Wall clock time and date at job start Tue Mar 31 2020 11:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00149 * 2 1 4 4 H 1.48497 * 109.46910 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46899 * 299.99722 * 3 2 1 6 6 H 1.48502 * 109.47131 * 59.99761 * 3 2 1 7 7 C 1.37876 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47338 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.34768 * 119.99719 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00543 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99867 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00131 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47026 * 179.97438 * 15 14 12 17 17 C 1.38312 * 119.49163 * 95.00029 * 16 15 14 18 18 C 1.38425 * 119.28044 * 180.02562 * 17 16 15 19 19 C 1.39723 * 118.31485 * 0.02562 * 18 17 16 20 20 C 1.48468 * 120.53122 * 180.02562 * 19 18 17 21 21 N 1.34043 * 126.67551 * 359.66706 * 20 19 18 22 22 N 1.28988 * 107.27014 * 179.83514 * 21 20 19 23 23 N 1.28733 * 108.93871 * 0.42947 * 22 21 20 24 24 H 0.97002 * 125.33550 * 179.70042 * 23 22 21 25 25 N 1.28871 * 109.31896 * 359.72419 * 23 22 21 26 26 C 1.39265 * 118.93635 * 359.97438 * 19 18 17 27 27 N 1.31747 * 120.60381 * 0.02562 * 26 19 18 28 28 H 0.97000 * 119.99562 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46910 * 60.00450 * 9 7 2 30 30 H 1.08998 * 109.47221 * 300.00402 * 9 7 2 31 31 H 1.08995 * 109.47089 * 60.00331 * 10 9 7 32 32 H 1.08998 * 109.47209 * 300.00307 * 10 9 7 33 33 H 0.96993 * 119.99758 * 359.97438 * 11 10 9 34 34 H 0.96999 * 119.99961 * 359.97438 * 14 12 11 35 35 H 1.08999 * 109.46682 * 59.99878 * 15 14 12 36 36 H 1.08997 * 109.46952 * 299.99687 * 15 14 12 37 37 H 1.07998 * 120.35951 * 0.04301 * 17 16 15 38 38 H 1.08001 * 120.84073 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.69585 * 179.72340 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 2.1865 -6.0979 0.0047 13 8 3.4024 -6.0980 0.0051 14 7 1.5126 -7.2652 0.0057 15 6 2.2451 -8.5340 0.0067 16 6 1.2658 -9.6793 0.0084 17 6 0.9026 -10.2663 -1.1902 18 6 0.0023 -11.3178 -1.1837 19 6 -0.5074 -11.7462 0.0447 20 6 -1.4755 -12.8700 0.1090 21 7 -1.9605 -13.5691 -0.9268 22 7 -2.7659 -14.4551 -0.4472 23 7 -2.8088 -14.3312 0.8335 24 1 -3.3440 -14.8753 1.4322 25 7 -2.0296 -13.3706 1.1952 26 6 -0.0919 -11.1030 1.2079 27 7 0.7676 -10.1059 1.1526 28 1 -0.4849 0.8401 -0.0004 29 1 0.6241 -2.5575 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8718 -3.6036 0.8927 32 1 2.8719 -3.6051 -0.8872 33 1 0.5427 -4.9308 0.0033 34 1 0.5427 -7.2652 0.0058 35 1 2.8718 -8.5909 0.8967 36 1 2.8717 -8.5924 -0.8832 37 1 1.3171 -9.9084 -2.1210 38 1 -0.2992 -11.7943 -2.1048 39 1 -0.4814 -11.4212 2.1636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:43 Heat of formation + Delta-G solvation = 123.833432 kcal Electronic energy + Delta-G solvation = -23873.861828 eV Core-core repulsion = 20047.523992 eV Total energy + Delta-G solvation = -3826.337835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.99212 -40.81618 -39.43157 -35.69816 -34.94648 -34.57473 -33.98692 -32.83203 -32.76586 -31.46720 -29.51801 -27.22541 -25.50272 -24.74436 -24.08976 -23.41434 -22.07162 -21.02991 -20.54743 -19.77175 -18.29663 -17.67533 -17.26075 -16.95592 -16.43371 -16.23635 -15.60166 -15.22191 -14.62471 -14.52459 -14.41814 -14.20530 -13.84046 -13.57771 -13.47986 -13.31561 -12.85576 -12.49372 -12.31498 -12.24114 -11.97613 -11.70433 -11.66477 -11.15110 -11.02661 -10.59319 -10.29875 -10.26254 -10.02130 -9.95263 -9.56738 -9.33722 -9.19774 -9.04414 -8.46619 -8.22470 -6.06938 -4.09297 -0.01821 0.62419 0.76935 1.70269 1.75551 2.95034 3.06699 3.30534 3.38009 3.42851 3.47348 3.59114 3.60665 3.81819 4.23399 4.35510 4.42352 4.62897 4.63405 4.73445 4.85094 5.00713 5.23573 5.30367 5.32279 5.54842 5.60790 5.71520 5.83145 6.07647 6.32000 6.43407 6.52274 6.81038 7.02531 7.22761 7.44902 7.59735 7.59851 7.66494 7.92643 8.28339 8.44311 8.95336 9.01151 9.55434 11.04787 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.001755 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.248861 B =15950.301199 C =16496.411195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.702 3.298 13 O -0.597 6.597 14 N -0.747 5.747 15 C 0.190 3.810 16 C 0.131 3.869 17 C -0.152 4.152 18 C -0.032 4.032 19 C -0.070 4.070 20 C 0.222 3.778 21 N -0.266 5.266 22 N -0.046 5.046 23 N -0.224 5.224 24 H 0.477 0.523 25 N -0.289 5.289 26 C 0.145 3.855 27 N -0.464 5.464 28 H 0.261 0.739 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.393 0.607 34 H 0.395 0.605 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 -31.283 0.333 31.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.401 3.599 13 O -0.475 6.475 14 N -0.405 5.405 15 C 0.065 3.935 16 C -0.007 4.007 17 C -0.172 4.172 18 C -0.060 4.060 19 C -0.076 4.076 20 C -0.058 4.058 21 N -0.139 5.139 22 N -0.041 5.041 23 N -0.071 5.071 24 H 0.332 0.668 25 N -0.140 5.140 26 C -0.016 4.016 27 N -0.172 5.172 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.226 0.774 34 H 0.228 0.772 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.690 -31.187 0.847 31.713 hybrid contribution -1.066 0.347 -0.159 1.133 sum -6.756 -30.839 0.688 31.578 Atomic orbital electron populations 1.69968 1.06092 1.26709 1.50603 1.25001 0.94891 0.99417 0.95053 0.86456 0.80202 0.83342 0.77563 1.19546 1.20979 1.20981 1.21100 0.93330 0.90342 1.51034 0.92126 1.19339 0.94294 0.91114 0.97837 1.21601 0.95623 0.80316 1.00713 1.45521 1.09890 1.05252 1.78406 1.15980 0.85565 0.80312 0.78006 1.90898 1.11670 1.86568 1.58394 1.44972 1.09457 1.04014 1.82046 1.19902 0.91146 0.78347 1.04093 1.21539 0.94914 0.95694 0.88534 1.22061 0.98519 0.96733 0.99897 1.21667 0.92791 0.93993 0.97518 1.18305 0.98156 0.95000 0.96115 1.23435 0.99253 0.98547 0.84592 1.76100 1.08204 1.03857 1.25779 1.78950 1.14860 1.17263 0.93005 1.47755 1.29816 1.22744 1.06739 0.66784 1.74934 1.08465 1.04085 1.26563 1.22921 0.91360 0.89755 0.97568 1.67671 1.08933 1.11742 1.28873 0.92948 0.95948 0.95949 0.92712 0.92715 0.77360 0.77154 0.89583 0.89661 0.83257 0.83176 0.81540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 11 N -0.74 -13.08 5.56 -65.23 -0.36 -13.44 16 12 C 0.70 12.18 8.57 -86.92 -0.74 11.43 16 13 O -0.60 -12.67 16.34 5.29 0.09 -12.58 16 14 N -0.75 -9.45 5.55 -66.42 -0.37 -9.82 16 15 C 0.19 2.07 5.97 -5.19 -0.03 2.04 16 16 C 0.13 1.21 6.15 -82.54 -0.51 0.70 16 17 C -0.15 -1.09 9.70 -39.49 -0.38 -1.47 16 18 C -0.03 -0.22 9.84 -38.96 -0.38 -0.61 16 19 C -0.07 -0.56 5.89 -104.74 -0.62 -1.18 16 20 C 0.22 1.84 7.95 -156.31 -1.24 0.59 16 21 N -0.27 -2.38 12.31 32.16 0.40 -1.98 16 22 N -0.05 -0.33 13.47 60.35 0.81 0.48 16 23 N -0.22 -1.03 7.90 60.35 0.48 -0.55 16 24 H 0.48 -0.09 8.96 -340.37 -3.05 -3.14 16 25 N -0.29 -1.99 12.11 32.17 0.39 -1.60 16 26 C 0.14 1.21 10.87 -17.21 -0.19 1.03 16 27 N -0.46 -4.66 10.26 -9.21 -0.09 -4.76 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.39 6.03 8.49 -40.82 -0.35 5.68 16 34 H 0.40 4.19 8.48 -40.82 -0.35 3.84 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 0.86 8.04 -51.93 -0.42 0.45 16 37 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.15 0.85 7.97 -52.49 -0.42 0.43 16 39 H 0.17 1.15 7.90 -52.49 -0.41 0.73 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -35.75 352.50 -9.38 -45.13 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.07 Total: 0.41 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -4.67 Total: 2.44 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 1.99 Total: -57.16 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.75 -9.38 -45.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.962 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds