Wall clock time and date at job start Tue Mar 31 2020 11:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48505 * 109.46843 * 270.00292 * 3 2 1 5 5 H 1.48498 * 109.46692 * 30.00156 * 3 2 1 6 6 H 1.48498 * 109.46840 * 150.00551 * 3 2 1 7 7 C 1.37879 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99687 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53748 * 305.28218 * 9 7 2 11 11 C 1.53120 * 109.50316 * 65.37970 * 9 7 2 12 12 C 1.53118 * 109.15885 * 177.59009 * 11 9 7 13 13 C 1.53039 * 109.28315 * 302.34886 * 12 11 9 14 14 N 1.46843 * 109.52460 * 59.17552 * 13 12 11 15 15 C 1.39600 * 111.00240 * 174.16051 * 14 13 12 16 16 C 1.38762 * 120.10701 * 64.03724 * 15 14 13 17 17 C 1.38134 * 120.06657 * 179.97438 * 16 15 14 18 18 C 1.38595 * 120.28897 * 0.02562 * 17 16 15 19 19 F 1.35102 * 119.88601 * 180.02562 * 18 17 16 20 20 C 1.38202 * 120.22671 * 0.02682 * 18 17 16 21 21 C 1.39262 * 119.92697 * 359.67817 * 20 18 17 22 22 C 1.48372 * 120.14371 * 180.30046 * 21 20 18 23 23 N 1.34073 * 126.67727 * 185.49009 * 22 21 20 24 24 N 1.28984 * 107.26412 * 179.97438 * 23 22 21 25 25 N 1.28731 * 108.95607 * 0.02562 * 24 23 22 26 26 H 0.96994 * 125.34049 * 179.97438 * 25 24 23 27 27 N 1.28878 * 109.31970 * 359.76117 * 25 24 23 28 28 C 1.46845 * 111.20130 * 298.26383 * 14 13 12 29 29 H 0.96996 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.52384 * 297.49731 * 11 9 7 31 31 H 1.09003 * 109.52267 * 57.69146 * 11 9 7 32 32 H 1.08998 * 109.50258 * 62.28942 * 12 11 9 33 33 H 1.09005 * 109.50179 * 182.36131 * 12 11 9 34 34 H 1.08998 * 109.46534 * 179.19795 * 13 12 11 35 35 H 1.09006 * 109.45740 * 299.16201 * 13 12 11 36 36 H 1.07998 * 119.96656 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.85821 * 180.02562 * 17 16 15 38 38 H 1.07994 * 120.03380 * 179.97438 * 20 18 17 39 39 H 1.09010 * 109.45944 * 301.72529 * 28 14 13 40 40 H 1.09000 * 109.46555 * 181.75453 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5553 -2.5183 0.8383 11 6 0.4743 -2.6409 -1.3124 12 6 -0.2397 -3.9953 -1.3298 13 6 0.7923 -5.1128 -1.1615 14 7 1.5080 -4.9328 0.1080 15 6 2.3647 -6.0068 0.3560 16 6 3.4354 -6.2532 -0.4916 17 6 4.2829 -7.3158 -0.2451 18 6 4.0695 -8.1412 0.8476 19 9 4.9038 -9.1779 1.0813 20 6 3.0062 -7.9075 1.6990 21 6 2.1497 -6.8351 1.4627 22 6 1.0106 -6.5758 2.3774 23 7 0.0517 -5.6520 2.2204 24 7 -0.7453 -5.7523 3.2295 25 7 -0.3254 -6.6923 4.0023 26 1 -0.7478 -6.9683 4.8307 27 7 0.7418 -7.2121 3.5004 28 6 2.2399 -3.6600 0.1292 29 1 -0.4850 0.8400 0.0004 30 1 -0.2614 -1.8403 -1.3884 31 1 1.1655 -2.5827 -2.1532 32 1 -0.9589 -4.0381 -0.5119 33 1 -0.7605 -4.1200 -2.2792 34 1 0.2856 -6.0778 -1.1592 35 1 1.5031 -5.0780 -1.9873 36 1 3.6063 -5.6136 -1.3449 37 1 5.1154 -7.5043 -0.9068 38 1 2.8426 -8.5528 2.5493 39 1 2.9440 -3.6320 -0.7026 40 1 2.7846 -3.5698 1.0690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:43 Heat of formation + Delta-G solvation = 114.139059 kcal Electronic energy + Delta-G solvation = -26705.149521 eV Core-core repulsion = 22858.471345 eV Total energy + Delta-G solvation = -3846.678176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.93175 -44.15278 -39.92100 -37.36110 -34.13511 -33.67965 -33.40222 -31.84968 -30.67050 -29.85395 -28.47243 -24.89506 -24.73666 -24.36275 -23.48377 -21.85253 -21.44943 -20.99497 -19.08666 -18.54908 -17.55796 -16.86273 -16.85262 -16.31855 -15.75873 -15.63253 -14.95590 -14.57752 -14.11676 -14.01148 -13.89570 -13.70581 -13.27577 -12.93939 -12.69127 -12.41895 -12.18088 -12.04109 -11.91094 -11.61931 -11.39015 -11.01812 -10.91835 -10.76089 -10.72232 -10.71518 -10.65211 -10.09329 -9.83793 -9.43832 -9.07243 -8.94734 -8.71990 -8.36047 -8.26026 -7.77578 -5.93497 -3.98332 0.65032 1.08592 1.44940 2.42795 2.53349 3.33439 3.40517 3.43254 3.58872 3.76546 4.16124 4.23365 4.48580 4.52353 4.81738 4.94366 5.26157 5.34525 5.38007 5.50916 5.68994 5.75572 5.80235 5.81486 5.99882 6.08044 6.09223 6.18528 6.32456 6.45550 6.52032 6.57798 6.66284 6.76361 6.79033 7.01248 7.25817 7.44365 7.59890 7.80671 7.90986 8.12827 8.21371 8.49279 8.51676 9.06650 9.65438 11.13989 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.004411 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.973447 B = 6346.686705 C = 7325.802381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.058 3.942 10 H 0.044 0.956 11 C -0.106 4.106 12 C -0.115 4.115 13 C 0.076 3.924 14 N -0.492 5.492 15 C 0.141 3.859 16 C -0.125 4.125 17 C -0.124 4.124 18 C 0.082 3.918 19 F -0.140 7.140 20 C -0.113 4.113 21 C 0.024 3.976 22 C 0.220 3.780 23 N -0.196 5.196 24 N -0.061 5.061 25 N -0.240 5.240 26 H 0.470 0.530 27 N -0.306 5.306 28 C 0.076 3.924 29 H 0.259 0.741 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.023 0.977 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 -17.006 2.951 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.062 0.938 11 C -0.144 4.144 12 C -0.153 4.153 13 C -0.050 4.050 14 N -0.213 5.213 15 C 0.043 3.957 16 C -0.146 4.146 17 C -0.145 4.145 18 C 0.062 3.938 19 F -0.119 7.119 20 C -0.135 4.135 21 C 0.019 3.981 22 C -0.060 4.060 23 N -0.069 5.069 24 N -0.057 5.057 25 N -0.083 5.083 26 H 0.323 0.677 27 N -0.159 5.159 28 C -0.049 4.049 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.041 0.959 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.536 -16.547 3.529 16.989 hybrid contribution 1.419 0.339 -0.136 1.465 sum 2.955 -16.208 3.393 16.821 Atomic orbital electron populations 1.69932 1.05762 1.26281 1.50393 1.24911 0.94771 0.98776 0.95185 0.86685 0.79922 0.83916 0.77980 1.20806 1.21308 1.20055 1.21111 0.92714 0.90669 1.50928 0.92996 1.18650 0.93044 0.89651 0.94739 0.93756 1.21613 0.99534 0.94510 0.98783 1.21655 0.97513 0.95955 1.00193 1.22021 0.96102 0.99169 0.87754 1.59659 1.26708 1.00367 1.34604 1.19049 0.91907 0.92501 0.92232 1.21665 0.94878 0.97462 1.00564 1.21153 1.00944 0.95337 0.97031 1.17357 0.91147 0.88041 0.97220 1.91494 1.70081 1.55948 1.94386 1.20958 0.94025 0.98204 1.00305 1.16926 0.92021 0.95908 0.93238 1.23250 0.97608 0.93015 0.92127 1.76671 1.00743 1.16745 1.12695 1.79140 1.21013 1.06808 0.98696 1.47731 1.16706 1.22544 1.21360 0.67703 1.74824 1.04651 1.24194 1.12201 1.22410 0.96146 0.87233 0.99068 0.93108 0.89968 0.95171 0.91299 0.93499 0.92382 0.95478 0.84249 0.84529 0.83797 0.95856 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 11.75 55.43 0.65 -24.62 16 2 C 0.07 1.80 5.33 -17.82 -0.09 1.70 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -13.95 8.50 -34.44 -0.29 -14.24 16 8 H 0.05 1.39 7.75 -52.49 -0.41 0.98 16 9 C 0.06 1.42 2.17 -91.69 -0.20 1.23 16 10 H 0.04 1.25 8.14 -51.93 -0.42 0.82 16 11 C -0.11 -2.43 5.08 -26.61 -0.14 -2.57 16 12 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 13 C 0.08 1.28 5.17 -3.84 -0.02 1.26 16 14 N -0.49 -8.86 2.83 -170.90 -0.48 -9.35 16 15 C 0.14 2.19 4.68 -83.51 -0.39 1.80 16 16 C -0.13 -1.65 8.69 -39.43 -0.34 -2.00 16 17 C -0.12 -1.42 10.01 -39.49 -0.40 -1.82 16 18 C 0.08 0.99 7.29 -39.46 -0.29 0.70 16 19 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 20 C -0.11 -1.43 9.67 -39.21 -0.38 -1.81 16 21 C 0.02 0.35 5.89 -104.72 -0.62 -0.27 16 22 C 0.22 3.48 7.89 -156.30 -1.23 2.24 16 23 N -0.20 -3.50 10.95 32.14 0.35 -3.15 16 24 N -0.06 -0.94 13.47 60.35 0.81 -0.12 16 25 N -0.24 -2.72 7.90 60.35 0.48 -2.25 16 26 H 0.47 2.86 8.96 -340.36 -3.05 -0.19 16 27 N -0.31 -4.08 12.10 32.16 0.39 -3.69 16 28 C 0.08 1.58 4.34 -3.83 -0.02 1.56 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.08 2.13 6.58 -51.93 -0.34 1.79 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 35 H 0.03 0.43 7.54 -51.93 -0.39 0.04 16 36 H 0.14 1.75 7.12 -52.49 -0.37 1.38 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.61 7.89 -52.49 -0.41 1.20 16 39 H 0.02 0.47 7.34 -51.92 -0.38 0.08 16 40 H 0.06 1.26 8.11 -51.93 -0.42 0.84 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -30.66 336.23 -9.73 -40.39 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.45 Total: -2.25 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -4.57 Total: -14.58 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 2.20 Total: -43.17 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.66 -9.73 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.530 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds