Wall clock time and date at job start Tue Mar 31 2020 12:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.87088 * 2 1 4 4 O 1.20829 * 119.99561 * 23.99207 * 3 2 1 5 5 O 1.34221 * 120.00254 * 203.98575 * 3 2 1 6 6 C 1.54317 * 110.01502 * 121.10188 * 2 1 3 7 7 C 1.55161 * 102.94260 * 97.29643 * 6 2 1 8 8 C 1.54695 * 101.67440 * 35.33723 * 7 6 2 9 9 N 1.47023 * 109.87821 * 238.99277 * 2 1 3 10 10 C 1.34774 * 125.65352 * 59.32965 * 9 2 1 11 11 O 1.21283 * 119.99676 * 0.02562 * 10 9 2 12 12 C 1.50700 * 120.00134 * 179.97438 * 10 9 2 13 13 C 1.50695 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.37638 * 120.12570 * 265.01433 * 13 12 10 15 15 C 1.38614 * 120.24778 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50455 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24216 * 359.97438 * 16 15 14 18 18 C 1.40705 * 120.13050 * 85.00217 * 13 12 10 19 19 C 1.41397 * 120.24150 * 359.97438 * 18 13 12 20 20 H 1.08001 * 120.00041 * 334.08486 * 19 18 13 21 21 C 1.39942 * 119.99654 * 154.08657 * 19 18 13 22 22 N 1.30824 * 120.00311 * 343.65025 * 21 19 18 23 23 Si 1.86803 * 119.99853 * 163.65166 * 21 19 18 24 24 H 1.48501 * 109.46997 * 89.99683 * 23 21 19 25 25 H 1.48501 * 109.47187 * 209.99748 * 23 21 19 26 26 H 1.48501 * 109.47235 * 329.99860 * 23 21 19 27 27 H 1.09005 * 109.47119 * 181.01382 * 1 2 3 28 28 H 1.09001 * 109.46991 * 301.00892 * 1 2 3 29 29 H 1.08992 * 109.47440 * 61.01190 * 1 2 3 30 30 H 0.96698 * 117.00266 * 180.02562 * 5 3 2 31 31 H 1.08997 * 110.72589 * 215.65924 * 6 2 1 32 32 H 1.09004 * 110.71915 * 338.76088 * 6 2 1 33 33 H 1.08993 * 111.00472 * 153.57748 * 7 6 2 34 34 H 1.08999 * 111.00285 * 277.39095 * 7 6 2 35 35 H 1.09001 * 110.38880 * 204.36397 * 8 7 6 36 36 H 1.08997 * 110.23739 * 82.11380 * 8 7 6 37 37 H 1.08997 * 109.47532 * 59.99824 * 12 10 9 38 38 H 1.09000 * 109.46883 * 299.99735 * 12 10 9 39 39 H 1.07999 * 119.88095 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.75350 * 180.28439 * 15 14 13 41 41 H 1.08000 * 119.88066 * 179.97438 * 16 15 14 42 42 H 1.08004 * 120.11840 * 180.02562 * 17 16 15 43 43 H 0.96998 * 120.00158 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 8 1.3484 2.3104 0.4255 5 8 3.2691 1.6875 -0.4725 6 6 2.0582 -0.7490 1.2415 7 6 2.3576 -2.1680 0.6900 8 6 2.8554 -1.8497 -0.7396 9 7 2.0299 -0.7123 -1.1851 10 6 1.7717 -0.3833 -2.4663 11 8 1.0720 0.5750 -2.7171 12 6 2.3533 -1.2057 -3.5872 13 6 1.9167 -0.6314 -4.9103 14 6 0.8103 -1.1392 -5.5525 15 6 0.4062 -0.6125 -6.7693 16 6 1.1099 0.4296 -7.3537 17 6 2.2190 0.9528 -6.7296 18 6 2.6384 0.4262 -5.4938 19 6 3.7761 0.9565 -4.8429 20 1 3.8685 0.8806 -3.7695 21 6 4.7824 1.5796 -5.5895 22 7 4.8432 1.3996 -6.8839 23 14 6.0389 2.6684 -4.7379 24 1 7.2027 1.8468 -4.3189 25 1 6.4923 3.7274 -5.6751 26 1 5.4205 3.2966 -3.5429 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5294 0.8808 29 1 -0.3634 0.4980 -0.8988 30 1 3.5540 2.6114 -0.4516 31 1 2.9685 -0.2809 1.6161 32 1 1.2973 -0.7879 2.0211 33 1 3.1345 -2.6590 1.2759 34 1 1.4523 -2.7744 0.6596 35 1 2.7039 -2.7078 -1.3944 36 1 3.9084 -1.5689 -0.7184 37 1 2.0021 -2.2341 -3.5035 38 1 3.4413 -1.1871 -3.5248 39 1 0.2549 -1.9511 -5.1067 40 1 -0.4658 -1.0140 -7.2640 41 1 0.7863 0.8320 -8.3023 42 1 2.7654 1.7648 -7.1864 43 1 5.5409 1.8313 -7.4014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589185097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:36 Heat of formation + Delta-G solvation = -106.557104 kcal Electronic energy + Delta-G solvation = -27760.461236 eV Core-core repulsion = 23963.087758 eV Total energy + Delta-G solvation = -3797.373477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92546 -39.14179 -37.81047 -36.75483 -35.95169 -33.59427 -32.41436 -31.33721 -31.10408 -29.42180 -26.81179 -26.30455 -25.03502 -24.14774 -22.24575 -21.11507 -20.87597 -19.57073 -18.86050 -17.67672 -17.15439 -16.93114 -16.13396 -15.82189 -15.39872 -15.20945 -14.61122 -14.52700 -13.94198 -13.59737 -13.51701 -13.39141 -13.34407 -12.76304 -12.61068 -12.57616 -12.33002 -11.99274 -11.70057 -11.62987 -11.54052 -11.39326 -11.30426 -11.12544 -11.02441 -10.95412 -10.92793 -10.67418 -10.39279 -10.35370 -9.45898 -9.35544 -9.18030 -9.12394 -8.50591 -7.28994 -7.26520 -6.71298 -4.31098 2.26558 2.78707 2.93356 3.02358 3.07585 3.12433 3.28628 3.29895 3.39945 3.95601 4.23799 4.42331 4.62406 4.68754 4.89817 5.15007 5.31532 5.39917 5.45970 5.49751 5.59494 5.62618 5.72568 5.79004 5.80919 5.93697 6.01693 6.08151 6.26587 6.30088 6.44691 6.49896 6.53917 6.68339 6.82139 7.11941 7.32165 7.44833 7.65768 7.78811 7.95448 8.07092 8.10669 8.15897 8.34276 8.67435 8.76305 8.94709 9.04370 10.23012 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.005620 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.983938 B = 4981.220586 C = 6155.648018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.178 3.822 3 C 0.485 3.515 4 O -0.517 6.517 5 O -0.502 6.502 6 C -0.119 4.119 7 C -0.129 4.129 8 C 0.100 3.900 9 N -0.618 5.618 10 C 0.536 3.464 11 O -0.511 6.511 12 C -0.062 4.062 13 C -0.184 4.184 14 C -0.080 4.080 15 C -0.240 4.240 16 C -0.106 4.106 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.454 4.454 20 H 0.076 0.924 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.902 3.098 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.262 1.262 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.407 0.593 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -7.105 14.346 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.090 3.910 3 C 0.325 3.675 4 O -0.405 6.405 5 O -0.312 6.312 6 C -0.157 4.157 7 C -0.167 4.167 8 C -0.023 4.023 9 N -0.357 5.357 10 C 0.326 3.674 11 O -0.384 6.384 12 C -0.101 4.101 13 C -0.186 4.186 14 C -0.098 4.098 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.484 4.484 20 H 0.094 0.906 21 C -0.140 4.140 22 N -0.421 5.421 23 Si 0.727 3.273 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.186 1.186 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.743 -6.635 13.974 15.487 hybrid contribution 0.876 1.252 0.258 1.550 sum 0.133 -5.384 14.232 15.216 Atomic orbital electron populations 1.22049 0.90907 1.02932 1.04655 1.20762 0.95857 0.85805 0.88535 1.23730 0.78927 0.92190 0.72614 1.90676 1.57442 1.47918 1.44439 1.84568 1.33654 1.36278 1.76741 1.22705 1.02249 0.95724 0.95004 1.22762 1.02377 0.95887 0.95643 1.22301 0.95544 0.89294 0.95158 1.48823 1.52368 1.30376 1.04116 1.21131 0.79809 0.85271 0.81164 1.90700 1.37192 1.28026 1.82476 1.20231 1.02014 0.96979 0.90889 1.19048 1.01347 1.01611 0.96568 1.20290 0.95709 0.98575 0.95268 1.20294 1.03021 1.03796 0.98811 1.20678 0.96477 0.97207 0.98137 1.21287 0.96713 1.01960 0.97876 1.17340 0.90759 0.88068 0.91137 1.19488 1.02025 1.32046 0.94833 0.90621 1.25879 0.98506 0.95011 0.94643 1.69821 1.30391 1.34852 1.07055 0.86410 0.80307 0.80219 0.80371 1.19529 1.20200 1.18572 0.91038 0.90841 0.90077 0.73488 0.90018 0.88979 0.89294 0.90155 0.89860 0.90846 0.90606 0.88440 0.89801 0.89694 0.89616 0.86589 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 7.93 37.16 0.29 -1.76 16 2 C 0.18 2.50 0.79 -132.00 -0.10 2.39 16 3 C 0.48 8.14 6.29 36.01 0.23 8.36 16 4 O -0.52 -9.81 16.86 -18.75 -0.32 -10.12 16 5 O -0.50 -7.99 13.15 -39.23 -0.52 -8.51 16 6 C -0.12 -1.11 6.01 -24.90 -0.15 -1.26 16 7 C -0.13 -0.97 7.07 -24.70 -0.17 -1.14 16 8 C 0.10 1.06 6.68 -2.64 -0.02 1.04 16 9 N -0.62 -9.36 2.60 -157.20 -0.41 -9.77 16 10 C 0.54 10.58 7.05 -10.99 -0.08 10.50 16 11 O -0.51 -12.36 14.41 5.55 0.08 -12.28 16 12 C -0.06 -1.21 4.19 -29.04 -0.12 -1.33 16 13 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 14 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 15 C -0.24 -5.64 10.05 -39.29 -0.39 -6.03 16 16 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 17 C -0.16 -4.30 8.68 -38.87 -0.34 -4.63 16 18 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 19 C -0.45 -12.01 8.14 -37.74 -0.31 -12.32 16 20 H 0.08 1.97 6.67 -52.49 -0.35 1.62 16 21 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 22 N -0.80 -20.64 10.97 55.55 0.61 -20.03 16 23 Si 0.90 18.94 29.59 -169.99 -5.03 13.91 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 29 H 0.08 1.44 6.69 -51.93 -0.35 1.09 16 30 H 0.41 5.04 9.10 45.56 0.41 5.46 16 31 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 32 H 0.09 0.70 7.83 -51.93 -0.41 0.29 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 38 H 0.10 1.90 7.06 -51.93 -0.37 1.54 16 39 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 42 H 0.12 3.22 6.22 -52.48 -0.33 2.90 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -33.91 356.17 -8.38 -42.30 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.08 Total: 10.74 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.09 Total: -11.61 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 0.20 Total: -29.80 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.75 Total: -30.91 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.91 -8.38 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589185097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.261 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds