Wall clock time and date at job start Tue Mar 31 2020 11:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48505 * 109.46843 * 270.00292 * 3 2 1 5 5 H 1.48498 * 109.46692 * 30.00156 * 3 2 1 6 6 H 1.48498 * 109.46840 * 150.00551 * 3 2 1 7 7 C 1.37879 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99687 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99983 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53748 * 305.28218 * 9 7 2 11 11 C 1.53120 * 109.50316 * 65.37970 * 9 7 2 12 12 C 1.53118 * 109.15885 * 177.59009 * 11 9 7 13 13 C 1.53039 * 109.28315 * 302.34886 * 12 11 9 14 14 N 1.46843 * 109.52460 * 59.17552 * 13 12 11 15 15 C 1.39600 * 111.00240 * 174.16051 * 14 13 12 16 16 C 1.38762 * 120.10701 * 64.03724 * 15 14 13 17 17 C 1.38134 * 120.06657 * 179.97438 * 16 15 14 18 18 C 1.38595 * 120.28897 * 0.02562 * 17 16 15 19 19 F 1.35102 * 119.88601 * 180.02562 * 18 17 16 20 20 C 1.38202 * 120.22671 * 0.02682 * 18 17 16 21 21 C 1.39262 * 119.92697 * 359.67817 * 20 18 17 22 22 C 1.48372 * 120.14371 * 180.30046 * 21 20 18 23 23 N 1.34073 * 126.67727 * 185.49009 * 22 21 20 24 24 N 1.28984 * 107.26412 * 179.97438 * 23 22 21 25 25 N 1.28731 * 108.95607 * 0.02562 * 24 23 22 26 26 H 0.96994 * 125.34049 * 179.97438 * 25 24 23 27 27 N 1.28878 * 109.31970 * 359.76117 * 25 24 23 28 28 C 1.46845 * 111.20130 * 298.26383 * 14 13 12 29 29 H 0.96996 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.52384 * 297.49731 * 11 9 7 31 31 H 1.09003 * 109.52267 * 57.69146 * 11 9 7 32 32 H 1.08998 * 109.50258 * 62.28942 * 12 11 9 33 33 H 1.09005 * 109.50179 * 182.36131 * 12 11 9 34 34 H 1.08998 * 109.46534 * 179.19795 * 13 12 11 35 35 H 1.09006 * 109.45740 * 299.16201 * 13 12 11 36 36 H 1.07998 * 119.96656 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.85821 * 180.02562 * 17 16 15 38 38 H 1.07994 * 120.03380 * 179.97438 * 20 18 17 39 39 H 1.09010 * 109.45944 * 301.72529 * 28 14 13 40 40 H 1.09000 * 109.46555 * 181.75453 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5553 -2.5183 0.8383 11 6 0.4743 -2.6409 -1.3124 12 6 -0.2397 -3.9953 -1.3298 13 6 0.7923 -5.1128 -1.1615 14 7 1.5080 -4.9328 0.1080 15 6 2.3647 -6.0068 0.3560 16 6 3.4354 -6.2532 -0.4916 17 6 4.2829 -7.3158 -0.2451 18 6 4.0695 -8.1412 0.8476 19 9 4.9038 -9.1779 1.0813 20 6 3.0062 -7.9075 1.6990 21 6 2.1497 -6.8351 1.4627 22 6 1.0106 -6.5758 2.3774 23 7 0.0517 -5.6520 2.2204 24 7 -0.7453 -5.7523 3.2295 25 7 -0.3254 -6.6923 4.0023 26 1 -0.7478 -6.9683 4.8307 27 7 0.7418 -7.2121 3.5004 28 6 2.2399 -3.6600 0.1292 29 1 -0.4850 0.8400 0.0004 30 1 -0.2614 -1.8403 -1.3884 31 1 1.1655 -2.5827 -2.1532 32 1 -0.9589 -4.0381 -0.5119 33 1 -0.7605 -4.1200 -2.2792 34 1 0.2856 -6.0778 -1.1592 35 1 1.5031 -5.0780 -1.9873 36 1 3.6063 -5.6136 -1.3449 37 1 5.1154 -7.5043 -0.9068 38 1 2.8426 -8.5528 2.5493 39 1 2.9440 -3.6320 -0.7026 40 1 2.7846 -3.5698 1.0690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592673871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:42 Heat of formation + Delta-G solvation = 96.000467 kcal Electronic energy + Delta-G solvation = -26705.936069 eV Core-core repulsion = 22858.471345 eV Total energy + Delta-G solvation = -3847.464725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.88051 -45.27394 -41.13497 -38.74967 -35.49236 -35.20907 -34.50834 -33.54844 -31.70274 -31.63150 -29.70578 -26.86510 -25.79782 -25.59258 -24.80228 -23.17446 -22.95541 -22.22451 -20.26165 -20.11973 -18.68312 -18.42678 -17.97378 -17.44314 -17.32884 -16.59761 -16.49376 -15.94608 -15.62679 -15.36489 -15.10233 -14.78712 -14.61966 -14.46697 -14.27193 -13.92346 -13.59778 -13.38384 -13.19256 -12.97256 -12.81203 -12.61457 -12.52314 -12.38112 -12.16914 -11.90462 -11.84266 -11.81430 -11.62856 -11.32333 -10.84350 -10.65912 -10.33501 -9.95881 -9.46147 -9.14043 -8.03958 -6.16186 -0.38273 0.06553 0.33326 1.40171 1.42989 1.43890 1.53575 1.55070 2.45484 2.54701 2.70881 2.92847 3.16066 3.25234 3.46569 3.91923 3.93097 4.14658 4.23716 4.28946 4.34276 4.45580 4.53721 4.63742 4.66708 4.77530 4.81079 4.92730 5.00677 5.02005 5.09109 5.11547 5.24845 5.39287 5.50287 5.57033 5.68757 5.71309 5.74803 6.02237 6.18017 6.22066 6.49624 6.59663 6.98080 7.35154 7.51208 9.02573 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.004411 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.973447 B = 6346.686705 C = 7325.802381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.059 3.941 10 H -0.004 1.004 11 C -0.097 4.097 12 C -0.106 4.106 13 C 0.081 3.919 14 N -0.500 5.500 15 C 0.116 3.884 16 C -0.123 4.123 17 C -0.109 4.109 18 C 0.087 3.913 19 F -0.137 7.137 20 C -0.107 4.107 21 C 0.011 3.989 22 C 0.206 3.794 23 N -0.241 5.241 24 N -0.080 5.080 25 N -0.207 5.207 26 H 0.491 0.509 27 N -0.294 5.294 28 C 0.095 3.905 29 H 0.258 0.742 30 H 0.045 0.955 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.033 0.967 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -18.842 2.516 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.040 3.960 10 H 0.014 0.986 11 C -0.135 4.135 12 C -0.144 4.144 13 C -0.045 4.045 14 N -0.221 5.221 15 C 0.019 3.981 16 C -0.143 4.143 17 C -0.129 4.129 18 C 0.068 3.932 19 F -0.115 7.115 20 C -0.128 4.128 21 C 0.007 3.993 22 C -0.074 4.074 23 N -0.112 5.112 24 N -0.075 5.075 25 N -0.056 5.056 26 H 0.349 0.651 27 N -0.148 5.148 28 C -0.031 4.031 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.051 0.949 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.353 -18.401 3.107 18.960 hybrid contribution 0.853 0.795 0.113 1.172 sum 4.207 -17.606 3.220 18.386 Atomic orbital electron populations 1.70085 1.07198 1.26915 1.51285 1.25683 0.95536 1.02145 0.94960 0.85687 0.78711 0.79770 0.78248 1.19934 1.21273 1.19416 1.21505 0.92922 0.92123 1.50592 0.93004 1.18501 0.92971 0.90779 0.93700 0.98579 1.21396 0.98647 0.95648 0.97814 1.21526 0.97579 0.94694 1.00598 1.21977 0.95783 0.98683 0.88032 1.59391 1.27377 1.00045 1.35301 1.19072 0.92946 0.92423 0.93647 1.21692 0.94276 0.98065 1.00279 1.21394 1.00899 0.93868 0.96778 1.17405 0.90742 0.87957 0.97101 1.91513 1.69878 1.55786 1.94357 1.21033 0.93583 0.97491 1.00717 1.17026 0.92411 0.96777 0.93137 1.23525 0.97868 0.93009 0.92954 1.76645 1.02061 1.18381 1.14136 1.79062 1.21303 1.08009 0.99131 1.47783 1.15687 1.20844 1.21312 0.65101 1.74790 1.04818 1.23726 1.11447 1.21975 0.94983 0.87596 0.98502 0.93250 0.93628 0.94885 0.93562 0.91076 0.90671 0.93769 0.83439 0.81468 0.82507 0.94925 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.27 11.75 21.45 0.25 -54.02 16 2 C 0.02 0.88 5.33 84.65 0.45 1.33 16 3 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -29.62 8.50 25.60 0.22 -29.40 16 8 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 9 C 0.06 3.04 2.17 -11.49 -0.02 3.01 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.10 -4.57 5.08 30.67 0.16 -4.42 16 12 C -0.11 -4.09 6.09 30.65 0.19 -3.91 16 13 C 0.08 2.67 5.17 86.33 0.45 3.12 16 14 N -0.50 -17.97 2.83 -694.61 -1.97 -19.94 16 15 C 0.12 3.47 4.68 38.43 0.18 3.65 16 16 C -0.12 -2.93 8.69 22.37 0.19 -2.73 16 17 C -0.11 -2.11 10.01 22.33 0.22 -1.89 16 18 C 0.09 1.83 7.29 22.35 0.16 1.99 16 19 F -0.14 -2.82 17.26 44.97 0.78 -2.04 16 20 C -0.11 -2.45 9.67 22.51 0.22 -2.23 16 21 C 0.01 0.31 5.89 -19.93 -0.12 0.19 16 22 C 0.21 6.45 7.89 137.34 1.08 7.53 16 23 N -0.24 -8.79 10.95 -52.22 -0.57 -9.36 16 24 N -0.08 -2.48 13.47 37.02 0.50 -1.99 16 25 N -0.21 -4.52 7.90 37.02 0.29 -4.23 16 26 H 0.49 5.27 8.96 -347.53 -3.12 2.15 16 27 N -0.29 -7.50 12.10 -52.17 -0.63 -8.13 16 28 C 0.10 4.00 4.34 86.33 0.37 4.37 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.04 2.47 6.58 -2.39 -0.02 2.45 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 35 H 0.04 1.31 7.54 -2.38 -0.02 1.30 16 36 H 0.15 3.26 7.12 -2.91 -0.02 3.24 16 37 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.16 3.12 7.89 -2.91 -0.02 3.09 16 39 H 0.03 1.29 7.34 -2.38 -0.02 1.27 16 40 H 0.04 1.89 8.11 -2.39 -0.02 1.87 16 Total: -1.00 -68.92 336.23 2.40 -66.51 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -2.02 Total: 6.41 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 3.75 Total: -19.39 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.13 Total: -97.66 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.92 2.40 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.513 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds