Wall clock time and date at job start Tue Mar 31 2020 12:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38159 * 120.80206 * 2 1 4 4 C 1.39089 * 119.22262 * 180.26738 * 3 2 1 5 5 N 1.39324 * 119.57299 * 179.77241 * 4 3 2 6 6 C 1.34773 * 120.00513 * 185.10825 * 5 4 3 7 7 O 1.21583 * 119.99446 * 354.89821 * 6 5 4 8 8 N 1.34771 * 119.99954 * 174.62087 * 6 5 4 9 9 C 1.46505 * 119.99655 * 180.27583 * 8 6 5 10 10 C 1.52996 * 109.47112 * 180.02562 * 9 8 6 11 11 C 1.50696 * 109.47334 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99868 * 359.97438 * 11 10 9 13 13 C 1.37887 * 120.00128 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99666 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99683 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47185 * 90.00368 * 15 13 11 17 17 H 1.48506 * 109.46882 * 209.99723 * 15 13 11 18 18 H 1.48501 * 109.47640 * 329.99577 * 15 13 11 19 19 N 1.32420 * 120.86205 * 359.48742 * 4 3 2 20 20 C 1.31759 * 121.75390 * 0.26223 * 19 4 3 21 21 C 1.39201 * 120.68566 * 359.97438 * 20 19 4 22 22 C 1.48431 * 120.45948 * 179.97438 * 21 20 19 23 23 N 1.34059 * 126.67645 * 179.68885 * 22 21 20 24 24 N 1.28984 * 107.26977 * 179.86835 * 23 22 21 25 25 N 1.28732 * 108.94430 * 0.39621 * 24 23 22 26 26 H 0.97003 * 125.33714 * 179.74657 * 25 24 23 27 27 N 1.28870 * 109.32175 * 359.74957 * 25 24 23 28 28 H 1.08995 * 109.47189 * 270.23643 * 1 2 3 29 29 H 1.09002 * 109.47075 * 30.23493 * 1 2 3 30 30 H 1.08998 * 109.47235 * 150.23354 * 1 2 3 31 31 H 1.08007 * 120.38892 * 0.03177 * 3 2 1 32 32 H 0.97002 * 119.99295 * 5.10148 * 5 4 3 33 33 H 0.96991 * 120.00792 * 0.27711 * 8 6 5 34 34 H 1.09000 * 109.47407 * 299.99978 * 9 8 6 35 35 H 1.09000 * 109.47277 * 60.00072 * 9 8 6 36 36 H 1.08999 * 109.47262 * 299.99849 * 10 9 8 37 37 H 1.09000 * 109.47127 * 59.99813 * 10 9 8 38 38 H 0.97002 * 119.99503 * 179.97438 * 14 13 11 39 39 H 1.08007 * 119.65857 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2145 1.1867 0.0000 4 6 3.6049 1.1484 -0.0057 5 7 4.3256 2.3407 -0.0105 6 6 5.6687 2.3160 -0.1199 7 8 6.2589 1.2530 -0.1210 8 7 6.3568 3.4691 -0.2338 9 6 7.8163 3.4419 -0.3588 10 6 8.3453 4.8730 -0.4713 11 6 9.8466 4.8451 -0.5993 12 1 10.3710 3.9009 -0.5998 13 6 10.5507 6.0249 -0.7157 14 7 9.9121 7.1745 -0.7155 15 14 12.4116 5.9900 -0.8750 16 1 12.7842 5.9154 -2.3105 17 1 12.9826 7.2246 -0.2790 18 1 12.9474 4.8027 -0.1620 19 7 4.2526 -0.0066 -0.0009 20 6 3.6146 -1.1594 0.0043 21 6 2.2232 -1.2013 0.0054 22 6 1.5096 -2.5028 0.0106 23 7 0.1819 -2.6879 0.0180 24 7 -0.0272 -3.9607 0.0176 25 7 1.1065 -4.5705 0.0188 26 1 1.2258 -5.5332 0.0223 27 7 2.0581 -3.7015 0.0146 28 1 -0.3633 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6941 2.1331 0.0005 32 1 3.8607 3.1887 0.0648 33 1 5.8860 4.3171 -0.2330 34 1 8.2475 2.9636 0.5207 35 1 8.0942 2.8802 -1.2507 36 1 7.9143 5.3517 -1.3506 37 1 8.0675 5.4343 0.4208 38 1 10.4075 8.0045 -0.7970 39 1 4.1770 -2.0815 0.0077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592027460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:02 Heat of formation + Delta-G solvation = 115.647713 kcal Electronic energy + Delta-G solvation = -24549.305182 eV Core-core repulsion = 20722.612387 eV Total energy + Delta-G solvation = -3826.692795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.43087 -41.96177 -40.50727 -37.00846 -36.20373 -35.48606 -34.86554 -34.57032 -34.13059 -31.78383 -30.52176 -28.91726 -26.87528 -25.92377 -25.13918 -24.02539 -23.26619 -22.60455 -21.62087 -20.15546 -19.72743 -18.50720 -18.39800 -18.12228 -17.47863 -17.03755 -16.86583 -16.46379 -16.15539 -15.60077 -15.40691 -15.13232 -14.98419 -14.81371 -14.27650 -14.05424 -13.77726 -13.59592 -13.26811 -13.19562 -12.94658 -12.83586 -12.54722 -12.51326 -12.31947 -12.19036 -11.78499 -11.66515 -11.52298 -11.44469 -11.30540 -10.58374 -10.42307 -10.21319 -10.03265 -9.18470 -8.22521 -6.32043 -0.43544 0.16937 0.27698 1.24527 1.39359 1.43487 1.44153 1.47095 1.55676 2.12155 2.41934 2.65677 2.86866 3.04038 3.12506 3.15517 3.52614 3.72150 3.90090 4.16643 4.20925 4.43472 4.49740 4.54098 4.57908 4.76724 4.80918 4.88772 4.93530 5.00371 5.28520 5.34544 5.48863 5.52143 5.62154 5.64110 5.71930 5.78312 5.84302 6.18899 6.74787 6.81272 7.15048 7.19722 7.36861 7.56237 8.89188 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.037788 B = 0.001972 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.796134 B =14194.835301 C =14897.524300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.030 3.970 3 C -0.198 4.198 4 C 0.383 3.617 5 N -0.653 5.653 6 C 0.688 3.312 7 O -0.577 6.577 8 N -0.725 5.725 9 C 0.161 3.839 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.925 5.925 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.267 1.267 19 N -0.521 5.521 20 C 0.172 3.828 21 C -0.122 4.122 22 C 0.225 3.775 23 N -0.281 5.281 24 N -0.057 5.057 25 N -0.200 5.200 26 H 0.494 0.506 27 N -0.303 5.303 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.183 0.817 32 H 0.435 0.565 33 H 0.410 0.590 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.265 0.735 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.953 -17.767 1.921 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.021 3.979 3 C -0.221 4.221 4 C 0.151 3.849 5 N -0.303 5.303 6 C 0.387 3.613 7 O -0.452 6.452 8 N -0.381 5.381 9 C 0.037 3.963 10 C -0.014 4.014 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.192 4.192 14 N -0.564 5.564 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.192 1.192 19 N -0.236 5.236 20 C 0.011 3.989 21 C -0.130 4.130 22 C -0.055 4.055 23 N -0.153 5.153 24 N -0.052 5.052 25 N -0.051 5.051 26 H 0.353 0.647 27 N -0.155 5.155 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.201 0.799 32 H 0.276 0.724 33 H 0.246 0.754 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.904 -18.829 1.897 30.488 hybrid contribution 0.552 0.589 -0.040 0.808 sum -23.352 -18.240 1.857 29.690 Atomic orbital electron populations 1.21204 0.86981 1.05439 1.04418 1.20373 0.98357 0.89893 0.89320 1.21522 0.90343 1.01074 1.09189 1.18682 0.88657 0.85599 0.91938 1.42584 1.05173 1.08345 1.74193 1.16252 0.81847 0.84638 0.78570 1.91006 1.68427 1.30108 1.55633 1.45241 1.08146 1.07255 1.77480 1.21109 0.76773 0.98838 0.99589 1.19134 0.95213 0.90508 0.96533 1.21463 0.93052 0.93050 1.50848 0.92375 1.25845 1.03641 0.95077 0.94594 1.70051 1.37588 0.97990 1.50821 0.85465 0.79380 0.77774 0.78548 1.19842 1.20526 1.19183 1.67721 1.40392 0.97864 1.17620 1.22800 0.90211 0.95507 0.90412 1.18163 0.93137 0.88270 1.13439 1.23340 0.88097 0.92340 1.01710 1.76092 1.14141 1.05876 1.19238 1.78855 1.10808 1.00788 1.14725 1.47750 1.00209 1.13102 1.44039 0.64747 1.74942 1.18965 0.99172 1.22458 0.89174 0.88687 0.88952 0.79950 0.72446 0.75430 0.93695 0.93721 0.97067 0.97029 0.92577 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.28 71.24 0.66 -0.83 16 2 C 0.03 0.53 5.94 -19.49 -0.12 0.41 16 3 C -0.20 -3.31 9.62 22.46 0.22 -3.10 16 4 C 0.38 9.75 7.42 132.94 0.99 10.74 16 5 N -0.65 -15.95 5.39 -322.18 -1.74 -17.69 16 6 C 0.69 23.91 8.52 179.06 1.53 25.44 16 7 O -0.58 -25.59 14.59 -3.98 -0.06 -25.65 16 8 N -0.73 -24.65 5.56 -478.54 -2.66 -27.31 16 9 C 0.16 6.91 5.61 86.38 0.48 7.40 16 10 C 0.02 1.18 5.09 29.85 0.15 1.33 16 11 C -0.55 -30.35 9.11 25.60 0.23 -30.12 16 12 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 13 C 0.01 0.40 5.46 84.66 0.46 0.87 16 14 N -0.92 -53.71 13.29 21.45 0.28 -53.43 16 15 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 N -0.52 -16.48 7.86 -192.24 -1.51 -17.99 16 20 C 0.17 4.44 10.86 84.94 0.92 5.36 16 21 C -0.12 -2.61 5.89 -19.94 -0.12 -2.72 16 22 C 0.23 4.46 7.82 137.36 1.07 5.53 16 23 N -0.28 -5.22 9.23 -52.19 -0.48 -5.70 16 24 N -0.06 -0.87 13.47 37.02 0.50 -0.38 16 25 N -0.20 -2.19 7.90 37.02 0.29 -1.89 16 26 H 0.49 0.54 8.96 -347.53 -3.12 -2.58 16 27 N -0.30 -5.20 12.10 -52.14 -0.63 -5.84 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.09 1.36 5.31 -2.39 -0.01 1.34 16 31 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.44 6.40 8.71 -92.71 -0.81 5.60 16 33 H 0.41 11.22 8.49 -92.72 -0.79 10.43 16 34 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.17 3.96 7.89 -2.91 -0.02 3.93 16 Total: -1.00 -79.00 343.15 -1.05 -80.05 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.56 Total: 9.90 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.48 Total: 20.30 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -5.94 Total: -130.23 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.65 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -79.00 -1.05 -80.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592027460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.697 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds