Wall clock time and date at job start Tue Mar 31 2020 12:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.87088 * 2 1 4 4 O 1.20829 * 119.99561 * 23.99207 * 3 2 1 5 5 O 1.34221 * 120.00254 * 203.98575 * 3 2 1 6 6 C 1.54317 * 110.01502 * 121.10188 * 2 1 3 7 7 C 1.55161 * 102.94260 * 97.29643 * 6 2 1 8 8 C 1.54695 * 101.67440 * 35.33723 * 7 6 2 9 9 N 1.47023 * 109.87821 * 238.99277 * 2 1 3 10 10 C 1.34774 * 125.65352 * 59.32965 * 9 2 1 11 11 O 1.21283 * 119.99676 * 0.02562 * 10 9 2 12 12 C 1.50700 * 120.00134 * 179.97438 * 10 9 2 13 13 C 1.50695 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.37638 * 120.12570 * 265.01433 * 13 12 10 15 15 C 1.38614 * 120.24778 * 179.97438 * 14 13 12 16 16 C 1.38660 * 120.50455 * 0.02562 * 15 14 13 17 17 C 1.37604 * 120.24216 * 359.97438 * 16 15 14 18 18 C 1.40705 * 120.13050 * 85.00217 * 13 12 10 19 19 C 1.41397 * 120.24150 * 359.97438 * 18 13 12 20 20 H 1.08001 * 120.00041 * 334.08486 * 19 18 13 21 21 C 1.39942 * 119.99654 * 154.08657 * 19 18 13 22 22 N 1.30824 * 120.00311 * 343.65025 * 21 19 18 23 23 Si 1.86803 * 119.99853 * 163.65166 * 21 19 18 24 24 H 1.48501 * 109.46997 * 89.99683 * 23 21 19 25 25 H 1.48501 * 109.47187 * 209.99748 * 23 21 19 26 26 H 1.48501 * 109.47235 * 329.99860 * 23 21 19 27 27 H 1.09005 * 109.47119 * 181.01382 * 1 2 3 28 28 H 1.09001 * 109.46991 * 301.00892 * 1 2 3 29 29 H 1.08992 * 109.47440 * 61.01190 * 1 2 3 30 30 H 0.96698 * 117.00266 * 180.02562 * 5 3 2 31 31 H 1.08997 * 110.72589 * 215.65924 * 6 2 1 32 32 H 1.09004 * 110.71915 * 338.76088 * 6 2 1 33 33 H 1.08993 * 111.00472 * 153.57748 * 7 6 2 34 34 H 1.08999 * 111.00285 * 277.39095 * 7 6 2 35 35 H 1.09001 * 110.38880 * 204.36397 * 8 7 6 36 36 H 1.08997 * 110.23739 * 82.11380 * 8 7 6 37 37 H 1.08997 * 109.47532 * 59.99824 * 12 10 9 38 38 H 1.09000 * 109.46883 * 299.99735 * 12 10 9 39 39 H 1.07999 * 119.88095 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.75350 * 180.28439 * 15 14 13 41 41 H 1.08000 * 119.88066 * 179.97438 * 16 15 14 42 42 H 1.08004 * 120.11840 * 180.02562 * 17 16 15 43 43 H 0.96998 * 120.00158 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 8 1.3484 2.3104 0.4255 5 8 3.2691 1.6875 -0.4725 6 6 2.0582 -0.7490 1.2415 7 6 2.3576 -2.1680 0.6900 8 6 2.8554 -1.8497 -0.7396 9 7 2.0299 -0.7123 -1.1851 10 6 1.7717 -0.3833 -2.4663 11 8 1.0720 0.5750 -2.7171 12 6 2.3533 -1.2057 -3.5872 13 6 1.9167 -0.6314 -4.9103 14 6 0.8103 -1.1392 -5.5525 15 6 0.4062 -0.6125 -6.7693 16 6 1.1099 0.4296 -7.3537 17 6 2.2190 0.9528 -6.7296 18 6 2.6384 0.4262 -5.4938 19 6 3.7761 0.9565 -4.8429 20 1 3.8685 0.8806 -3.7695 21 6 4.7824 1.5796 -5.5895 22 7 4.8432 1.3996 -6.8839 23 14 6.0389 2.6684 -4.7379 24 1 7.2027 1.8468 -4.3189 25 1 6.4923 3.7274 -5.6751 26 1 5.4205 3.2966 -3.5429 27 1 -0.3633 -1.0275 0.0182 28 1 -0.3633 0.5294 0.8808 29 1 -0.3634 0.4980 -0.8988 30 1 3.5540 2.6114 -0.4516 31 1 2.9685 -0.2809 1.6161 32 1 1.2973 -0.7879 2.0211 33 1 3.1345 -2.6590 1.2759 34 1 1.4523 -2.7744 0.6596 35 1 2.7039 -2.7078 -1.3944 36 1 3.9084 -1.5689 -0.7184 37 1 2.0021 -2.2341 -3.5035 38 1 3.4413 -1.1871 -3.5248 39 1 0.2549 -1.9511 -5.1067 40 1 -0.4658 -1.0140 -7.2640 41 1 0.7863 0.8320 -8.3023 42 1 2.7654 1.7648 -7.1864 43 1 5.5409 1.8313 -7.4014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589185097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:35 Heat of formation + Delta-G solvation = -127.914780 kcal Electronic energy + Delta-G solvation = -27761.387374 eV Core-core repulsion = 23963.087758 eV Total energy + Delta-G solvation = -3798.299616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13784 -40.57249 -39.39181 -38.23236 -37.27124 -35.50134 -33.86388 -32.58090 -32.26118 -31.33490 -28.50024 -27.30758 -26.89216 -25.31758 -23.32656 -22.82474 -22.29128 -21.06456 -20.20780 -19.08002 -18.98878 -18.29000 -17.30396 -17.18370 -16.95923 -16.49927 -16.25562 -16.07682 -15.52203 -15.18950 -15.00904 -14.49758 -14.40219 -14.36264 -13.96169 -13.60227 -13.50196 -13.42684 -13.36310 -12.99146 -12.89150 -12.75397 -12.73509 -12.67061 -12.62260 -12.49158 -12.14543 -12.07065 -11.68422 -11.53106 -11.32130 -11.21518 -11.02210 -10.73290 -9.73262 -9.22744 -9.16586 -8.59993 -6.28937 0.94405 1.02509 1.13530 1.33712 1.45284 1.52351 1.69619 1.95962 2.16641 2.19026 2.78113 3.35677 3.64359 3.69548 3.74236 4.09761 4.18811 4.23910 4.38389 4.40614 4.44685 4.53661 4.59468 4.70160 4.73470 4.77688 4.79786 4.85419 4.92648 5.04523 5.09271 5.17275 5.20014 5.32436 5.36357 5.40004 5.48143 5.54710 5.77484 6.03477 6.16872 6.21341 6.41999 6.51063 6.73995 6.83095 6.99439 7.11236 7.31966 8.36534 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.005620 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.983938 B = 4981.220586 C = 6155.648018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.168 3.832 3 C 0.477 3.523 4 O -0.549 6.549 5 O -0.509 6.509 6 C -0.112 4.112 7 C -0.112 4.112 8 C 0.084 3.916 9 N -0.611 5.611 10 C 0.535 3.465 11 O -0.569 6.569 12 C -0.058 4.058 13 C -0.189 4.189 14 C -0.090 4.090 15 C -0.243 4.243 16 C -0.118 4.118 17 C -0.195 4.195 18 C 0.095 3.905 19 C -0.478 4.478 20 H 0.070 0.930 21 C 0.036 3.964 22 N -0.827 5.827 23 Si 0.968 3.032 24 H -0.253 1.253 25 H -0.271 1.271 26 H -0.266 1.266 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.417 0.583 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -9.624 16.749 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.081 3.919 3 C 0.319 3.681 4 O -0.439 6.439 5 O -0.321 6.321 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.037 4.037 9 N -0.348 5.348 10 C 0.326 3.674 11 O -0.447 6.447 12 C -0.097 4.097 13 C -0.191 4.191 14 C -0.108 4.108 15 C -0.262 4.262 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.093 3.907 19 C -0.508 4.508 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.453 5.453 23 Si 0.790 3.210 24 H -0.177 1.177 25 H -0.195 1.195 26 H -0.190 1.190 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.277 0.723 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.113 0.887 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.337 -9.206 16.406 18.816 hybrid contribution 0.695 1.988 -0.498 2.164 sum 0.358 -7.218 15.908 17.473 Atomic orbital electron populations 1.22013 0.91001 1.04195 1.02785 1.21169 0.95922 0.84674 0.90132 1.24485 0.78637 0.93314 0.71644 1.90649 1.58104 1.49120 1.46037 1.84552 1.33601 1.37444 1.76485 1.22814 1.03026 0.96031 0.93105 1.22803 1.04051 0.94831 0.93237 1.22738 0.95136 0.88095 0.97694 1.48734 1.51757 1.31193 1.03087 1.20973 0.79231 0.84458 0.82724 1.90683 1.39920 1.30315 1.83748 1.20212 1.01833 0.98701 0.88989 1.19546 1.00900 1.00437 0.98168 1.20738 0.95554 0.99303 0.95189 1.20710 1.03478 1.02969 0.99016 1.20948 0.96017 0.97696 0.98936 1.21288 0.98235 1.02737 0.99144 1.17746 0.91824 0.89433 0.91675 1.19585 1.02819 1.33822 0.94592 0.91184 1.26660 1.00205 0.95762 0.95199 1.69882 1.31385 1.35705 1.08323 0.85411 0.78132 0.78484 0.79008 1.17735 1.19524 1.19007 0.88215 0.89912 0.94582 0.72253 0.89532 0.86539 0.85997 0.88557 0.88143 0.90592 0.86764 0.88685 0.86392 0.86695 0.87816 0.88718 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 7.93 71.98 0.57 -3.24 16 2 C 0.17 4.45 0.79 3.21 0.00 4.45 16 3 C 0.48 16.02 6.29 71.24 0.45 16.46 16 4 O -0.55 -21.26 16.86 21.95 0.37 -20.89 16 5 O -0.51 -16.30 13.15 -51.33 -0.67 -16.98 16 6 C -0.11 -1.66 6.01 31.78 0.19 -1.46 16 7 C -0.11 -1.10 7.07 31.91 0.23 -0.87 16 8 C 0.08 1.48 6.68 86.78 0.58 2.06 16 9 N -0.61 -17.46 2.60 -769.64 -2.00 -19.46 16 10 C 0.54 20.97 7.05 87.66 0.62 21.58 16 11 O -0.57 -28.35 14.41 -3.04 -0.04 -28.40 16 12 C -0.06 -2.22 4.19 29.10 0.12 -2.10 16 13 C -0.19 -9.15 4.43 -19.40 -0.09 -9.24 16 14 C -0.09 -4.06 9.66 22.22 0.21 -3.85 16 15 C -0.24 -11.20 10.05 22.46 0.23 -10.97 16 16 C -0.12 -5.92 10.02 22.22 0.22 -5.69 16 17 C -0.19 -10.99 8.68 22.73 0.20 -10.79 16 18 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 19 C -0.48 -26.23 8.14 23.46 0.19 -26.04 16 20 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 21 C 0.04 1.87 5.16 85.26 0.44 2.31 16 22 N -0.83 -44.44 10.97 21.83 0.24 -44.21 16 23 Si 0.97 39.57 29.59 68.60 2.03 41.60 16 24 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 25 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.08 2.01 7.86 -2.39 -0.02 1.99 16 29 H 0.03 1.30 6.69 -2.39 -0.02 1.28 16 30 H 0.42 10.64 9.10 -74.06 -0.67 9.96 16 31 H 0.09 1.24 7.84 -2.39 -0.02 1.22 16 32 H 0.12 1.21 7.83 -2.39 -0.02 1.19 16 33 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 1.44 7.48 -2.39 -0.02 1.43 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 3.38 7.75 -2.39 -0.02 3.36 16 38 H 0.10 3.67 7.06 -2.39 -0.02 3.66 16 39 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 41 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.09 5.61 6.22 -2.91 -0.02 5.59 16 43 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 Total: -1.00 -79.17 356.17 4.33 -74.84 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.37 Total: 35.67 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 4.05 Total: -22.18 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -1.76 Total: -63.66 kcal Atomic # 8 Polarization: -65.91 SS G_CDS: -0.35 Total: -66.26 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -79.17 4.33 -74.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589185097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.078 kcal (2) G-P(sol) polarization free energy of solvation -79.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds