.5494 -2.7992 -2.5853 42 1 2.0658 -4.3703 -1.9027 43 1 0.9586 -4.5364 -5.3956 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588995957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:24 Heat of formation + Delta-G solvation = -95.788642 kcal Electronic energy + Delta-G solvation = -26372.961238 eV Core-core repulsion = 22576.054716 eV Total energy + Delta-G solvation = -3796.906522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30204 -40.69786 -40.00900 -37.21280 -36.60679 -36.03109 -34.18132 -32.84840 -31.80592 -31.60641 -28.98274 -27.19240 -26.79454 -25.60022 -23.44581 -23.25628 -22.03603 -21.56472 -20.01580 -19.14679 -18.26905 -17.69608 -17.07254 -17.03670 -16.83242 -16.65508 -16.24912 -15.90942 -15.82836 -15.49877 -14.65900 -14.54474 -14.42636 -14.24538 -14.14706 -13.90319 -13.46504 -13.45182 -13.33008 -13.02216 -12.99808 -12.83708 -12.66164 -12.60093 -12.50109 -12.41773 -12.17207 -11.96818 -11.92463 -11.80378 -11.62403 -11.03418 -10.52493 -10.25736 -9.80431 -9.36625 -8.94373 -8.19398 -5.67261 -0.08448 0.55188 0.98162 1.22549 1.43090 1.47281 1.53941 2.07709 2.32056 2.56244 2.91108 3.22535 3.29848 3.92439 3.97638 4.00268 4.06166 4.11058 4.15167 4.24534 4.39010 4.52316 4.53785 4.57917 4.64729 4.78039 4.80892 4.89076 4.90744 4.97088 5.01313 5.12822 5.17747 5.22563 5.32235 5.43788 5.47549 5.54020 5.62968 5.72541 5.74573 5.83674 6.12335 6.15184 6.97909 7.04575 7.32815 7.60104 8.01278 8.90879 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009811 B = 0.004458 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.198521 B = 6279.282196 C = 8482.257062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.124 4.124 3 C -0.089 4.089 4 C -0.070 4.070 5 C -0.109 4.109 6 C -0.125 4.125 7 C -0.091 4.091 8 C -0.110 4.110 9 C -0.126 4.126 10 C -0.118 4.118 11 C 0.612 3.388 12 O -0.577 6.577 13 N -0.557 5.557 14 C -0.300 4.300 15 H 0.094 0.906 16 C -0.027 4.027 17 N -0.908 5.908 18 Si 0.979 3.021 19 H -0.291 1.291 20 H -0.289 1.289 21 H -0.255 1.255 22 C 0.147 3.853 23 C -0.130 4.130 24 C 0.500 3.500 25 O -0.543 6.543 26 O -0.512 6.512 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.261 0.739 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 8.957 -9.965 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.071 4.071 5 C -0.127 4.127 6 C -0.143 4.143 7 C -0.092 4.092 8 C -0.166 4.166 9 C -0.144 4.144 10 C -0.136 4.136 11 C 0.408 3.592 12 O -0.457 6.457 13 N -0.286 5.286 14 C -0.427 4.427 15 H 0.112 0.888 16 C -0.226 4.226 17 N -0.550 5.550 18 Si 0.805 3.195 19 H -0.219 1.219 20 H -0.215 1.215 21 H -0.178 1.178 22 C 0.022 3.978 23 C -0.169 4.169 24 C 0.343 3.657 25 O -0.434 6.434 26 O -0.325 6.325 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.161 0.839 37 H 0.137 0.863 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -5.703 9.199 -9.413 14.344 hybrid contribution 0.485 -1.025 0.720 1.343 sum -5.218 8.174 -8.693 13.023 Atomic orbital electron populations 1.20706 0.90171 1.02008 1.01496 1.22180 0.97335 0.92865 1.00436 1.21988 0.98582 0.91319 0.99030 1.19023 0.96971 0.92729 0.98335 1.21590 0.94525 0.98744 0.97855 1.21246 1.00516 0.92051 1.00460 1.20404 0.96086 0.97067 0.95596 1.20836 0.99943 0.92478 1.03392 1.21194 0.96292 0.97466 0.99406 1.21454 1.00470 0.92901 0.98808 1.17877 0.85092 0.84938 0.71252 1.90500 1.18673 1.89244 1.47276 1.42521 1.51481 1.18218 1.16350 1.19587 1.46269 0.91006 0.85867 0.88811 1.25924 0.99085 0.98038 0.99571 1.69450 1.47057 1.15278 1.23220 0.85104 0.77827 0.78962 0.77582 1.21851 1.21543 1.17839 1.20888 0.92632 0.99785 0.84495 1.21864 0.99865 1.04591 0.90591 1.23203 0.85397 0.72618 0.84443 1.90693 1.19255 1.51184 1.82239 1.84523 1.48837 1.71224 1.27949 0.90003 0.92868 0.91914 0.87877 0.85293 0.83521 0.90363 0.90530 0.90330 0.83897 0.86273 0.92861 0.90780 0.91288 0.88517 0.87141 0.71022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.38 6.87 71.24 0.49 -2.89 16 2 C -0.12 -5.57 5.37 -18.54 -0.10 -5.67 16 3 C -0.09 -3.72 9.32 23.86 0.22 -3.50 16 4 C -0.07 -2.40 5.03 -20.15 -0.10 -2.50 16 5 C -0.11 -3.16 7.85 22.58 0.18 -2.98 16 6 C -0.13 -2.90 9.68 22.23 0.22 -2.69 16 7 C -0.09 -1.98 5.89 -19.78 -0.12 -2.10 16 8 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 9 C -0.13 -3.03 9.67 22.23 0.22 -2.82 16 10 C -0.12 -3.59 9.80 22.58 0.22 -3.36 16 11 C 0.61 31.82 3.92 86.32 0.34 32.16 16 12 O -0.58 -34.23 16.76 -4.53 -0.08 -34.30 16 13 N -0.56 -27.18 1.89 -640.60 -1.21 -28.39 16 14 C -0.30 -15.77 9.61 84.14 0.81 -14.96 16 15 H 0.09 4.60 7.87 -2.91 -0.02 4.58 16 16 C -0.03 -1.48 5.18 84.98 0.44 -1.04 16 17 N -0.91 -52.60 11.04 21.69 0.24 -52.37 16 18 Si 0.98 44.32 29.58 68.60 2.03 46.35 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 22 C 0.15 5.68 4.28 86.38 0.37 6.05 16 23 C -0.13 -4.26 6.13 29.84 0.18 -4.08 16 24 C 0.50 14.17 8.33 71.24 0.59 14.76 16 25 O -0.54 -17.81 16.74 21.95 0.37 -17.44 16 26 O -0.51 -10.88 13.42 -51.34 -0.69 -11.57 16 27 H 0.08 2.64 6.19 -2.39 -0.01 2.62 16 28 H 0.05 2.32 7.46 -2.39 -0.02 2.30 16 29 H 0.06 2.32 6.62 -2.39 -0.02 2.31 16 30 H 0.10 4.66 7.53 -2.91 -0.02 4.64 16 31 H 0.13 3.58 5.95 -2.91 -0.02 3.56 16 32 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.08 0.90 8.08 -2.39 -0.02 0.89 16 36 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.07 2.83 8.00 -2.39 -0.02 2.81 16 40 H 0.07 2.54 6.27 -2.39 -0.01 2.52 16 41 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 43 H 0.43 4.74 9.10 -74.06 -0.67 4.06 16 Total: -1.00 -73.13 365.76 5.69 -67.44 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.36 Total: 26.74 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 4.67 Total: 3.55 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -0.97 Total: -80.76 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -0.40 Total: -63.31 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -73.13 5.69 -67.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588995957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.351 kcal (2) G-P(sol) polarization free energy of solvation -73.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds