Wall clock time and date at job start Tue Mar 31 2020 11:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00149 * 2 1 4 4 H 1.48497 * 109.46910 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46899 * 299.99722 * 3 2 1 6 6 H 1.48502 * 109.47131 * 59.99761 * 3 2 1 7 7 C 1.37876 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00067 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47338 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.34768 * 119.99719 * 180.02562 * 11 10 9 13 13 O 1.21586 * 120.00543 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99867 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00131 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47026 * 179.97438 * 15 14 12 17 17 C 1.38312 * 119.49163 * 95.00029 * 16 15 14 18 18 C 1.38425 * 119.28044 * 180.02562 * 17 16 15 19 19 C 1.39723 * 118.31485 * 0.02562 * 18 17 16 20 20 C 1.48468 * 120.53122 * 180.02562 * 19 18 17 21 21 N 1.34043 * 126.67551 * 359.66706 * 20 19 18 22 22 N 1.28988 * 107.27014 * 179.83514 * 21 20 19 23 23 N 1.28733 * 108.93871 * 0.42947 * 22 21 20 24 24 H 0.97002 * 125.33550 * 179.70042 * 23 22 21 25 25 N 1.28871 * 109.31896 * 359.72419 * 23 22 21 26 26 C 1.39265 * 118.93635 * 359.97438 * 19 18 17 27 27 N 1.31747 * 120.60381 * 0.02562 * 26 19 18 28 28 H 0.97000 * 119.99562 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46910 * 60.00450 * 9 7 2 30 30 H 1.08998 * 109.47221 * 300.00402 * 9 7 2 31 31 H 1.08995 * 109.47089 * 60.00331 * 10 9 7 32 32 H 1.08998 * 109.47209 * 300.00307 * 10 9 7 33 33 H 0.96993 * 119.99758 * 359.97438 * 11 10 9 34 34 H 0.96999 * 119.99961 * 359.97438 * 14 12 11 35 35 H 1.08999 * 109.46682 * 59.99878 * 15 14 12 36 36 H 1.08997 * 109.46952 * 299.99687 * 15 14 12 37 37 H 1.07998 * 120.35951 * 0.04301 * 17 16 15 38 38 H 1.08001 * 120.84073 * 179.97438 * 18 17 16 39 39 H 1.07997 * 119.69585 * 179.72340 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 2.1865 -6.0979 0.0047 13 8 3.4024 -6.0980 0.0051 14 7 1.5126 -7.2652 0.0057 15 6 2.2451 -8.5340 0.0067 16 6 1.2658 -9.6793 0.0084 17 6 0.9026 -10.2663 -1.1902 18 6 0.0023 -11.3178 -1.1837 19 6 -0.5074 -11.7462 0.0447 20 6 -1.4755 -12.8700 0.1090 21 7 -1.9605 -13.5691 -0.9268 22 7 -2.7659 -14.4551 -0.4472 23 7 -2.8088 -14.3312 0.8335 24 1 -3.3440 -14.8753 1.4322 25 7 -2.0296 -13.3706 1.1952 26 6 -0.0919 -11.1030 1.2079 27 7 0.7676 -10.1059 1.1526 28 1 -0.4849 0.8401 -0.0004 29 1 0.6241 -2.5575 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8718 -3.6036 0.8927 32 1 2.8719 -3.6051 -0.8872 33 1 0.5427 -4.9308 0.0033 34 1 0.5427 -7.2652 0.0058 35 1 2.8718 -8.5909 0.8967 36 1 2.8717 -8.5924 -0.8832 37 1 1.3171 -9.9084 -2.1210 38 1 -0.2992 -11.7943 -2.1048 39 1 -0.4814 -11.4212 2.1636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:42 Heat of formation + Delta-G solvation = 95.680289 kcal Electronic energy + Delta-G solvation = -23875.082639 eV Core-core repulsion = 20047.523992 eV Total energy + Delta-G solvation = -3827.558647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.52468 -41.53677 -40.75703 -36.87118 -36.16319 -35.44639 -34.83894 -34.67566 -33.38858 -32.38599 -31.20254 -28.21827 -26.47146 -26.05016 -24.88104 -24.07211 -22.98259 -22.61521 -21.95769 -20.26974 -19.60965 -18.40614 -18.20186 -17.94019 -17.65404 -17.32232 -16.64503 -16.53560 -16.42627 -15.54296 -15.30276 -15.17100 -15.04502 -14.80815 -14.52499 -14.24387 -14.09095 -13.67575 -13.40009 -13.17441 -12.98977 -12.91956 -12.53514 -12.48556 -12.28495 -12.23214 -12.20637 -11.65479 -11.47891 -11.21167 -10.84850 -10.63846 -10.58722 -10.33576 -9.96732 -9.70393 -8.21749 -6.31631 -0.63431 0.09057 0.18813 1.12092 1.36657 1.43149 1.44129 1.57376 1.82484 2.19960 2.43347 2.51076 2.72091 3.01693 3.12527 3.13286 3.46664 3.59830 3.79379 4.02765 4.07371 4.23539 4.41838 4.50778 4.54563 4.58011 4.70910 4.73031 4.91280 4.99289 5.07574 5.34384 5.41604 5.48587 5.55187 5.56476 5.63249 5.81815 6.03352 6.20161 6.80557 6.82103 7.05218 7.12402 7.37693 7.61245 8.90382 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.001755 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.248861 B =15950.301199 C =16496.411195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.161 3.839 11 N -0.733 5.733 12 C 0.702 3.298 13 O -0.636 6.636 14 N -0.727 5.727 15 C 0.191 3.809 16 C 0.121 3.879 17 C -0.140 4.140 18 C -0.029 4.029 19 C -0.069 4.069 20 C 0.211 3.789 21 N -0.288 5.288 22 N -0.054 5.054 23 N -0.198 5.198 24 H 0.496 0.504 25 N -0.290 5.290 26 C 0.140 3.860 27 N -0.488 5.488 28 H 0.265 0.735 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.406 0.594 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 -32.206 -0.004 32.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.036 3.964 11 N -0.388 5.388 12 C 0.402 3.598 13 O -0.518 6.518 14 N -0.384 5.384 15 C 0.067 3.933 16 C -0.017 4.017 17 C -0.160 4.160 18 C -0.057 4.057 19 C -0.074 4.074 20 C -0.070 4.070 21 N -0.160 5.160 22 N -0.049 5.049 23 N -0.049 5.049 24 H 0.355 0.645 25 N -0.143 5.143 26 C -0.021 4.021 27 N -0.196 5.196 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.241 0.759 34 H 0.243 0.757 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.189 0.811 38 H 0.183 0.817 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.121 -32.174 0.514 32.755 hybrid contribution -1.044 0.481 -0.006 1.150 sum -7.165 -31.693 0.508 32.497 Atomic orbital electron populations 1.70069 1.07539 1.27865 1.51227 1.25874 0.95796 1.03098 0.94492 0.85387 0.79023 0.78763 0.77814 1.18889 1.20246 1.20350 1.21511 0.93664 0.91881 1.51217 0.92190 1.19148 0.94300 0.91735 0.96367 1.21078 0.94568 0.80963 0.99749 1.45213 1.10389 1.04445 1.78745 1.16037 0.85061 0.81010 0.77669 1.90872 1.13506 1.87222 1.60156 1.44804 1.10085 1.03272 1.80260 1.19958 0.91525 0.77923 1.03895 1.21292 0.95422 0.95751 0.89240 1.22217 0.97782 0.96079 0.99903 1.21869 0.92285 0.93694 0.97824 1.18387 0.97897 0.94772 0.96369 1.23495 0.99737 0.98916 0.84804 1.76075 1.08964 1.04500 1.26454 1.78897 1.14934 1.17220 0.93873 1.47823 1.28752 1.21870 1.06440 0.64504 1.74908 1.08598 1.04417 1.26332 1.23032 0.91225 0.89543 0.98274 1.67589 1.09735 1.12670 1.29628 0.92611 0.97188 0.97410 0.93841 0.93521 0.75861 0.75668 0.91131 0.88584 0.81081 0.81655 0.80609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 2 C 0.01 0.33 5.46 84.65 0.46 0.80 16 3 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C 0.16 7.00 5.61 86.38 0.48 7.48 16 11 N -0.73 -25.83 5.56 -478.54 -2.66 -28.49 16 12 C 0.70 24.08 8.57 179.06 1.53 25.61 16 13 O -0.64 -27.02 16.34 -3.99 -0.07 -27.09 16 14 N -0.73 -17.68 5.55 -482.30 -2.68 -20.36 16 15 C 0.19 4.01 5.97 85.63 0.51 4.52 16 16 C 0.12 2.07 6.15 42.57 0.26 2.33 16 17 C -0.14 -1.71 9.70 22.33 0.22 -1.50 16 18 C -0.03 -0.35 9.84 22.67 0.22 -0.13 16 19 C -0.07 -1.00 5.89 -19.94 -0.12 -1.12 16 20 C 0.21 3.20 7.95 137.38 1.09 4.29 16 21 N -0.29 -4.75 12.31 -52.18 -0.64 -5.39 16 22 N -0.05 -0.72 13.47 37.02 0.50 -0.22 16 23 N -0.20 -1.48 7.90 37.02 0.29 -1.18 16 24 H 0.50 -1.15 8.96 -347.53 -3.12 -4.27 16 25 N -0.29 -3.55 12.11 -52.13 -0.63 -4.18 16 26 C 0.14 2.21 10.87 84.95 0.92 3.13 16 27 N -0.49 -9.40 10.26 -183.05 -1.88 -11.28 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.41 12.21 8.49 -92.71 -0.79 11.42 16 34 H 0.41 8.05 8.48 -92.71 -0.79 7.27 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 1.83 8.04 -2.39 -0.02 1.81 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.17 1.50 7.97 -2.91 -0.02 1.48 16 39 H 0.18 2.27 7.90 -2.91 -0.02 2.25 16 Total: -1.00 -76.17 352.50 -3.02 -79.19 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -3.55 Total: 11.01 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.98 Total: 16.40 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -7.41 Total: -125.32 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.07 Total: -27.09 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -76.17 -3.02 -79.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.874 kcal (2) G-P(sol) polarization free energy of solvation -76.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds