Wall clock time and date at job start Tue Mar 31 2020 11:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00036 * 2 1 4 4 H 1.48502 * 109.47374 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47426 * 300.00168 * 3 2 1 6 6 H 1.48501 * 109.46888 * 60.00602 * 3 2 1 7 7 C 1.37880 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00335 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47012 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46910 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99463 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00615 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99565 * 179.97438 * 12 11 10 15 15 N 1.46504 * 109.47204 * 179.97438 * 14 12 11 16 16 C 1.38913 * 120.00046 * 179.97438 * 15 14 12 17 17 C 1.39241 * 119.57903 * 0.02562 * 16 15 14 18 18 C 1.38068 * 119.21497 * 179.97438 * 17 16 15 19 19 C 1.39936 * 118.40718 * 359.97438 * 18 17 16 20 20 C 1.48428 * 120.45408 * 180.02562 * 19 18 17 21 21 N 1.34061 * 126.67106 * 359.67076 * 20 19 18 22 22 N 1.28988 * 107.26474 * 179.83522 * 21 20 19 23 23 N 1.28734 * 108.94711 * 0.42940 * 22 21 20 24 24 H 0.97003 * 125.33469 * 179.70772 * 23 22 21 25 25 N 1.28870 * 109.32111 * 359.72427 * 23 22 21 26 26 C 1.39125 * 119.09958 * 359.97438 * 19 18 17 27 27 N 1.31823 * 120.69000 * 0.02562 * 26 19 18 28 28 H 0.96995 * 119.99840 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46914 * 60.00456 * 9 7 2 30 30 H 1.08997 * 109.47177 * 300.00153 * 9 7 2 31 31 H 1.09004 * 109.47144 * 60.00309 * 10 9 7 32 32 H 1.08997 * 109.47040 * 299.99949 * 10 9 7 33 33 H 0.96993 * 119.99688 * 0.02562 * 11 10 9 34 34 H 1.09004 * 109.46914 * 60.00128 * 14 12 11 35 35 H 1.09003 * 109.47460 * 300.00173 * 14 12 11 36 36 H 0.96997 * 119.99920 * 0.02562 * 15 14 12 37 37 H 1.08000 * 120.38850 * 0.02562 * 17 16 15 38 38 H 1.08003 * 120.79316 * 179.97438 * 18 17 16 39 39 H 1.08003 * 119.65851 * 179.71993 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9309 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.3995 -6.0980 0.0006 14 6 1.4332 -7.4031 -0.0008 15 7 2.3852 -8.5167 -0.0009 16 6 1.9222 -9.8263 -0.0004 17 6 0.5514 -10.0707 -0.0004 18 6 0.0994 -11.3753 -0.0005 19 6 1.0446 -12.4073 -0.0011 20 6 0.6091 -13.8262 -0.0018 21 7 -0.6537 -14.2762 0.0043 22 7 -0.6010 -15.5650 -0.0024 23 7 0.6327 -15.9328 -0.0032 24 1 0.9442 -16.8514 -0.0037 25 7 1.3888 -14.8892 -0.0029 26 6 2.3980 -12.0852 -0.0022 27 7 2.7901 -10.8266 -0.0021 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.8720 -3.6044 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0019 34 1 0.8069 -7.4610 -0.8910 35 1 0.8062 -7.4607 0.8890 36 1 3.3389 -8.3394 -0.0006 37 1 -0.1500 -9.2494 -0.0011 38 1 -0.9582 -11.5941 0.0000 39 1 3.1352 -12.8745 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:44 Heat of formation + Delta-G solvation = 94.922530 kcal Electronic energy + Delta-G solvation = -23767.231036 eV Core-core repulsion = 19939.639530 eV Total energy + Delta-G solvation = -3827.591506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.36995 -41.38367 -40.64060 -37.10945 -36.44042 -35.32421 -34.83887 -34.47879 -33.17897 -31.94097 -30.82309 -28.48718 -26.49028 -25.83484 -24.87335 -24.25292 -22.99821 -22.55037 -21.53347 -20.15894 -19.24877 -18.49370 -18.06251 -17.96919 -17.37106 -17.19720 -16.93145 -16.64810 -16.41224 -15.70651 -15.37314 -15.26490 -14.97781 -14.89970 -14.30541 -14.17632 -14.00214 -13.85983 -13.45728 -13.20400 -13.15534 -12.94876 -12.52449 -12.48905 -12.24663 -12.21242 -12.10094 -11.68317 -11.44356 -10.97100 -10.92527 -10.74247 -10.59811 -10.52251 -10.05298 -8.70581 -8.23498 -6.33093 -0.22214 0.23978 0.36895 1.39161 1.41314 1.43233 1.50128 1.54757 1.55204 1.74838 2.37082 2.51005 2.77855 2.92228 3.11883 3.22754 3.62057 3.68904 3.95516 4.02832 4.28691 4.32003 4.35992 4.36061 4.50150 4.52409 4.55317 4.81310 4.88049 5.04692 5.19368 5.26493 5.43187 5.50034 5.61229 5.68005 5.80119 5.87375 6.17681 6.42540 6.57639 6.80554 7.09647 7.19839 7.20073 7.36351 8.88183 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.050608 B = 0.001622 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.139732 B =17257.972305 C =17785.360929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.021 3.979 10 C 0.140 3.860 11 N -0.709 5.709 12 C 0.501 3.499 13 O -0.586 6.586 14 C 0.113 3.887 15 N -0.712 5.712 16 C 0.411 3.589 17 C -0.236 4.236 18 C 0.013 3.987 19 C -0.149 4.149 20 C 0.229 3.771 21 N -0.296 5.296 22 N -0.059 5.059 23 N -0.202 5.202 24 H 0.493 0.507 25 N -0.304 5.304 26 C 0.195 3.805 27 N -0.569 5.569 28 H 0.265 0.735 29 H 0.012 0.988 30 H 0.012 0.988 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.417 0.583 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.408 0.592 37 H 0.169 0.831 38 H 0.161 0.839 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -31.080 -0.008 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.017 4.017 10 C 0.017 3.983 11 N -0.360 5.360 12 C 0.288 3.712 13 O -0.467 6.467 14 C -0.014 4.014 15 N -0.344 5.344 16 C 0.175 3.825 17 C -0.261 4.261 18 C -0.014 4.014 19 C -0.158 4.158 20 C -0.051 4.051 21 N -0.169 5.169 22 N -0.054 5.054 23 N -0.053 5.053 24 H 0.352 0.648 25 N -0.156 5.156 26 C 0.033 3.967 27 N -0.286 5.286 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.246 0.754 37 H 0.187 0.813 38 H 0.179 0.821 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.591 -31.049 -0.006 31.089 hybrid contribution 0.092 0.736 0.000 0.742 sum -1.499 -30.313 -0.006 30.350 Atomic orbital electron populations 1.70044 1.07395 1.27875 1.51072 1.25809 0.95762 1.02899 0.94511 0.85451 0.78984 0.79094 0.77841 1.19118 1.20326 1.20319 1.21508 0.93558 0.92085 1.51376 0.92482 1.19158 0.94274 0.91565 0.96695 1.21231 0.95048 0.82151 0.99906 1.45991 1.11451 1.05211 1.73331 1.21048 0.87956 0.86591 0.75589 1.90691 1.16000 1.87945 1.52077 1.21333 0.91440 0.81482 1.07157 1.44362 1.10240 1.01062 1.78753 1.18665 0.89862 0.85124 0.88881 1.21631 0.93836 0.98811 1.11810 1.21529 1.00695 0.90422 0.88746 1.17984 0.95049 0.86518 1.16262 1.23489 0.85921 0.94641 1.01030 1.76054 1.20866 1.00535 1.19447 1.78842 1.04079 1.07350 1.15116 1.47760 1.01830 1.11545 1.44176 0.64789 1.74896 1.23756 0.94034 1.22934 1.22631 0.93387 0.91907 0.88776 1.67205 1.38851 1.00030 1.22560 0.92577 0.96939 0.96951 0.93502 0.93511 0.74643 0.85300 0.85290 0.75409 0.81329 0.82146 0.80892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.61 13.29 21.45 0.28 -52.32 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.55 -29.57 9.11 25.60 0.23 -29.33 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.02 0.97 5.09 29.85 0.15 1.13 16 10 C 0.14 5.56 5.61 86.38 0.48 6.04 16 11 N -0.71 -20.58 5.56 -463.04 -2.57 -23.16 16 12 C 0.50 13.80 7.90 87.66 0.69 14.49 16 13 O -0.59 -21.56 15.67 -3.03 -0.05 -21.60 16 14 C 0.11 1.89 5.36 85.63 0.46 2.35 16 15 N -0.71 -15.17 5.70 -348.74 -1.99 -17.15 16 16 C 0.41 8.40 7.64 133.11 1.02 9.42 16 17 C -0.24 -3.52 9.31 22.47 0.21 -3.31 16 18 C 0.01 0.20 9.82 22.64 0.22 0.42 16 19 C -0.15 -2.63 5.89 -19.94 -0.12 -2.75 16 20 C 0.23 4.09 7.95 137.36 1.09 5.19 16 21 N -0.30 -5.63 12.30 -52.19 -0.64 -6.27 16 22 N -0.06 -0.90 13.47 37.02 0.50 -0.40 16 23 N -0.20 -1.94 7.90 37.02 0.29 -1.65 16 24 H 0.49 -0.18 8.96 -347.53 -3.12 -3.30 16 25 N -0.30 -4.44 12.10 -52.14 -0.63 -5.07 16 26 C 0.19 3.67 10.86 84.91 0.92 4.59 16 27 N -0.57 -12.94 10.38 -192.45 -2.00 -14.94 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.42 9.50 8.47 -92.71 -0.79 8.71 16 34 H 0.13 1.42 7.92 -2.39 -0.02 1.40 16 35 H 0.13 1.42 7.92 -2.39 -0.02 1.40 16 36 H 0.41 10.65 7.56 -92.71 -0.70 9.94 16 37 H 0.17 1.48 6.68 -2.91 -0.02 1.46 16 38 H 0.16 1.90 7.96 -2.91 -0.02 1.88 16 39 H 0.17 2.68 7.88 -2.91 -0.02 2.66 16 Total: -1.00 -74.06 349.20 -2.40 -76.46 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -3.45 Total: 12.16 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.83 Total: 9.19 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -6.75 Total: -120.96 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.06 -2.40 -76.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.381 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds