Wall clock time and date at job start Tue Mar 31 2020 11:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00502 * 2 1 4 4 H 1.48498 * 109.47661 * 270.00516 * 3 2 1 5 5 H 1.48504 * 109.46791 * 30.00627 * 3 2 1 6 6 H 1.48501 * 109.47301 * 149.99942 * 3 2 1 7 7 C 1.37883 * 119.99399 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99320 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00294 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.53842 * 299.90501 * 9 7 2 11 11 C 1.53124 * 109.50139 * 60.00402 * 9 7 2 12 12 C 1.53126 * 109.15878 * 177.59632 * 11 9 7 13 13 C 1.53029 * 109.27795 * 302.34185 * 12 11 9 14 14 N 1.46854 * 109.52283 * 59.18140 * 13 12 11 15 15 C 1.39463 * 110.99974 * 174.15747 * 14 13 12 16 16 C 1.38799 * 120.11927 * 63.68101 * 15 14 13 17 17 C 1.38147 * 120.08739 * 179.73863 * 16 15 14 18 18 C 1.38365 * 120.34132 * 0.51450 * 17 16 15 19 19 C 1.38260 * 120.25251 * 359.76674 * 18 17 16 20 20 F 1.35098 * 120.04965 * 179.97438 * 19 18 17 21 21 C 1.39459 * 119.90164 * 359.97438 * 19 18 17 22 22 C 1.48350 * 120.16947 * 179.97438 * 21 19 18 23 23 N 1.34081 * 126.67666 * 180.02562 * 22 21 19 24 24 N 1.28986 * 107.26349 * 179.97438 * 23 22 21 25 25 N 1.28733 * 108.95375 * 359.97438 * 24 23 22 26 26 H 0.96998 * 125.33990 * 180.02562 * 25 24 23 27 27 N 1.28876 * 109.32729 * 359.76688 * 25 24 23 28 28 C 1.46843 * 111.19690 * 298.25524 * 14 13 12 29 29 H 0.96998 * 119.99547 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.52745 * 57.68960 * 11 9 7 31 31 H 1.08999 * 109.52030 * 297.49416 * 11 9 7 32 32 H 1.08994 * 109.50285 * 62.28827 * 12 11 9 33 33 H 1.08998 * 109.50137 * 182.36505 * 12 11 9 34 34 H 1.08999 * 109.46487 * 179.19278 * 13 12 11 35 35 H 1.09001 * 109.46656 * 299.16371 * 13 12 11 36 36 H 1.07994 * 119.95711 * 359.97438 * 16 15 14 37 37 H 1.08000 * 119.82939 * 180.25517 * 17 16 15 38 38 H 1.07999 * 119.87125 * 179.74169 * 18 17 16 39 39 H 1.09001 * 109.45906 * 181.75382 * 28 14 13 40 40 H 1.08994 * 109.46526 * 301.73687 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6525 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6254 -2.5590 0.8902 11 6 0.3699 -2.5807 -1.2503 12 6 -0.3459 -3.9342 -1.2731 13 6 0.6941 -5.0563 -1.2418 14 7 1.5108 -4.9348 -0.0274 15 6 2.3818 -6.0166 0.0995 16 6 3.3753 -6.2256 -0.8469 17 6 4.2412 -7.2943 -0.7176 18 6 4.1182 -8.1685 0.3478 19 6 3.1300 -7.9770 1.2955 20 9 3.0134 -8.8334 2.3338 21 6 2.2537 -6.8985 1.1781 22 6 1.1908 -6.6877 2.1913 23 7 0.2831 -5.7010 2.2064 24 7 -0.4558 -5.8765 3.2490 25 7 -0.0491 -6.9234 3.8782 26 1 -0.4372 -7.2726 4.6957 27 7 0.9509 -7.4377 3.2488 28 6 2.2446 -3.6630 -0.0061 29 1 -0.4849 0.8401 0.0004 30 1 0.9907 -2.4819 -2.1407 31 1 -0.3680 -1.7788 -1.2287 32 1 -0.9965 -4.0165 -0.4025 33 1 -0.9422 -4.0152 -2.1819 34 1 0.1873 -6.0214 -1.2434 35 1 1.3356 -4.9817 -2.1199 36 1 3.4741 -5.5497 -1.6833 37 1 5.0153 -7.4506 -1.4543 38 1 4.7966 -9.0039 0.4391 39 1 2.8639 -3.6160 0.8896 40 1 2.8787 -3.5947 -0.8900 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:38 Heat of formation + Delta-G solvation = 118.582911 kcal Electronic energy + Delta-G solvation = -26973.882092 eV Core-core repulsion = 23127.396615 eV Total energy + Delta-G solvation = -3846.485477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.85532 -44.07148 -39.89160 -37.34132 -34.16937 -33.68300 -33.31351 -31.85114 -30.29281 -29.85347 -28.77971 -24.90354 -24.54604 -24.40683 -23.45046 -21.64486 -21.46887 -21.05761 -18.94717 -18.55439 -17.57056 -16.81509 -16.55377 -16.12454 -16.10119 -15.54676 -15.11776 -14.51940 -14.33883 -14.07824 -13.78648 -13.55314 -13.19658 -12.68568 -12.50988 -12.38370 -12.03328 -12.00560 -11.91237 -11.68838 -11.37348 -10.99168 -10.91465 -10.77656 -10.69654 -10.66724 -10.63415 -10.06544 -9.82136 -9.44215 -9.07584 -8.74093 -8.62145 -8.51841 -8.24952 -7.77535 -5.91615 -3.97669 0.69294 1.11276 1.51021 2.50106 2.60179 3.33885 3.40940 3.43737 3.60307 3.85215 3.96094 4.40139 4.44186 4.53196 4.87441 5.10681 5.21934 5.32420 5.38533 5.50312 5.73698 5.74965 5.80919 5.93076 6.02641 6.07305 6.16499 6.21848 6.34484 6.45926 6.53161 6.63422 6.69664 6.78803 6.80782 7.03222 7.27227 7.47447 7.60804 7.81564 7.91318 8.18171 8.25442 8.52909 8.55660 9.06422 9.66079 11.14186 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.004438 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.751931 B = 6308.133518 C = 7072.499655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.058 3.942 10 H 0.041 0.959 11 C -0.109 4.109 12 C -0.115 4.115 13 C 0.075 3.925 14 N -0.494 5.494 15 C 0.178 3.822 16 C -0.166 4.166 17 C -0.064 4.064 18 C -0.172 4.172 19 C 0.137 3.863 20 F -0.124 7.124 21 C -0.041 4.041 22 C 0.217 3.783 23 N -0.196 5.196 24 N -0.064 5.064 25 N -0.241 5.241 26 H 0.469 0.531 27 N -0.297 5.297 28 C 0.078 3.922 29 H 0.259 0.741 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.058 0.942 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -17.472 1.264 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.060 0.940 11 C -0.148 4.148 12 C -0.153 4.153 13 C -0.050 4.050 14 N -0.216 5.216 15 C 0.080 3.920 16 C -0.186 4.186 17 C -0.083 4.083 18 C -0.191 4.191 19 C 0.115 3.885 20 F -0.102 7.102 21 C -0.047 4.047 22 C -0.062 4.062 23 N -0.069 5.069 24 N -0.059 5.059 25 N -0.085 5.085 26 H 0.322 0.678 27 N -0.150 5.150 28 C -0.046 4.046 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.077 0.923 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.781 -17.021 1.981 17.361 hybrid contribution 1.179 0.317 -0.103 1.225 sum 3.960 -16.705 1.878 17.270 Atomic orbital electron populations 1.69897 1.05769 1.26210 1.50566 1.24905 0.94785 0.98790 0.95208 0.86665 0.79908 0.83853 0.77953 1.20824 1.21305 1.20057 1.21123 0.92739 0.90678 1.50781 0.92964 1.18650 0.92498 0.89628 0.95300 0.94049 1.21653 1.00045 0.94759 0.98295 1.21662 0.97087 0.96025 1.00544 1.22034 0.95263 0.99279 0.88467 1.59575 1.22229 1.00490 1.39280 1.18785 0.91322 0.91227 0.90654 1.21878 0.96666 0.99344 1.00720 1.21004 0.97820 0.93021 0.96467 1.20988 0.99659 1.02758 0.95665 1.17459 0.96101 0.88535 0.86421 1.91544 1.95254 1.67891 1.55510 1.17258 0.95176 0.97259 0.94985 1.23149 0.98210 0.91016 0.93831 1.76673 1.02376 1.18540 1.09281 1.79116 1.20420 1.03816 1.02559 1.47770 1.20385 1.17906 1.22455 0.67775 1.75009 1.06677 1.24545 1.08758 1.22389 0.96350 0.87022 0.98875 0.93110 0.95255 0.89030 0.91424 0.93475 0.92496 0.95340 0.84629 0.84757 0.84340 0.92348 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 11.35 55.43 0.63 -24.65 16 2 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 10 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.11 -2.54 5.02 -26.60 -0.13 -2.68 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.41 16 13 C 0.08 1.31 5.16 -3.83 -0.02 1.29 16 14 N -0.49 -9.13 2.82 -170.94 -0.48 -9.61 16 15 C 0.18 2.85 4.68 -83.55 -0.39 2.46 16 16 C -0.17 -2.17 8.68 -39.41 -0.34 -2.52 16 17 C -0.06 -0.66 10.03 -39.57 -0.40 -1.06 16 18 C -0.17 -1.85 10.01 -39.53 -0.40 -2.25 16 19 C 0.14 1.87 7.27 -39.12 -0.28 1.59 16 20 F -0.12 -1.73 15.83 2.25 0.04 -1.70 16 21 C -0.04 -0.66 5.90 -104.65 -0.62 -1.28 16 22 C 0.22 3.73 7.89 -156.29 -1.23 2.50 16 23 N -0.20 -3.69 10.93 32.14 0.35 -3.34 16 24 N -0.06 -1.03 13.47 60.35 0.81 -0.22 16 25 N -0.24 -3.02 7.90 60.35 0.48 -2.55 16 26 H 0.47 3.37 8.96 -340.35 -3.05 0.32 16 27 N -0.30 -4.45 11.10 32.16 0.36 -4.10 16 28 C 0.08 1.64 4.34 -3.83 -0.02 1.63 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 32 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.03 0.46 7.52 -51.93 -0.39 0.07 16 36 H 0.14 1.71 7.12 -52.49 -0.37 1.33 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 40 H 0.02 0.50 7.35 -51.93 -0.38 0.11 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -31.40 333.52 -9.84 -41.24 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.44 Total: -2.25 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -4.59 Total: -14.10 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 2.14 Total: -44.47 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.40 -9.84 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.825 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds